Cow genome map

Conread name: Pla1-C0001062_A21

Conread position: 1-233
Cow position: chr7:42878495-42878263 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-244
Cow position: chr7:8278125-8278368 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 117, 108

Conread position: 1-265
Cow position: chr7:8325850-8326114 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 128, 102

Conread position: 1-284
Cow position: chr7:1438442-1438724 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 26

Conread position: 1-304
Cow position: chr7:1014298-1014601 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 275, 267

Conread position: 1-321
Cow position: chr7:1015132-1015452 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 1-349
Cow position: chr7:8277789-8278137 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 122, 105

Conread position: 1-349
Cow position: chr7:8324758-8325106 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 60, 19

Conread position: 1-349
Cow position: chr7:8324926-8325274 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 222
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 21

Conread position: 1-349
Cow position: chr7:18390187-18390535 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-349
Cow position: chr7:18390271-18390619 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-349
Cow position: chr7:18390439-18390787 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 227
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-350
Cow position: chr7:1438190-1438539 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 255, 269

Conread position: 1-350
Cow position: chr7:1439916-1440264 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 222
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 55, 0

Conread position: 1-351
Cow position: chr7:8243411-8243761 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 218
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 32, 22

Conread position: 1-351
Cow position: chr7:8243747-8244094 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 225
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 269, 254

Conread position: 1-388
Cow position: chr7:1015048-1015435 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-388
Cow position: chr7:18390355-18390742 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 219

Conread position: 1-394
Cow position: chr7:1014466-1014853 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 241
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 179, 0

Conread position: 1-394
Cow position: chr7:1014712-1015105 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:1014796-1015189 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 198

Conread position: 1-394
Cow position: chr7:1014964-1015357 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 31

Conread position: 1-394
Cow position: chr7:3179806-3180199 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:3179974-3180367 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:3180058-3180451 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:3180142-3180535 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 260

Conread position: 1-394
Cow position: chr7:3180226-3180619 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:3180394-3180787 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:8325514-8325907 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 253
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 122, 102

Conread position: 1-394
Cow position: chr7:8325682-8326075 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 263
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 28, 15

Conread position: 1-394
Cow position: chr7:11600826-11600432 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 0

Conread position: 1-394
Cow position: chr7:11600994-11600601 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 18

Conread position: 1-394
Cow position: chr7:11601078-11600685 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 102

Conread position: 1-394
Cow position: chr7:42878831-42878438 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:42878915-42878522 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-394
Cow position: chr7:42878999-42878606 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 262

Conread position: 1-394
Cow position: chr7:42879251-42878858 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr7:3180478-3180872 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 23

Conread position: 1-396
Cow position: chr7:8277369-8277764 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 252
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 281, 275

Conread position: 1-396
Cow position: chr7:18390019-18390414 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 245
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 104, 115

Conread position: 1-396
Cow position: chr7:42878663-42878267 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 0

Conread position: 1-396
Cow position: chr7:42878747-42878352 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 360

Conread position: 1-396
Cow position: chr7:42879083-42878688 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-396
Cow position: chr7:42879167-42878772 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 360

Conread position: 2-350
Cow position: chr7:1438359-1438707 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 3-394
Cow position: chr7:3179724-3180115 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-394
Cow position: chr7:3179892-3180283 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 275

Conread position: 3-394
Cow position: chr7:3180312-3180703 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 190

Conread position: 4-266
Cow position: chr7:1440002-1440264 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 4-396
Cow position: chr7:1439835-1440226 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 0

Conread position: 5-394
Cow position: chr7:1014386-1014769 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 255
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 259, 0

Conread position: 6-394
Cow position: chr7:1438279-1438667 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 238
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 6-394
Cow position: chr7:11601157-11600769 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 255

Conread position: 24-394
Cow position: chr7:1014903-1015273 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 91

Conread position: 28-394
Cow position: chr7:1014655-1015021 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 73, 78

Conread position: 31-394
Cow position: chr7:42879305-42878942 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-394
Cow position: chr7:8243609-8243972 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 231
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 11, 242

Conread position: 37-343
Cow position: chr7:8277741-8278047 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 201
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 254, 224

Conread position: 37-394
Cow position: chr7:8325130-8325487 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 90, 69

Conread position: 37-395
Cow position: chr7:11601210-11600851 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 356, 0

Conread position: 38-343
Cow position: chr7:8243281-8243585 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 189
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 163, 99

Conread position: 38-349
Cow position: chr7:8277658-8277969 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 77, 65

Conread position: 38-349
Cow position: chr7:8325299-8325610 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 71, 85

Conread position: 38-350
Cow position: chr7:8325383-8325695 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 86, 68

Conread position: 38-352
Cow position: chr7:8325635-8325949 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 204
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 38-394
Cow position: chr7:1439703-1440056 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 229
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 61, 65

Conread position: 38-394
Cow position: chr7:8277910-8278266 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 231
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 85, 72

Conread position: 39-271
Cow position: chr7:11434508-11434276 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-349
Cow position: chr7:8242946-8243256 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 192
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 218, 224

Conread position: 39-394
Cow position: chr7:28846570-28846925 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 217
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 72

Conread position: 42-346
Cow position: chr7:8277997-8278302 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 210
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 6, 65

Conread position: 43-394
Cow position: chr7:11600868-11600517 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 227

Conread position: 44-389
Cow position: chr7:1014257-1014602 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 225
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 260, 250

Conread position: 52-394
Cow position: chr7:18390154-18390496 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 68, 57

Conread position: 56-334
Cow position: chr7:8243382-8243660 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 61, 47

Conread position: 56-351
Cow position: chr7:8277256-8277551 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 187
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 44

Conread position: 63-346
Cow position: chr7:8324736-8325019 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 40

Conread position: 64-394
Cow position: chr7:18389997-18390328 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 215
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 8, 219

Conread position: 75-394
Cow position: chr7:3179712-3180031 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 95-349
Cow position: chr7:1014224-1014478 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 160, 168

Conread position: 118-394
Cow position: chr7:3179671-3179947 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 25

Conread position: 122-349
Cow position: chr7:1439448-1439673 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 139, 0

Conread position: 206-397
Cow position: chr7:1439448-1439636 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 148, 0

Show alignments to all cow chromosomes.