Cow genome map

Conread name: Spl1-SPL010001B10

Conread position: 2-250
Cow position: chr1:68854532-68854278 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 27

Conread position: 2-314
Cow position: chr1:13579197-13579518 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 27

Conread position: 5-130
Cow position: chr1:8514853-8514725 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 24

Conread position: 5-144
Cow position: chr1:80974651-80974793 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 24

Conread position: 5-159
Cow position: chr1:23370986-23371139 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 118, 27

Conread position: 5-166
Cow position: chr1:85163738-85163903 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 49

Conread position: 5-169
Cow position: chr1:86574404-86574238 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 24

Conread position: 5-170
Cow position: chr1:21132281-21132448 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 21

Conread position: 5-171
Cow position: chr1:44229793-44229618 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 24

Conread position: 5-175
Cow position: chr1:81356716-81356889 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 24

Conread position: 5-176
Cow position: chr1:28413259-28413431 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 24

Conread position: 5-188
Cow position: chr1:15049380-15049195 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 115, 24

Conread position: 5-190
Cow position: chr1:35785357-35785159 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 39, 24

Conread position: 5-190
Cow position: chr1:44836939-44837134 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 56, 24

Conread position: 5-198
Cow position: chr1:47923284-47923484 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 28

Conread position: 5-199
Cow position: chr1:12465450-12465639 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 118, 24

Conread position: 5-201
Cow position: chr1:38479189-38478984 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 39, 50

Conread position: 5-206
Cow position: chr1:67188844-67189061 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 5-209
Cow position: chr1:77461708-77461503 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 50, 24

Conread position: 5-213
Cow position: chr1:17435824-17436040 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 28

Conread position: 5-213
Cow position: chr1:55019241-55019030 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 27

Conread position: 5-221
Cow position: chr1:31238606-31238835 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 178
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 32, 217

Conread position: 5-221
Cow position: chr1:55203330-55203557 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 5-222
Cow position: chr1:29901672-29901875 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 118, 13

Conread position: 5-223
Cow position: chr1:66242487-66242710 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 118, 24

Conread position: 5-224
Cow position: chr1:7196932-7196704 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 69, 33

Conread position: 5-227
Cow position: chr1:99628505-99628730 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 24

Conread position: 5-230
Cow position: chr1:73433920-73434160 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 32, 0

Conread position: 5-230
Cow position: chr1:81320749-81320983 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 39, 24

Conread position: 5-234
Cow position: chr1:87830822-87830590 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 117, 27

Conread position: 5-236
Cow position: chr1:58340492-58340252 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 39, 50

Conread position: 5-238
Cow position: chr1:71666896-71667146 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 37, 23

Conread position: 5-238
Cow position: chr1:97075923-97076165 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 39, 0

Conread position: 5-239
Cow position: chr1:73017893-73018134 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 24

Conread position: 5-241
Cow position: chr1:57946510-57946263 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 66, 33

Conread position: 5-241
Cow position: chr1:82163219-82163466 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 50, 24

Conread position: 5-242
Cow position: chr1:56644311-56644559 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 25

Conread position: 5-247
Cow position: chr1:3440540-3440289 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 178

Conread position: 5-247
Cow position: chr1:76748819-76749066 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 191
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 118, 39

Conread position: 5-248
Cow position: chr1:12057674-12057925 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 39, 50

Conread position: 5-250
Cow position: chr1:19793277-19793025 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 10, 25

Conread position: 5-250
Cow position: chr1:60280107-60279859 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 40, 24

Conread position: 5-267
Cow position: chr1:6765524-6765791 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 40, 196

Conread position: 5-275
Cow position: chr1:98559491-98559213 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 24

Conread position: 5-278
Cow position: chr1:70864821-70864547 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 118, 24

Conread position: 5-279
Cow position: chr1:36645878-36646157 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 50

Conread position: 5-280
Cow position: chr1:4515153-4515431 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 23

Conread position: 5-281
Cow position: chr1:30531456-30531731 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 118, 21

Conread position: 5-282
Cow position: chr1:8602398-8602685 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr1:18196173-18195886 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 54, 27

Conread position: 5-282
Cow position: chr1:25053009-25053296 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr1:26811497-26811783 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 31, 49

Conread position: 5-282
Cow position: chr1:29429182-29428890 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr1:30079519-30079232 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 29

Conread position: 5-282
Cow position: chr1:32562961-32563244 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 29

Conread position: 5-282
Cow position: chr1:42740274-42739987 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-282
Cow position: chr1:57571410-57571123 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr1:61342132-61342415 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 118, 27

Conread position: 5-282
Cow position: chr1:67831557-67831845 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 33

Conread position: 5-282
Cow position: chr1:78291135-78290849 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 39, 240

Conread position: 5-282
Cow position: chr1:79334409-79334696 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 38, 50

Conread position: 5-282
Cow position: chr1:88179438-88179149 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 60, 27

Conread position: 5-282
Cow position: chr1:89185890-89186167 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 118, 39

Conread position: 5-282
Cow position: chr1:99837773-99838060 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr1:100591195-100591481 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr1:100887930-100888217 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 39, 0

Conread position: 5-283
Cow position: chr1:61746603-61746882 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 31, 213

Conread position: 5-283
Cow position: chr1:100451101-100451381 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 5-284
Cow position: chr1:73463543-73463254 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 69, 33

Conread position: 5-284
Cow position: chr1:85773783-85773495 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 24

Conread position: 5-285
Cow position: chr1:16973545-16973824 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-285
Cow position: chr1:21507514-21507800 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 118, 24

Conread position: 5-285
Cow position: chr1:89484669-89484385 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-286
Cow position: chr1:9376801-9377084 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 83

Conread position: 5-286
Cow position: chr1:56425490-56425200 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 275

Conread position: 5-286
Cow position: chr1:57574009-57574299 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 27

Conread position: 5-286
Cow position: chr1:58192228-58192519 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 39, 50

Conread position: 5-286
Cow position: chr1:74939301-74939024 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 118, 33

Conread position: 5-287
Cow position: chr1:10005414-10005702 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 118, 27

Conread position: 5-287
Cow position: chr1:19145583-19145883 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 45, 22

Conread position: 5-288
Cow position: chr1:51967819-51967534 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 22

Conread position: 5-288
Cow position: chr1:57678805-57679093 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-289
Cow position: chr1:38545139-38545432 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-291
Cow position: chr1:5505516-5505221 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-291
Cow position: chr1:9262074-9261778 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 5-291
Cow position: chr1:11854370-11854662 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 30, 23

Conread position: 5-291
Cow position: chr1:23099208-23098919 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 40, 24

Conread position: 5-291
Cow position: chr1:25553381-25553086 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 39, 0

Conread position: 5-291
Cow position: chr1:46694333-46694625 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 24

Conread position: 5-291
Cow position: chr1:52054398-52054102 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 24

Conread position: 5-291
Cow position: chr1:53650227-53649934 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-291
Cow position: chr1:55273466-55273760 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 61, 23

Conread position: 5-291
Cow position: chr1:55780446-55780153 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 5-291
Cow position: chr1:56746462-56746166 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 5-291
Cow position: chr1:57362755-57363051 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-291
Cow position: chr1:63044580-63044875 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 24

Conread position: 5-291
Cow position: chr1:93858100-93857804 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 40, 0

Conread position: 5-292
Cow position: chr1:69770396-69770100 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-292
Cow position: chr1:89766954-89767247 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 26, 11

Conread position: 5-292
Cow position: chr1:92279247-92279525 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 24

Conread position: 5-293
Cow position: chr1:3340250-3339946 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 5-293
Cow position: chr1:13718261-13718557 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 267

Conread position: 5-293
Cow position: chr1:24580974-24580686 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 16

Conread position: 5-293
Cow position: chr1:26446725-26446434 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-293
Cow position: chr1:30281247-30281544 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 49, 28

Conread position: 5-293
Cow position: chr1:32960921-32961223 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 69, 33

Conread position: 5-293
Cow position: chr1:40681153-40681451 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 254

Conread position: 5-293
Cow position: chr1:42887925-42888202 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 26

Conread position: 5-293
Cow position: chr1:61331385-61331683 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 5-293
Cow position: chr1:61747875-61748170 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 27

Conread position: 5-293
Cow position: chr1:72139772-72139472 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 5-293
Cow position: chr1:72306780-72307041 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 67, 24

Conread position: 5-293
Cow position: chr1:73968090-73967792 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 69, 28

Conread position: 5-293
Cow position: chr1:83060064-83060361 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-293
Cow position: chr1:83170020-83169722 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 32

Conread position: 5-293
Cow position: chr1:84449203-84448905 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 69, 27

Conread position: 5-293
Cow position: chr1:85795520-85795227 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-293
Cow position: chr1:86544561-86544858 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-293
Cow position: chr1:90622654-90622944 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-293
Cow position: chr1:92196551-92196257 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 5-293
Cow position: chr1:95456929-95456632 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 32, 126

Conread position: 5-293
Cow position: chr1:99117592-99117295 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 5-293
Cow position: chr1:102784105-102783817 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 5-296
Cow position: chr1:70387751-70388050 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 24

Conread position: 5-298
Cow position: chr1:28176326-28176031 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 118, 28

Conread position: 5-300
Cow position: chr1:24595162-24594879 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 118, 24

Conread position: 5-300
Cow position: chr1:85338427-85338144 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 121, 17

Conread position: 5-301
Cow position: chr1:18024242-18024546 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 10, 25

Conread position: 5-302
Cow position: chr1:2744674-2744380 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 27, 50

Conread position: 5-302
Cow position: chr1:17938175-17938483 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 29

Conread position: 5-302
Cow position: chr1:42875082-42875385 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 27

Conread position: 5-302
Cow position: chr1:47454403-47454708 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 49

Conread position: 5-302
Cow position: chr1:57759487-57759184 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 40, 50

Conread position: 5-303
Cow position: chr1:13404807-13405116 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 39, 119

Conread position: 5-303
Cow position: chr1:82091473-82091164 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-303
Cow position: chr1:95474332-95474632 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-304
Cow position: chr1:3263567-3263258 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 46, 24

Conread position: 5-304
Cow position: chr1:3930762-3931071 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 60, 27

Conread position: 5-304
Cow position: chr1:4375225-4375515 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 24

Conread position: 5-304
Cow position: chr1:6165553-6165251 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 18

Conread position: 5-304
Cow position: chr1:7837179-7837492 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 20, 108

Conread position: 5-304
Cow position: chr1:8828598-8828290 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:10034105-10033807 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 205
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 24

Conread position: 5-304
Cow position: chr1:13250967-13251276 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 32

Conread position: 5-304
Cow position: chr1:16116822-16117130 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 253

Conread position: 5-304
Cow position: chr1:19440966-19441271 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-304
Cow position: chr1:21376982-21377289 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 31, 15

Conread position: 5-304
Cow position: chr1:28876675-28876366 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 27

Conread position: 5-304
Cow position: chr1:29038118-29037809 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 28

Conread position: 5-304
Cow position: chr1:33547823-33548132 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:38712290-38711981 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:39234929-39235234 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 28

Conread position: 5-304
Cow position: chr1:52355095-52355403 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 5-304
Cow position: chr1:52754956-52755263 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 39, 204

Conread position: 5-304
Cow position: chr1:54933505-54933197 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 5-304
Cow position: chr1:55043686-55043993 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:56170537-56170229 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 28

Conread position: 5-304
Cow position: chr1:56190841-56191149 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:59483285-59483594 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:62507667-62507980 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 39, 126

Conread position: 5-304
Cow position: chr1:63602210-63602519 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:64941971-64942267 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 144

Conread position: 5-304
Cow position: chr1:66491155-66490850 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 33

Conread position: 5-304
Cow position: chr1:67078249-67078557 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:69671043-69671352 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 24

Conread position: 5-304
Cow position: chr1:70051798-70051508 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 118, 29

Conread position: 5-304
Cow position: chr1:73761968-73762276 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-304
Cow position: chr1:76617897-76618205 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr1:78921435-78921744 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-304
Cow position: chr1:79453182-79453491 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 5-304
Cow position: chr1:82909255-82909562 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 51, 192

Conread position: 5-304
Cow position: chr1:89112393-89112092 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 27

Conread position: 5-304
Cow position: chr1:89492659-89492961 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 39, 191

Conread position: 5-304
Cow position: chr1:90913407-90913098 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr1:91889829-91890122 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 118, 47

Conread position: 5-304
Cow position: chr1:91902597-91902288 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 28

Conread position: 5-305
Cow position: chr1:12468220-12468524 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 24

Conread position: 5-305
Cow position: chr1:16797527-16797828 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 54, 27

Conread position: 5-305
Cow position: chr1:34858118-34858409 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 224
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 118, 23

Conread position: 5-305
Cow position: chr1:39112283-39111982 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 39, 24

Conread position: 5-305
Cow position: chr1:52371550-52371240 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-305
Cow position: chr1:71792507-71792198 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 50

Conread position: 5-305
Cow position: chr1:72987033-72986726 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 31, 48

Conread position: 5-305
Cow position: chr1:86505775-86506077 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 31, 24

Conread position: 5-305
Cow position: chr1:94663231-94662921 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 39, 50

Conread position: 5-307
Cow position: chr1:14240489-14240801 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-307
Cow position: chr1:28811664-28811976 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-307
Cow position: chr1:102431165-102431473 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 118, 39

Conread position: 5-308
Cow position: chr1:4337335-4337032 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 156, 27

Conread position: 5-308
Cow position: chr1:20543800-20543492 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-308
Cow position: chr1:22012385-22012696 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 27, 140

Conread position: 5-309
Cow position: chr1:20001430-20001730 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-309
Cow position: chr1:51980549-51980249 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 24

Conread position: 5-309
Cow position: chr1:79632978-79633288 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 5-314
Cow position: chr1:23117630-23117947 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-315
Cow position: chr1:7416063-7415744 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 5-315
Cow position: chr1:31352055-31352368 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 5-318
Cow position: chr1:71045082-71044762 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 5-321
Cow position: chr1:55327667-55327986 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 24

Conread position: 5-322
Cow position: chr1:56475573-56475251 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-322
Cow position: chr1:98988849-98989176 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 27

Conread position: 5-323
Cow position: chr1:61221008-61220682 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 6

Conread position: 5-324
Cow position: chr1:46821192-46820862 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 26, 51

Conread position: 5-324
Cow position: chr1:77657117-77656793 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 118, 27

Conread position: 5-331
Cow position: chr1:3382741-3383077 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 60, 39

Conread position: 5-331
Cow position: chr1:6196702-6197036 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 60, 23

Conread position: 5-331
Cow position: chr1:21113846-21114181 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 38, 24

Conread position: 5-331
Cow position: chr1:28677623-28677298 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 5-331
Cow position: chr1:65390135-65389799 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-332
Cow position: chr1:22253647-22253311 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 22

Conread position: 5-332
Cow position: chr1:37323704-37324034 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 5-338
Cow position: chr1:42554575-42554241 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 118, 24

Conread position: 5-351
Cow position: chr1:68950977-68950631 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 6-221
Cow position: chr1:30372471-30372246 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 38, 49

Conread position: 6-238
Cow position: chr1:68252906-68252665 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 26

Conread position: 6-268
Cow position: chr1:9438719-9438986 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 27

Conread position: 6-282
Cow position: chr1:101008284-101008562 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 26

Conread position: 6-285
Cow position: chr1:53520229-53519950 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 115, 12

Conread position: 6-304
Cow position: chr1:55158805-55159114 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 53, 39

Conread position: 6-304
Cow position: chr1:86599434-86599746 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 26

Conread position: 7-190
Cow position: chr1:64972983-64972803 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 25

Conread position: 7-242
Cow position: chr1:53371944-53371700 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 36, 25

Conread position: 7-282
Cow position: chr1:85776886-85777168 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 52, 37

Conread position: 7-285
Cow position: chr1:90393181-90393469 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 51, 25

Conread position: 7-302
Cow position: chr1:67290193-67289890 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 261

Conread position: 7-304
Cow position: chr1:68602054-68602361 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 7-304
Cow position: chr1:72766462-72766767 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 26

Conread position: 7-307
Cow position: chr1:92920661-92920970 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 8-193
Cow position: chr1:88338017-88337824 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 46

Conread position: 8-281
Cow position: chr1:73063763-73064046 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 47

Conread position: 8-284
Cow position: chr1:29461901-29461617 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 21

Conread position: 8-304
Cow position: chr1:69406733-69406427 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 47

Conread position: 9-293
Cow position: chr1:44127279-44127561 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 20

Conread position: 10-256
Cow position: chr1:24921941-24922191 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 19

Conread position: 10-270
Cow position: chr1:94464683-94464416 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 49, 19

Conread position: 10-304
Cow position: chr1:20798397-20798089 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 49, 19

Conread position: 11-278
Cow position: chr1:95765812-95766085 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 112, 18

Conread position: 11-282
Cow position: chr1:4452514-4452796 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 18

Conread position: 11-292
Cow position: chr1:24780910-24781199 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 18

Conread position: 11-293
Cow position: chr1:44078851-44079138 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 42

Conread position: 11-307
Cow position: chr1:31316907-31317210 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 21

Conread position: 13-190
Cow position: chr1:92433352-92433174 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 110

Conread position: 13-293
Cow position: chr1:16573358-16573637 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 110, 18

Conread position: 13-304
Cow position: chr1:72087169-72086868 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 42

Conread position: 16-228
Cow position: chr1:41736312-41736528 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 107, 18

Conread position: 16-229
Cow position: chr1:36235189-36235409 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 106, 15

Conread position: 18-293
Cow position: chr1:61563614-61563317 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 11

Conread position: 18-305
Cow position: chr1:52379858-52379561 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 26, 37

Conread position: 18-307
Cow position: chr1:68846156-68846444 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 28

Conread position: 19-145
Cow position: chr1:79843734-79843607 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 17

Conread position: 20-213
Cow position: chr1:76700182-76700383 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 20-285
Cow position: chr1:42054017-42054277 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 103, 9

Conread position: 20-291
Cow position: chr1:19483684-19483961 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 26-288
Cow position: chr1:30035173-30034908 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 31, 189

Conread position: 28-290
Cow position: chr1:57970057-57970310 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 17

Conread position: 29-285
Cow position: chr1:99581905-99582171 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 94, 23

Conread position: 34-307
Cow position: chr1:11771233-11771524 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 25, 0

Conread position: 35-285
Cow position: chr1:40088922-40088664 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 88, 239

Conread position: 35-307
Cow position: chr1:40509711-40509991 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 19, 220

Conread position: 36-299
Cow position: chr1:30033815-30033552 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 23, 166

Conread position: 37-293
Cow position: chr1:22727845-22727572 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 38-194
Cow position: chr1:95018520-95018688 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 39-181
Cow position: chr1:90605315-90605460 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 39-304
Cow position: chr1:11288841-11289120 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 35, 24

Conread position: 39-304
Cow position: chr1:43448965-43449243 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 20, 38

Conread position: 39-304
Cow position: chr1:101833939-101833666 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 17, 154

Conread position: 39-305
Cow position: chr1:39479949-39480218 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 87, 183

Conread position: 39-307
Cow position: chr1:70534923-70535197 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 16

Conread position: 40-242
Cow position: chr1:15368095-15368305 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 176

Conread position: 40-280
Cow position: chr1:31341864-31342107 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 195

Conread position: 40-285
Cow position: chr1:72103638-72103402 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 83, 106

Conread position: 40-293
Cow position: chr1:51444785-51444523 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 12

Conread position: 41-241
Cow position: chr1:15333178-15332979 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 10

Conread position: 41-285
Cow position: chr1:82369956-82369706 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 172

Conread position: 41-291
Cow position: chr1:67013551-67013308 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 15

Conread position: 41-293
Cow position: chr1:7739249-7738994 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 48

Conread position: 42-242
Cow position: chr1:31814552-31814347 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 12

Conread position: 42-293
Cow position: chr1:68818372-68818629 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 65

Conread position: 42-304
Cow position: chr1:52510580-52510845 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 13

Conread position: 42-307
Cow position: chr1:55145584-55145311 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 10

Conread position: 43-223
Cow position: chr1:30785989-30786175 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 79, 11

Conread position: 45-296
Cow position: chr1:72803984-72804236 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 78, 7

Conread position: 46-293
Cow position: chr1:72864480-72864230 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 181

Conread position: 46-304
Cow position: chr1:61727551-61727810 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 26, 149

Conread position: 46-307
Cow position: chr1:45006492-45006240 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 77, 40

Conread position: 46-307
Cow position: chr1:58196919-58197172 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 77, 184

Conread position: 47-286
Cow position: chr1:57958022-57958278 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 47-289
Cow position: chr1:20146946-20146699 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 76, 0

Conread position: 47-304
Cow position: chr1:11018980-11018724 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 64, 5

Conread position: 51-307
Cow position: chr1:73870384-73870118 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 72, 0

Conread position: 52-241
Cow position: chr1:102552532-102552336 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 71, 64

Conread position: 52-285
Cow position: chr1:50764675-50764442 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 71, 14

Conread position: 52-304
Cow position: chr1:56726686-56726433 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 56

Conread position: 53-306
Cow position: chr1:61662010-61662270 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 70, 146

Conread position: 54-249
Cow position: chr1:38401147-38400948 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 164
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 80, 126

Conread position: 56-242
Cow position: chr1:25780922-25780730 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 125

Conread position: 57-235
Cow position: chr1:73430847-73431032 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 57-248
Cow position: chr1:22288524-22288326 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 66, 187

Conread position: 57-269
Cow position: chr1:76304117-76304335 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 90, 82

Conread position: 60-293
Cow position: chr1:100536669-100536428 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 66-291
Cow position: chr1:93111835-93112065 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 81, 51

Conread position: 76-231
Cow position: chr1:13638396-13638557 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 33

Conread position: 81-304
Cow position: chr1:29656688-29656455 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 42, 32

Conread position: 87-309
Cow position: chr1:22909361-22909133 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 152

Conread position: 89-307
Cow position: chr1:59634972-59634748 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 73

Conread position: 102-302
Cow position: chr1:31190952-31191153 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 23

Conread position: 122-304
Cow position: chr1:97285203-97285386 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 109

Conread position: 139-286
Cow position: chr1:30440590-30440442 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 86

Conread position: 142-293
Cow position: chr1:34684915-34684766 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 127
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 13, 74

Conread position: 150-307
Cow position: chr1:81357231-81357390 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 135
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 7, 0

Conread position: 156-304
Cow position: chr1:21785899-21785749 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 37

Conread position: 158-304
Cow position: chr1:60342471-60342325 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 85, 30

Conread position: 168-293
Cow position: chr1:28413818-28413944 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 111
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 70

Conread position: 179-293
Cow position: chr1:51393476-51393361 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 101
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 9

Conread position: 195-318
Cow position: chr1:16337853-16337977 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.