Cow genome map

Conread name: Spl1-SPL010001B10

Conread position: 2-286
Cow position: chr23:2472775-2473069 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 57, 9

Conread position: 5-158
Cow position: chr23:5539612-5539767 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 24

Conread position: 5-159
Cow position: chr23:2721246-2721089 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 50

Conread position: 5-160
Cow position: chr23:26840699-26840535 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 5-164
Cow position: chr23:25665293-25665445 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 118, 24

Conread position: 5-166
Cow position: chr23:362118-362282 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 24

Conread position: 5-190
Cow position: chr23:14738424-14738229 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 24

Conread position: 5-215
Cow position: chr23:25370373-25370587 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 46, 24

Conread position: 5-215
Cow position: chr23:25411977-25412195 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 24

Conread position: 5-229
Cow position: chr23:6223340-6223113 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 39, 23

Conread position: 5-229
Cow position: chr23:36688488-36688718 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 27

Conread position: 5-231
Cow position: chr23:35937338-35937110 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 118, 28

Conread position: 5-232
Cow position: chr23:29471787-29472021 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 25

Conread position: 5-235
Cow position: chr23:26230650-26230415 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 111, 33

Conread position: 5-241
Cow position: chr23:1113476-1113231 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 69, 28

Conread position: 5-241
Cow position: chr23:28306369-28306122 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 188

Conread position: 5-242
Cow position: chr23:38934710-38934946 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 69, 28

Conread position: 5-247
Cow position: chr23:38560688-38560938 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 40, 27

Conread position: 5-247
Cow position: chr23:39389593-39389341 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 50

Conread position: 5-281
Cow position: chr23:2023564-2023846 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 33

Conread position: 5-281
Cow position: chr23:12978269-12977996 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 18

Conread position: 5-282
Cow position: chr23:5624054-5624335 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 40

Conread position: 5-282
Cow position: chr23:30622976-30623263 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 33

Conread position: 5-285
Cow position: chr23:4517054-4516771 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 57, 24

Conread position: 5-285
Cow position: chr23:40773852-40773562 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 23

Conread position: 5-286
Cow position: chr23:29447734-29448017 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 50, 24

Conread position: 5-291
Cow position: chr23:4437143-4436847 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 25

Conread position: 5-291
Cow position: chr23:15529111-15528815 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-291
Cow position: chr23:22143786-22144082 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 50

Conread position: 5-291
Cow position: chr23:24098652-24098356 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-291
Cow position: chr23:25554118-25553820 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 46, 24

Conread position: 5-291
Cow position: chr23:30634073-30634366 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 39

Conread position: 5-291
Cow position: chr23:37198986-37199282 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-293
Cow position: chr23:1321872-1322168 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 5-293
Cow position: chr23:3286283-3285985 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 39, 193

Conread position: 5-293
Cow position: chr23:5441441-5441144 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 33

Conread position: 5-293
Cow position: chr23:6173499-6173792 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 40

Conread position: 5-293
Cow position: chr23:11070604-11070303 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 0

Conread position: 5-293
Cow position: chr23:17404134-17403840 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-293
Cow position: chr23:31704419-31704121 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 50

Conread position: 5-302
Cow position: chr23:31771746-31772051 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 54, 28

Conread position: 5-303
Cow position: chr23:16999960-16999656 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 118, 24

Conread position: 5-304
Cow position: chr23:1959651-1959342 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr23:3709923-3709619 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr23:8707915-8707606 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 5-304
Cow position: chr23:11128540-11128235 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 23

Conread position: 5-304
Cow position: chr23:11344017-11343712 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 39

Conread position: 5-304
Cow position: chr23:11376793-11377102 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 5-304
Cow position: chr23:11782310-11782001 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr23:15180480-15180174 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 13

Conread position: 5-304
Cow position: chr23:16495752-16496060 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 228

Conread position: 5-304
Cow position: chr23:19493371-19493064 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 46

Conread position: 5-304
Cow position: chr23:24120079-24119770 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 69, 24

Conread position: 5-304
Cow position: chr23:28915852-28915548 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 191

Conread position: 5-304
Cow position: chr23:28987867-28987558 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 28

Conread position: 5-304
Cow position: chr23:29043308-29042998 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 32, 0

Conread position: 5-304
Cow position: chr23:36027728-36028037 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-305
Cow position: chr23:14970430-14970737 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 26, 50

Conread position: 5-305
Cow position: chr23:17846513-17846212 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 28, 10

Conread position: 5-305
Cow position: chr23:22170431-22170122 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 5-305
Cow position: chr23:27313369-27313059 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 5-306
Cow position: chr23:8290978-8290675 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 202

Conread position: 5-306
Cow position: chr23:23192912-23193214 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 39, 102

Conread position: 5-307
Cow position: chr23:2320426-2320735 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 32, 0

Conread position: 5-307
Cow position: chr23:11078803-11078493 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 24

Conread position: 5-307
Cow position: chr23:16057214-16056912 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 23

Conread position: 5-309
Cow position: chr23:2761422-2761109 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 54, 39

Conread position: 5-309
Cow position: chr23:14265864-14265557 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 24

Conread position: 5-309
Cow position: chr23:14959433-14959741 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-309
Cow position: chr23:25357871-25357556 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 5-310
Cow position: chr23:20152696-20153011 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 50

Conread position: 5-314
Cow position: chr23:954276-954594 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 28

Conread position: 5-315
Cow position: chr23:38584438-38584121 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 118, 27

Conread position: 5-316
Cow position: chr23:29446426-29446743 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 5-318
Cow position: chr23:7359980-7359659 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-318
Cow position: chr23:25670254-25670579 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 24

Conread position: 6-176
Cow position: chr23:10013858-10013678 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 23

Conread position: 6-242
Cow position: chr23:14839667-14839910 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 22

Conread position: 6-304
Cow position: chr23:4892219-4891911 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 38, 49

Conread position: 6-304
Cow position: chr23:26828772-26828468 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 38, 219

Conread position: 7-221
Cow position: chr23:2791252-2791475 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 37, 7

Conread position: 7-282
Cow position: chr23:15215328-15215600 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 116, 38

Conread position: 9-304
Cow position: chr23:14215714-14216011 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 24

Conread position: 11-313
Cow position: chr23:19637389-19637690 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 33, 18

Conread position: 13-316
Cow position: chr23:40825315-40825001 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 42

Conread position: 18-304
Cow position: chr23:770986-771276 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 102, 7

Conread position: 29-300
Cow position: chr23:12864196-12863920 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 94, 23

Conread position: 31-291
Cow position: chr23:40553625-40553894 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 23

Conread position: 36-293
Cow position: chr23:31833514-31833773 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 16

Conread position: 37-288
Cow position: chr23:34347367-34347105 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 65, 140

Conread position: 39-308
Cow position: chr23:344977-345243 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 159

Conread position: 40-293
Cow position: chr23:30243978-30243728 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 129

Conread position: 40-306
Cow position: chr23:6593449-6593712 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 41

Conread position: 40-325
Cow position: chr23:2370506-2370218 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 22

Conread position: 41-286
Cow position: chr23:20541453-20541209 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 11

Conread position: 42-293
Cow position: chr23:29625462-29625200 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 10

Conread position: 52-336
Cow position: chr23:10424401-10424119 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 71, 198

Conread position: 55-293
Cow position: chr23:29459782-29460023 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 21

Conread position: 66-202
Cow position: chr23:35929397-35929251 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 68-302
Cow position: chr23:20389562-20389804 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 58, 130

Conread position: 75-302
Cow position: chr23:1325863-1326097 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 214

Show alignments to all cow chromosomes.