Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-192 |
| Cow position: | chr29:3395838-3396029 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 131, 78 |
| Conread position: | 1-289 |
| Cow position: | chr29:12005036-12004736 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 1-358 |
| Cow position: | chr29:32644642-32645011 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 1-361 |
| Cow position: | chr29:17543178-17543543 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 1-381 |
| Cow position: | chr29:37961244-37960852 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 1-421 |
| Cow position: | chr29:18963468-18963899 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 68 |
| Conread position: | 2-240 |
| Cow position: | chr29:22957605-22957362 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 82 |
| Conread position: | 2-409 |
| Cow position: | chr29:7408160-7407752 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 82 |
| Conread position: | 3-191 |
| Cow position: | chr29:1612843-1612653 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 47 |
| Conread position: | 3-424 |
| Cow position: | chr29:13634570-13634128 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 4-270 |
| Cow position: | chr29:603577-603311 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 4-377 |
| Cow position: | chr29:24604417-24604017 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 5-411 |
| Cow position: | chr29:13127376-13126967 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 5-422 |
| Cow position: | chr29:4367453-4367894 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 37 |
| Conread position: | 5-424 |
| Cow position: | chr29:11071972-11071514 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 9-189 |
| Cow position: | chr29:42939617-42939437 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 9-379 |
| Cow position: | chr29:9938331-9937960 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 10-424 |
| Cow position: | chr29:29302917-29302490 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 56 |
| Conread position: | 11-386 |
| Cow position: | chr29:18694995-18695379 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 73 |
| Conread position: | 11-387 |
| Cow position: | chr29:32655686-32655305 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 11-421 |
| Cow position: | chr29:26129237-26129659 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 14-279 |
| Cow position: | chr29:35738529-35738256 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 15-370 |
| Cow position: | chr29:12451114-12451486 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 27 |
| Conread position: | 15-424 |
| Cow position: | chr29:26298724-26299137 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 102, 53 |
| Conread position: | 17-424 |
| Cow position: | chr29:2275089-2274672 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 19-379 |
| Cow position: | chr29:650020-650396 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 57 |
| Conread position: | 19-386 |
| Cow position: | chr29:13553878-13554266 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 65 |
| Conread position: | 19-386 |
| Cow position: | chr29:26317607-26317981 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 22-361 |
| Cow position: | chr29:11787541-11787898 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 25-424 |
| Cow position: | chr29:22895468-22895900 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 34-409 |
| Cow position: | chr29:39023577-39023185 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 36-398 |
| Cow position: | chr29:19508723-19509084 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 37-347 |
| Cow position: | chr29:17339535-17339216 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 62-363 |
| Cow position: | chr29:10187848-10188164 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 89-424 |
| Cow position: | chr29:7663451-7663100 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 97-404 |
| Cow position: | chr29:26985045-26985374 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 109-348 |
| Cow position: | chr29:27285628-27285861 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 148-424 |
| Cow position: | chr29:7054309-7054583 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 161-424 |
| Cow position: | chr29:942534-942793 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 164-424 |
| Cow position: | chr29:41083060-41083313 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 54 |
| Conread position: | 182-368 |
| Cow position: | chr29:19897534-19897719 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 188-390 |
| Cow position: | chr29:38759087-38758893 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 188-412 |
| Cow position: | chr29:21265693-21265914 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 188-419 |
| Cow position: | chr29:14758929-14758703 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 174, 35 |
| Conread position: | 189-340 |
| Cow position: | chr29:23233384-23233529 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 189-378 |
| Cow position: | chr29:4444648-4444839 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 189-381 |
| Cow position: | chr29:16055196-16055008 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 173, 31 |
| Conread position: | 189-409 |
| Cow position: | chr29:18540990-18541199 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 178, 48 |
| Conread position: | 189-422 |
| Cow position: | chr29:11005665-11005901 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 31 |
| Conread position: | 189-424 |
| Cow position: | chr29:21675328-21675563 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 190-397 |
| Cow position: | chr29:1340718-1340921 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 92, 6 |
| Conread position: | 190-421 |
| Cow position: | chr29:6772067-6772294 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 193-378 |
| Cow position: | chr29:4691455-4691267 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 193-424 |
| Cow position: | chr29:5976848-5976618 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 197-424 |
| Cow position: | chr29:29559780-29559549 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 201-398 |
| Cow position: | chr29:5616924-5616728 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 206-349 |
| Cow position: | chr29:34785261-34785122 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.