Cow genome map
| Conread name: | Pla1-C0001062_A21 |
| Conread position: | 1-266 |
| Cow position: | chr28:9290444-9290707 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-310 |
| Cow position: | chr28:7758601-7758910 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 234, 176 |
| Conread position: | 1-317 |
| Cow position: | chr28:9253296-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 219 |
| Conread position: | 1-318 |
| Cow position: | chr28:9299246-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr28:33210337-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 225, 0 |
| Conread position: | 1-323 |
| Cow position: | chr28:7758433-7758755 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-328 |
| Cow position: | chr28:11333860-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-329 |
| Cow position: | chr28:9298842-9299168 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 1-331 |
| Cow position: | chr28:34679535-34679202 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 1-332 |
| Cow position: | chr28:7810616-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 193 |
| Conread position: | 1-342 |
| Cow position: | chr28:9290361-9290700 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-349 |
| Cow position: | chr28:34673464-34673812 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 123, 104 |
| Conread position: | 1-388 |
| Cow position: | chr28:7757945-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 203, 195 |
| Conread position: | 1-388 |
| Cow position: | chr28:11333776-11333395 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-389 |
| Cow position: | chr28:7810457-7810836 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-393 |
| Cow position: | chr28:7810289-7810672 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 1-394 |
| Cow position: | chr28:7757357-7757750 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 189 |
| Conread position: | 1-394 |
| Cow position: | chr28:7757525-7757918 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 260 |
| Conread position: | 1-394 |
| Cow position: | chr28:7757609-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-394 |
| Cow position: | chr28:7757693-7758086 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 1-394 |
| Cow position: | chr28:7810373-7810757 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 213, 165 |
| Conread position: | 1-394 |
| Cow position: | chr28:9253044-9253437 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 1-394 |
| Cow position: | chr28:9298759-9299149 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 1-394 |
| Cow position: | chr28:11334112-11333719 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-395 |
| Cow position: | chr28:9290277-9290669 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 98 |
| Conread position: | 1-396 |
| Cow position: | chr28:7757279-7757668 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-396 |
| Cow position: | chr28:7757441-7757836 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 357 |
| Conread position: | 1-396 |
| Cow position: | chr28:7757777-7758172 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-396 |
| Cow position: | chr28:7757861-7758256 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 279 |
| Conread position: | 1-396 |
| Cow position: | chr28:9253128-9253523 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 357 |
| Conread position: | 1-396 |
| Cow position: | chr28:9253212-9253607 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-396 |
| Cow position: | chr28:9298675-9299067 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 1-396 |
| Cow position: | chr28:9298926-9299305 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-396 |
| Cow position: | chr28:34695853-34696248 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 133, 111 |
| Conread position: | 2-394 |
| Cow position: | chr28:9289782-9290170 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 204, 101 |
| Conread position: | 3-181 |
| Cow position: | chr28:34696359-34696537 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-394 |
| Cow position: | chr28:9252962-9253353 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 11-348 |
| Cow position: | chr28:33210263-33210602 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 298, 0 |
| Conread position: | 12-391 |
| Cow position: | chr28:34679607-34679226 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 24-396 |
| Cow position: | chr28:7810555-7810927 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 337 |
| Conread position: | 30-350 |
| Cow position: | chr28:9299194-9299511 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 237, 20 |
| Conread position: | 30-396 |
| Cow position: | chr28:9290142-9290502 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 81, 66 |
| Conread position: | 31-285 |
| Cow position: | chr28:34679334-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 34-394 |
| Cow position: | chr28:9289892-9290252 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 164, 60 |
| Conread position: | 34-396 |
| Cow position: | chr28:9252908-9253271 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 38-394 |
| Cow position: | chr28:34673417-34673773 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 39-394 |
| Cow position: | chr28:7758387-7758742 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 322 |
| Conread position: | 59-396 |
| Cow position: | chr28:33210227-33210564 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 81-329 |
| Cow position: | chr28:7810285-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-396 |
| Cow position: | chr28:7758387-7758660 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.