Cow genome map
| Conread name: | Pla1-C0001062_A21 |
| Conread position: | 1-220 |
| Cow position: | chr23:25698294-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr23:24521952-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 181, 224 |
| Conread position: | 1-271 |
| Cow position: | chr23:24560360-24560091 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 234 |
| Conread position: | 1-285 |
| Cow position: | chr23:24522458-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-298 |
| Cow position: | chr23:25698378-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 1-305 |
| Cow position: | chr23:25724017-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 190, 198 |
| Conread position: | 1-317 |
| Cow position: | chr23:24560444-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 1-317 |
| Cow position: | chr23:25626725-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-318 |
| Cow position: | chr23:25660429-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-319 |
| Cow position: | chr23:25698546-25698228 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 187, 198 |
| Conread position: | 1-322 |
| Cow position: | chr23:24654059-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-334 |
| Cow position: | chr23:24626418-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 1-334 |
| Cow position: | chr23:24639746-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-348 |
| Cow position: | chr23:24522542-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 0 |
| Conread position: | 1-350 |
| Cow position: | chr23:25626140-25626489 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 301, 296 |
| Conread position: | 1-381 |
| Cow position: | chr23:25626641-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 316 |
| Conread position: | 1-388 |
| Cow position: | chr23:24536019-24535632 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-388 |
| Cow position: | chr23:24547052-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-388 |
| Cow position: | chr23:24560528-24560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-388 |
| Cow position: | chr23:24626334-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-388 |
| Cow position: | chr23:24639494-24639881 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-388 |
| Cow position: | chr23:25626224-25626608 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 305, 310 |
| Conread position: | 1-391 |
| Cow position: | chr23:24639662-24640052 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 260 |
| Conread position: | 1-394 |
| Cow position: | chr23:24547136-24546743 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 271 |
| Conread position: | 1-394 |
| Cow position: | chr23:24547220-24546827 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 347 |
| Conread position: | 1-394 |
| Cow position: | chr23:24560696-24560303 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-394 |
| Cow position: | chr23:24639242-24639635 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 139, 147 |
| Conread position: | 1-394 |
| Cow position: | chr23:24639578-24639971 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-394 |
| Cow position: | chr23:25698630-25698237 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 322 |
| Conread position: | 1-395 |
| Cow position: | chr23:24535851-24535457 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 1-396 |
| Cow position: | chr23:24522707-24522315 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 1-396 |
| Cow position: | chr23:24560612-24560217 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-396 |
| Cow position: | chr23:24560780-24560385 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-396 |
| Cow position: | chr23:24560864-24560469 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-396 |
| Cow position: | chr23:25626560-25626953 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 26 |
| Conread position: | 1-397 |
| Cow position: | chr23:25626056-25626452 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-316 |
| Cow position: | chr23:24535765-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 188, 195 |
| Conread position: | 3-391 |
| Cow position: | chr23:25660347-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 4-388 |
| Cow position: | chr23:25724099-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 367 |
| Conread position: | 4-394 |
| Cow position: | chr23:24547302-24546911 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 4-394 |
| Cow position: | chr23:25660263-25660654 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 23-351 |
| Cow position: | chr23:25625994-25626322 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-395 |
| Cow position: | chr23:24626201-24626561 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 103, 42 |
| Conread position: | 25-394 |
| Cow position: | chr23:24626274-24626643 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 38-388 |
| Cow position: | chr23:25698677-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 67-298 |
| Cow position: | chr23:24521971-24521738 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 68-393 |
| Cow position: | chr23:24654042-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 196 |
| Conread position: | 73-396 |
| Cow position: | chr23:24560876-24560553 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-388 |
| Cow position: | chr23:24547315-24547001 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 75-350 |
| Cow position: | chr23:24639232-24639507 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 75-394 |
| Cow position: | chr23:24536029-24535710 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-394 |
| Cow position: | chr23:25660167-25660486 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 195, 208 |
| Conread position: | 81-396 |
| Cow position: | chr23:25724105-25723790 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 291, 281 |
| Conread position: | 104-394 |
| Cow position: | chr23:25625991-25626281 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 85, 90 |
| Conread position: | 123-396 |
| Cow position: | chr23:24560910-24560637 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-349 |
| Cow position: | chr23:25660146-25660357 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-394 |
| Cow position: | chr23:24536050-24535794 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-388 |
| Cow position: | chr23:24547334-24547085 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 220, 214 |
| Conread position: | 153-394 |
| Cow position: | chr23:24654043-24654284 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.