Cow genome map

Conread name: Spl1-SPL010001B10

Conread position: 3-309
Cow position: chr12:31217703-31217396 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 119, 29

Conread position: 5-159
Cow position: chr12:8673926-8674084 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 27

Conread position: 5-159
Cow position: chr12:40514643-40514484 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 21

Conread position: 5-165
Cow position: chr12:28708100-28708263 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 54, 24

Conread position: 5-190
Cow position: chr12:25260228-25260418 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 5-190
Cow position: chr12:30593584-30593776 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 23

Conread position: 5-190
Cow position: chr12:40867857-40867663 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 50

Conread position: 5-194
Cow position: chr12:14522900-14522704 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 24

Conread position: 5-197
Cow position: chr12:5273841-5274041 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 49

Conread position: 5-198
Cow position: chr12:21202354-21202150 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 39, 50

Conread position: 5-198
Cow position: chr12:27852130-27852328 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 118, 27

Conread position: 5-201
Cow position: chr12:44766356-44766151 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 24

Conread position: 5-203
Cow position: chr12:38774613-38774409 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 41, 24

Conread position: 5-206
Cow position: chr12:5905055-5904846 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 24

Conread position: 5-211
Cow position: chr12:22286410-22286625 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 46, 24

Conread position: 5-222
Cow position: chr12:17969488-17969268 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 29, 13

Conread position: 5-238
Cow position: chr12:21557471-21557229 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 71, 27

Conread position: 5-241
Cow position: chr12:35135819-35135584 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 46, 5

Conread position: 5-247
Cow position: chr12:32088759-32088511 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 118, 24

Conread position: 5-280
Cow position: chr12:43681528-43681244 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 5-282
Cow position: chr12:3716749-3717036 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr12:12754642-12754919 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 118, 27

Conread position: 5-282
Cow position: chr12:18586197-18585910 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 47

Conread position: 5-282
Cow position: chr12:20459198-20459482 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr12:24028959-24029244 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 5-283
Cow position: chr12:12928386-12928674 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 69, 28

Conread position: 5-285
Cow position: chr12:10076182-10075894 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 28

Conread position: 5-285
Cow position: chr12:15821243-15820964 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-285
Cow position: chr12:21057192-21057474 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 51

Conread position: 5-286
Cow position: chr12:25365501-25365784 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 109, 41

Conread position: 5-291
Cow position: chr12:11101772-11101476 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 50

Conread position: 5-291
Cow position: chr12:17663475-17663190 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 159

Conread position: 5-291
Cow position: chr12:28763491-28763785 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 46, 20

Conread position: 5-293
Cow position: chr12:1055985-1056281 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 28

Conread position: 5-293
Cow position: chr12:7885349-7885661 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 112, 24

Conread position: 5-293
Cow position: chr12:8841531-8841832 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 5-293
Cow position: chr12:14568300-14568588 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 28

Conread position: 5-293
Cow position: chr12:21075344-21075062 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 118, 27

Conread position: 5-293
Cow position: chr12:21665662-21665362 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 58

Conread position: 5-293
Cow position: chr12:21718648-21718951 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 50

Conread position: 5-293
Cow position: chr12:22517325-22517626 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 32, 228

Conread position: 5-298
Cow position: chr12:6954837-6954543 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 27

Conread position: 5-302
Cow position: chr12:249797-250103 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 70, 39

Conread position: 5-302
Cow position: chr12:22979369-22979676 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 5-304
Cow position: chr12:1093425-1093116 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 5-304
Cow position: chr12:3180933-3180624 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr12:13042716-13043026 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-304
Cow position: chr12:21212308-21211999 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 54, 28

Conread position: 5-304
Cow position: chr12:21250790-21251099 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr12:21432866-21432556 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 31, 59

Conread position: 5-304
Cow position: chr12:21611121-21610818 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 24

Conread position: 5-304
Cow position: chr12:22202157-22202466 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 50

Conread position: 5-304
Cow position: chr12:22480648-22480340 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 5-304
Cow position: chr12:23137804-23138113 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr12:25148094-25148403 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 5-304
Cow position: chr12:27994625-27994316 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 29

Conread position: 5-304
Cow position: chr12:28012707-28013016 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr12:31328805-31329114 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr12:32011253-32011562 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr12:32147105-32147414 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr12:32657073-32656764 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 54, 28

Conread position: 5-304
Cow position: chr12:41337708-41338017 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr12:42604660-42604967 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 69, 28

Conread position: 5-306
Cow position: chr12:24558096-24557791 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-307
Cow position: chr12:5713485-5713176 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-307
Cow position: chr12:36287487-36287802 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 60

Conread position: 5-310
Cow position: chr12:26869728-26870047 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 5-311
Cow position: chr12:6186624-6186938 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 226
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 38, 50

Conread position: 5-317
Cow position: chr12:12177711-12178034 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 5-321
Cow position: chr12:24447344-24447674 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 40, 64

Conread position: 5-324
Cow position: chr12:37562528-37562201 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 54, 28

Conread position: 6-232
Cow position: chr12:27573614-27573381 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 26

Conread position: 6-233
Cow position: chr12:26367663-26367437 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 26

Conread position: 6-280
Cow position: chr12:10988877-10988597 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 6-291
Cow position: chr12:5226753-5226462 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 23

Conread position: 7-177
Cow position: chr12:20218018-20217838 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 25

Conread position: 8-291
Cow position: chr12:25313192-25313485 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 47

Conread position: 9-308
Cow position: chr12:30141935-30141631 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 45

Conread position: 10-283
Cow position: chr12:15939359-15939629 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 20

Conread position: 29-310
Cow position: chr12:19871713-19871422 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 74, 0

Conread position: 34-292
Cow position: chr12:21946483-21946224 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 154

Conread position: 34-296
Cow position: chr12:3094130-3094400 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 17

Conread position: 36-302
Cow position: chr12:8774157-8773882 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 29, 229

Conread position: 38-213
Cow position: chr12:747487-747309 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 91, 156

Conread position: 39-185
Cow position: chr12:33757803-33757946 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 13, 113

Conread position: 39-293
Cow position: chr12:36568855-36569118 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 167

Conread position: 39-306
Cow position: chr12:6627783-6627523 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 105, 74

Conread position: 41-283
Cow position: chr12:23441453-23441703 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 41-304
Cow position: chr12:21904845-21904574 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 43-323
Cow position: chr12:29447289-29447003 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 24, 36

Conread position: 52-293
Cow position: chr12:31260934-31261183 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 55-233
Cow position: chr12:22450846-22450664 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 66, 133

Conread position: 55-242
Cow position: chr12:45540866-45540672 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 68, 0

Conread position: 55-265
Cow position: chr12:19972214-19972004 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 79

Conread position: 57-308
Cow position: chr12:26823588-26823334 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 82

Conread position: 58-307
Cow position: chr12:19198503-19198248 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 186

Conread position: 66-293
Cow position: chr12:19495918-19496148 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 141
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 11, 158

Conread position: 67-322
Cow position: chr12:21484862-21484608 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 56, 165

Conread position: 72-241
Cow position: chr12:19862142-19861979 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 80

Conread position: 164-293
Cow position: chr12:40306655-40306525 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 184-310
Cow position: chr12:19868551-19868423 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 0

Show alignments to all cow chromosomes.