Cow genome map

Conread name: Pla1-C0001062_A21

Conread position: 1-220
Cow position: chr25:346641-346860 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-220
Cow position: chr25:33299596-33299815 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-220
Cow position: chr25:34732415-34732196 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 146
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 173, 197

Conread position: 1-225
Cow position: chr25:33145207-33145431 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 23

Conread position: 1-260
Cow position: chr25:33305693-33305433 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 21

Conread position: 1-265
Cow position: chr25:33145123-33145387 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 117, 122

Conread position: 1-304
Cow position: chr25:366750-367053 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-304
Cow position: chr25:23420576-23420879 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-309
Cow position: chr25:34714227-34714535 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 193
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-318
Cow position: chr25:326948-327265 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 123, 110

Conread position: 1-321
Cow position: chr25:33127911-33128231 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-322
Cow position: chr25:346473-346794 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 202
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 161, 168

Conread position: 1-322
Cow position: chr25:34732079-34731757 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 209
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 89, 100

Conread position: 1-331
Cow position: chr25:33305294-33304967 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 213
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 250, 176

Conread position: 1-339
Cow position: chr25:23420492-23420830 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-343
Cow position: chr25:33145039-33145381 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 192

Conread position: 1-343
Cow position: chr25:33157112-33156770 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 315

Conread position: 1-343
Cow position: chr25:33299176-33299518 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 1-343
Cow position: chr25:33299428-33299770 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-343
Cow position: chr25:36801076-36801406 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 223
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 26

Conread position: 1-343
Cow position: chr25:36801568-36801910 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-348
Cow position: chr25:33298672-33299020 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 1-350
Cow position: chr25:34447383-34447730 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 219

Conread position: 1-350
Cow position: chr25:34713891-34714240 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 227
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 15, 25

Conread position: 1-351
Cow position: chr25:34447215-34447565 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 260

Conread position: 1-357
Cow position: chr25:34769595-34769238 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 0

Conread position: 1-391
Cow position: chr25:33127743-33128133 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-391
Cow position: chr25:33127827-33128217 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-391
Cow position: chr25:34433630-34434017 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 246
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 138, 129

Conread position: 1-391
Cow position: chr25:34446963-34447353 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-392
Cow position: chr25:34447299-34447690 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 195

Conread position: 1-394
Cow position: chr25:33144874-33145264 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 255
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 144, 137

Conread position: 1-394
Cow position: chr25:33157364-33156971 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 268

Conread position: 1-394
Cow position: chr25:33298588-33298981 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 113

Conread position: 1-394
Cow position: chr25:33298840-33299233 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:33298924-33299317 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 258
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 122, 110

Conread position: 1-394
Cow position: chr25:33299008-33299401 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 347

Conread position: 1-394
Cow position: chr25:33299092-33299485 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 24

Conread position: 1-394
Cow position: chr25:33299344-33299737 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:33305939-33305552 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 249
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 102, 119

Conread position: 1-394
Cow position: chr25:34447047-34447440 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:34447131-34447524 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:34762854-34763244 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 240
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 22

Conread position: 1-394
Cow position: chr25:34763271-34763661 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 237
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 289, 181

Conread position: 1-394
Cow position: chr25:34769763-34769370 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:34769847-34769454 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:34770099-34769706 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr25:36800656-36801049 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 246
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 215, 220

Conread position: 1-394
Cow position: chr25:36801400-36801793 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 247
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 112, 99

Conread position: 1-395
Cow position: chr25:33306273-33305881 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 247
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 182, 84

Conread position: 1-396
Cow position: chr25:23420408-23420803 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr25:34769679-34769284 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 262

Conread position: 1-396
Cow position: chr25:34770015-34769620 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-298
Cow position: chr25:18641489-18641192 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 195
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 191

Conread position: 2-349
Cow position: chr25:34714142-34714491 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 3-344
Cow position: chr25:36800994-36801335 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 220
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 120, 108

Conread position: 3-388
Cow position: chr25:36800826-36801211 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 3-394
Cow position: chr25:33127661-33128052 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 24

Conread position: 3-394
Cow position: chr25:33157194-33156803 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-396
Cow position: chr25:33157278-33156885 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-396
Cow position: chr25:34769929-34769536 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-394
Cow position: chr25:23420327-23420717 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-267
Cow position: chr25:34433239-34433497 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 134, 0

Conread position: 7-349
Cow position: chr25:34732157-34731815 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 215
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 167, 177

Conread position: 8-394
Cow position: chr25:33298511-33298897 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 48

Conread position: 8-394
Cow position: chr25:36800579-36800965 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 242
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 9-321
Cow position: chr25:25652557-25652869 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 194
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 100

Conread position: 11-370
Cow position: chr25:25652391-25652750 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 226
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 279, 263

Conread position: 11-394
Cow position: chr25:33157438-33157055 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 266

Conread position: 11-394
Cow position: chr25:34763197-34763577 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 227
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 254, 0

Conread position: 21-394
Cow position: chr25:33157512-33157139 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 248

Conread position: 21-394
Cow position: chr25:34770163-34769790 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 38

Conread position: 23-270
Cow position: chr25:34432983-34433231 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 243, 0

Conread position: 23-388
Cow position: chr25:36801338-36801703 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 229
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 178, 164

Conread position: 24-265
Cow position: chr25:33306333-33306098 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 24-340
Cow position: chr25:18642207-18641888 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 0

Conread position: 24-396
Cow position: chr25:33305354-33304986 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 192, 36

Conread position: 25-351
Cow position: chr25:34714083-34714409 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 214
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 164, 169

Conread position: 31-391
Cow position: chr25:34433495-34433852 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 232
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 266, 111

Conread position: 31-394
Cow position: chr25:36800518-36800881 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 215
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 35-394
Cow position: chr25:33305425-33305073 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 234
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 21, 0

Conread position: 38-394
Cow position: chr25:33299297-33299653 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 323

Conread position: 38-394
Cow position: chr25:36801521-36801877 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 302, 323

Conread position: 39-331
Cow position: chr25:33305172-33304884 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 130, 55

Conread position: 39-389
Cow position: chr25:366704-367054 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 226
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 181, 171

Conread position: 39-393
Cow position: chr25:33305819-33305468 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 175, 95

Conread position: 40-396
Cow position: chr25:33298387-33298731 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 231
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 70

Conread position: 41-396
Cow position: chr25:36800444-36800799 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 216
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 59, 75

Conread position: 54-322
Cow position: chr25:36844626-36844358 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 60-394
Cow position: chr25:22235829-22236163 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 207
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 61-340
Cow position: chr25:34714035-34714314 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 63-367
Cow position: chr25:3663934-3664238 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 193
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 63-394
Cow position: chr25:326926-327257 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 212
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 145, 133

Conread position: 74-349
Cow position: chr25:33144863-33145135 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 155, 148

Conread position: 75-388
Cow position: chr25:34446953-34447266 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 201, 197

Conread position: 81-394
Cow position: chr25:23420320-23420633 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 83-394
Cow position: chr25:33157533-33157223 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 95-367
Cow position: chr25:34446889-34447161 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 175
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 39

Conread position: 107-333
Cow position: chr25:34432983-34433209 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 159-396
Cow position: chr25:33127733-33127970 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 198-396
Cow position: chr25:33157503-33157305 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.