Cow genome map

Conread name: Pla1-C0001062_A21

Conread position: 1-236
Cow position: chr22:11641220-11641455 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 103, 113

Conread position: 1-292
Cow position: chr22:12430874-12430583 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 187
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-305
Cow position: chr22:12418749-12418445 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 189
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-313
Cow position: chr22:12385220-12384908 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 208
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 182, 191

Conread position: 1-313
Cow position: chr22:12399062-12398750 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 291, 285

Conread position: 1-316
Cow position: chr22:11701379-11701694 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 206
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 36, 26

Conread position: 1-317
Cow position: chr22:12458078-12457762 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 212
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 29

Conread position: 1-321
Cow position: chr22:12475607-12475287 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-321
Cow position: chr22:12499652-12499972 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-329
Cow position: chr22:12418833-12418505 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-331
Cow position: chr22:14430596-14430926 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 214
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 29

Conread position: 1-339
Cow position: chr22:12430958-12430620 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 202, 186

Conread position: 1-343
Cow position: chr22:11641052-11641394 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 281

Conread position: 1-343
Cow position: chr22:46654123-46654465 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 209
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 125

Conread position: 1-348
Cow position: chr22:11666557-11666905 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 238
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 32, 24

Conread position: 1-349
Cow position: chr22:11640800-11641148 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-349
Cow position: chr22:11640968-11641316 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-349
Cow position: chr22:12431882-12431533 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 0

Conread position: 1-349
Cow position: chr22:12476027-12475679 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-349
Cow position: chr22:14430092-14430440 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 220
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 122, 100

Conread position: 1-349
Cow position: chr22:46654375-46654723 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 41

Conread position: 1-350
Cow position: chr22:12432302-12431953 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 234
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 256, 262

Conread position: 1-351
Cow position: chr22:12499568-12499918 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 262

Conread position: 1-351
Cow position: chr22:46654039-46654389 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 213, 209

Conread position: 1-352
Cow position: chr22:14429840-14430191 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 122, 111

Conread position: 1-352
Cow position: chr22:14468085-14468436 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 222
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 197, 183

Conread position: 1-355
Cow position: chr22:12476363-12476009 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-361
Cow position: chr22:46654459-46654819 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 233
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 33, 26

Conread position: 1-388
Cow position: chr22:12385388-12385001 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 357

Conread position: 1-388
Cow position: chr22:12431378-12430991 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 352

Conread position: 1-388
Cow position: chr22:46654291-46654678 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 129, 125

Conread position: 1-389
Cow position: chr22:12458414-12458026 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-391
Cow position: chr22:12458246-12457856 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 59

Conread position: 1-393
Cow position: chr22:12431042-12430650 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 105

Conread position: 1-393
Cow position: chr22:12432218-12431826 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 255
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 23

Conread position: 1-394
Cow position: chr22:11666473-11666866 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 258
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 99, 112

Conread position: 1-394
Cow position: chr22:11701211-11701604 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 261
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 118, 110

Conread position: 1-394
Cow position: chr22:12385304-12384911 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 219

Conread position: 1-394
Cow position: chr22:12385474-12385079 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 0

Conread position: 1-394
Cow position: chr22:12399230-12398837 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 358

Conread position: 1-394
Cow position: chr22:12399314-12398921 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 198

Conread position: 1-394
Cow position: chr22:12399398-12399005 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 25

Conread position: 1-394
Cow position: chr22:12399566-12399173 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 101

Conread position: 1-394
Cow position: chr22:12399650-12399257 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 193

Conread position: 1-394
Cow position: chr22:12399734-12399341 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 361

Conread position: 1-394
Cow position: chr22:12399896-12399509 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 56

Conread position: 1-394
Cow position: chr22:12431126-12430733 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 189

Conread position: 1-394
Cow position: chr22:12431294-12430901 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 359

Conread position: 1-394
Cow position: chr22:12458330-12457937 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 269

Conread position: 1-394
Cow position: chr22:12458498-12458105 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 271

Conread position: 1-394
Cow position: chr22:12475691-12475298 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 198

Conread position: 1-394
Cow position: chr22:12475775-12475382 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr22:12475943-12475550 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr22:12476111-12475718 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 196

Conread position: 1-394
Cow position: chr22:12499316-12499709 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr22:12499484-12499877 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr22:14430428-14430821 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 247
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 20

Conread position: 1-394
Cow position: chr22:46654207-46654600 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 243
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 41

Conread position: 1-395
Cow position: chr22:12458582-12458188 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr22:11640884-11641279 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr22:11701127-11701522 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 256
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 99, 104

Conread position: 1-396
Cow position: chr22:12399818-12399423 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr22:12418917-12418522 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 198

Conread position: 1-396
Cow position: chr22:12419270-12418858 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 246
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 241, 0

Conread position: 1-396
Cow position: chr22:12431546-12431151 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 259
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 267, 259

Conread position: 1-396
Cow position: chr22:12431714-12431319 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 273

Conread position: 1-396
Cow position: chr22:12475859-12475464 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr22:12476279-12475884 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 296

Conread position: 1-396
Cow position: chr22:12499400-12499795 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-265
Cow position: chr22:12544524-12544787 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 169
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 64, 54

Conread position: 2-394
Cow position: chr22:14429508-14429897 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 246
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 185, 121

Conread position: 2-394
Cow position: chr22:46653956-46654348 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 231
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 339, 364

Conread position: 3-394
Cow position: chr22:12499150-12499541 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 190

Conread position: 4-395
Cow position: chr22:12499066-12499458 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 4-396
Cow position: chr22:12476193-12475800 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 11-394
Cow position: chr22:12499242-12499625 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 252

Conread position: 15-352
Cow position: chr22:12385712-12385372 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 224
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 31

Conread position: 17-332
Cow position: chr22:12419338-12419023 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 179
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 23-350
Cow position: chr22:12432448-12432121 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 273

Conread position: 23-394
Cow position: chr22:12399460-12399089 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-394
Cow position: chr22:12544882-12545252 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 228
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 178, 172

Conread position: 24-396
Cow position: chr22:11640655-11641027 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 32

Conread position: 29-388
Cow position: chr22:12431602-12431243 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 224
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 29-396
Cow position: chr22:12431182-12430815 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-352
Cow position: chr22:12431769-12431447 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 172, 164

Conread position: 31-390
Cow position: chr22:12458132-12457773 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 70

Conread position: 36-320
Cow position: chr22:11666676-11666960 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 191
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 88, 77

Conread position: 37-396
Cow position: chr22:12476411-12476052 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 262

Conread position: 37-396
Cow position: chr22:12498848-12499207 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 316

Conread position: 39-394
Cow position: chr22:12431424-12431069 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 54-349
Cow position: chr22:14429641-14429936 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 60-394
Cow position: chr22:12399922-12399593 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 16, 83

Conread position: 68-396
Cow position: chr22:12419018-12418690 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-343
Cow position: chr22:11666461-11666731 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 110, 116

Conread position: 73-349
Cow position: chr22:11701115-11701391 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 116

Conread position: 98-396
Cow position: chr22:12385713-12385415 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 38

Conread position: 116-349
Cow position: chr22:12419323-12419090 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 122-349
Cow position: chr22:14467954-14468181 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 149
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 155, 139

Conread position: 124-396
Cow position: chr22:12458627-12458355 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 205-394
Cow position: chr22:12458630-12458441 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.