Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-300 |
| Cow position: | chr28:9851368-9851657 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 194, 39 |
| Conread position: | 1-347 |
| Cow position: | chr28:13725896-13726259 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 1-354 |
| Cow position: | chr28:2814764-2814406 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 73 |
| Conread position: | 1-354 |
| Cow position: | chr28:13693484-13693852 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 133 |
| Conread position: | 1-384 |
| Cow position: | chr28:25563810-25564216 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 1-386 |
| Cow position: | chr28:15677632-15678022 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 123, 33 |
| Conread position: | 3-326 |
| Cow position: | chr28:10642282-10641959 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 3-409 |
| Cow position: | chr28:20963793-20963369 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 4-307 |
| Cow position: | chr28:18462874-18462557 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 106, 23 |
| Conread position: | 4-321 |
| Cow position: | chr28:10682080-10681756 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 4-370 |
| Cow position: | chr28:16622754-16623102 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 107, 58 |
| Conread position: | 4-409 |
| Cow position: | chr28:3769921-3769511 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 4-424 |
| Cow position: | chr28:34199360-34198930 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 5-384 |
| Cow position: | chr28:21873511-21873893 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 5-421 |
| Cow position: | chr28:18934190-18934625 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 6-353 |
| Cow position: | chr28:31972007-31971650 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 37 |
| Conread position: | 7-345 |
| Cow position: | chr28:23621289-23621631 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 7-371 |
| Cow position: | chr28:5817588-5817963 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 147, 54 |
| Conread position: | 8-338 |
| Cow position: | chr28:16686775-16687113 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 8-412 |
| Cow position: | chr28:4275090-4274683 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 11-409 |
| Cow position: | chr28:14508621-14508209 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 12-342 |
| Cow position: | chr28:17153528-17153842 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 15-347 |
| Cow position: | chr28:13936165-13936494 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 108, 69 |
| Conread position: | 16-287 |
| Cow position: | chr28:15590739-15591007 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 26-386 |
| Cow position: | chr28:11501132-11500749 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 92, 58 |
| Conread position: | 31-398 |
| Cow position: | chr28:25826106-25825719 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 47-377 |
| Cow position: | chr28:12047119-12046786 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 52-398 |
| Cow position: | chr28:15082139-15081775 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 58-345 |
| Cow position: | chr28:4098637-4098924 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 84-352 |
| Cow position: | chr28:21570002-21570291 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 84-408 |
| Cow position: | chr28:5475219-5474874 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 289 |
| Conread position: | 104-424 |
| Cow position: | chr28:6643447-6643106 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 7, 132 |
| Conread position: | 144-424 |
| Cow position: | chr28:12998988-12999273 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 147-381 |
| Cow position: | chr28:5406457-5406681 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 147-386 |
| Cow position: | chr28:11007088-11007336 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 188-398 |
| Cow position: | chr28:9237254-9237460 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 188-409 |
| Cow position: | chr28:19253419-19253637 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 97, 29 |
| Conread position: | 188-424 |
| Cow position: | chr28:7540220-7539979 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 189-386 |
| Cow position: | chr28:33285173-33284974 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 189-409 |
| Cow position: | chr28:4763816-4764036 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 103, 34 |
| Conread position: | 189-424 |
| Cow position: | chr28:1202300-1202067 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 173, 17 |
| Conread position: | 189-424 |
| Cow position: | chr28:31166045-31165803 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 197-398 |
| Cow position: | chr28:1604771-1604962 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 222-422 |
| Cow position: | chr28:8335928-8336133 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 69, 173 |
| Conread position: | 230-411 |
| Cow position: | chr28:25340248-25340431 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 253-421 |
| Cow position: | chr28:3823138-3822970 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 114, 91 |
| Conread position: | 281-424 |
| Cow position: | chr28:22421956-22421813 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 110 |
Show alignments to all cow chromosomes.