Cow genome map

Conread name: Spl1-SPL010001B10

Conread position: 5-157
Cow position: chr19:42297866-42298022 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 24

Conread position: 5-159
Cow position: chr19:12551465-12551622 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 50

Conread position: 5-159
Cow position: chr19:29365160-29365009 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 116, 24

Conread position: 5-159
Cow position: chr19:30518364-30518207 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 50

Conread position: 5-159
Cow position: chr19:32456940-32456787 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 28

Conread position: 5-176
Cow position: chr19:29071407-29071583 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 24

Conread position: 5-180
Cow position: chr19:23383070-23382886 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 28

Conread position: 5-204
Cow position: chr19:736117-736320 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 24

Conread position: 5-220
Cow position: chr19:15766409-15766176 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 110, 27

Conread position: 5-230
Cow position: chr19:14580913-14580676 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 0

Conread position: 5-233
Cow position: chr19:20433610-20433844 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 32, 0

Conread position: 5-236
Cow position: chr19:19501060-19501300 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 186
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 46, 24

Conread position: 5-238
Cow position: chr19:42647752-42647981 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 50, 24

Conread position: 5-238
Cow position: chr19:47188458-47188694 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 46, 24

Conread position: 5-241
Cow position: chr19:28794700-28794945 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 39, 50

Conread position: 5-241
Cow position: chr19:50833276-50833516 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 27

Conread position: 5-242
Cow position: chr19:36419733-36419493 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 24

Conread position: 5-242
Cow position: chr19:44216219-44216464 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 26, 50

Conread position: 5-242
Cow position: chr19:48218745-48218986 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 117, 6

Conread position: 5-247
Cow position: chr19:12776872-12776635 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 50

Conread position: 5-247
Cow position: chr19:15797051-15796803 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 39

Conread position: 5-275
Cow position: chr19:30473514-30473787 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 5-282
Cow position: chr19:7491715-7491439 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-282
Cow position: chr19:14158039-14157752 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr19:28575771-28576054 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr19:30237338-30237054 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 5-282
Cow position: chr19:34905694-34905983 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-284
Cow position: chr19:2588815-2588529 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 5-284
Cow position: chr19:25085818-25085547 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 31

Conread position: 5-285
Cow position: chr19:164487-164793 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 39, 282

Conread position: 5-285
Cow position: chr19:33625199-33624913 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 41, 27

Conread position: 5-285
Cow position: chr19:40015962-40016247 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 38, 49

Conread position: 5-287
Cow position: chr19:7472678-7472399 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 73

Conread position: 5-291
Cow position: chr19:930450-930154 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 54, 33

Conread position: 5-291
Cow position: chr19:40848858-40849154 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 0

Conread position: 5-293
Cow position: chr19:777147-776846 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 110

Conread position: 5-293
Cow position: chr19:20403910-20403617 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-293
Cow position: chr19:20611965-20611667 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-293
Cow position: chr19:24734768-24734476 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 69, 28

Conread position: 5-293
Cow position: chr19:32952446-32952154 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 23

Conread position: 5-294
Cow position: chr19:31782201-31781901 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 5-303
Cow position: chr19:39697108-39696807 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 33

Conread position: 5-304
Cow position: chr19:6732-6426 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 24

Conread position: 5-304
Cow position: chr19:41965-41655 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr19:208126-207822 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 116

Conread position: 5-304
Cow position: chr19:435705-436016 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 50

Conread position: 5-304
Cow position: chr19:3086423-3086115 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 39, 196

Conread position: 5-304
Cow position: chr19:12209299-12209611 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-304
Cow position: chr19:23488387-23488081 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 118

Conread position: 5-304
Cow position: chr19:29367159-29366850 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr19:29624667-29624358 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr19:33877047-33876738 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 5-304
Cow position: chr19:36351899-36351591 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr19:39181903-39182218 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr19:39394832-39394523 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 31

Conread position: 5-304
Cow position: chr19:40790727-40791034 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr19:44839560-44839847 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-305
Cow position: chr19:4389205-4388904 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 61, 40

Conread position: 5-305
Cow position: chr19:34985713-34985408 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 8, 25

Conread position: 5-305
Cow position: chr19:48534352-48534051 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 156, 27

Conread position: 5-306
Cow position: chr19:33945197-33944886 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-307
Cow position: chr19:2269670-2269982 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-307
Cow position: chr19:27081784-27082095 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 24

Conread position: 5-307
Cow position: chr19:27612860-27613184 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 24

Conread position: 5-309
Cow position: chr19:12652506-12652192 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 39

Conread position: 5-310
Cow position: chr19:17883569-17883281 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 27

Conread position: 5-313
Cow position: chr19:743084-743394 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 54, 24

Conread position: 5-319
Cow position: chr19:50561694-50561370 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 24

Conread position: 5-332
Cow position: chr19:36189329-36188990 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 61, 24

Conread position: 6-176
Cow position: chr19:15068689-15068861 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 116, 32

Conread position: 6-278
Cow position: chr19:14180371-14180652 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 23

Conread position: 6-304
Cow position: chr19:5902658-5902349 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 27

Conread position: 6-304
Cow position: chr19:28597002-28596698 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 53, 32

Conread position: 6-304
Cow position: chr19:37844146-37844458 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 247

Conread position: 7-291
Cow position: chr19:255495-255790 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 61, 22

Conread position: 7-292
Cow position: chr19:46821481-46821187 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 22

Conread position: 9-170
Cow position: chr19:7054028-7054185 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 23

Conread position: 9-195
Cow position: chr19:15842848-15843044 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 23

Conread position: 11-242
Cow position: chr19:34653517-34653746 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 39

Conread position: 18-293
Cow position: chr19:1663683-1663405 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 27

Conread position: 18-293
Cow position: chr19:20671981-20672262 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 11

Conread position: 23-282
Cow position: chr19:38894327-38894063 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 23

Conread position: 29-293
Cow position: chr19:52465681-52465946 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 22, 135

Conread position: 32-242
Cow position: chr19:197615-197401 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 90, 15

Conread position: 34-291
Cow position: chr19:1152251-1151995 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 20

Conread position: 34-291
Cow position: chr19:1293951-1293685 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 233

Conread position: 38-238
Cow position: chr19:39750756-39750564 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 67

Conread position: 39-307
Cow position: chr19:35381479-35381755 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 184

Conread position: 40-182
Cow position: chr19:47670699-47670549 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 41-211
Cow position: chr19:19805273-19805454 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 42-240
Cow position: chr19:39077029-39076833 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 81, 10

Conread position: 43-331
Cow position: chr19:27347477-27347759 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 145

Conread position: 47-202
Cow position: chr19:42725597-42725444 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 8

Conread position: 47-307
Cow position: chr19:2019182-2019444 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 28, 5

Conread position: 47-311
Cow position: chr19:4599596-4599332 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 74, 5

Conread position: 47-318
Cow position: chr19:19173245-19172961 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 40

Conread position: 51-232
Cow position: chr19:39602902-39603091 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 71, 0

Conread position: 52-289
Cow position: chr19:29628108-29628356 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 69, 149

Conread position: 52-307
Cow position: chr19:42867047-42866784 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 57-310
Cow position: chr19:14156531-14156784 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 49

Conread position: 59-286
Cow position: chr19:7065252-7065018 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 7

Conread position: 66-292
Cow position: chr19:15720319-15720539 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 57, 162

Conread position: 90-309
Cow position: chr19:444394-444618 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 168

Conread position: 172-293
Cow position: chr19:9543207-9543328 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 93

Show alignments to all cow chromosomes.