Cow genome map

Conread name: Spl1-SPL010001B10

Conread position: 3-286
Cow position: chr25:15368057-15367761 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 218

Conread position: 5-143
Cow position: chr25:37446915-37446780 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 118, 24

Conread position: 5-145
Cow position: chr25:11896180-11896323 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 24

Conread position: 5-159
Cow position: chr25:18324043-18324200 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 39, 50

Conread position: 5-159
Cow position: chr25:29216813-29216972 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 25

Conread position: 5-163
Cow position: chr25:24776666-24776508 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 118, 24

Conread position: 5-175
Cow position: chr25:35625907-35626077 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 60, 24

Conread position: 5-178
Cow position: chr25:9595630-9595454 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 50

Conread position: 5-179
Cow position: chr25:36127593-36127775 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 28

Conread position: 5-184
Cow position: chr25:14790547-14790358 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 54, 27

Conread position: 5-188
Cow position: chr25:35613023-35613214 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 24

Conread position: 5-201
Cow position: chr25:16430704-16430909 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 50

Conread position: 5-202
Cow position: chr25:18129515-18129315 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 25

Conread position: 5-214
Cow position: chr25:34767994-34767787 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 54, 27

Conread position: 5-229
Cow position: chr25:10137127-10136894 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 5-238
Cow position: chr25:14954723-14954959 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 50

Conread position: 5-242
Cow position: chr25:4858184-4858431 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 49, 28

Conread position: 5-242
Cow position: chr25:41366839-41367080 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 115, 24

Conread position: 5-247
Cow position: chr25:25510203-25509951 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 50

Conread position: 5-250
Cow position: chr25:20613847-20613601 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 41, 24

Conread position: 5-259
Cow position: chr25:23913981-23913720 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-262
Cow position: chr25:7800330-7800063 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 53, 24

Conread position: 5-267
Cow position: chr25:24654855-24655132 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 5-278
Cow position: chr25:35754931-35755212 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr25:13960373-13960094 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 24

Conread position: 5-282
Cow position: chr25:28275354-28275641 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr25:35567576-35567857 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 118, 39

Conread position: 5-285
Cow position: chr25:10012745-10013039 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 5-285
Cow position: chr25:17585708-17585998 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 0

Conread position: 5-285
Cow position: chr25:18474512-18474229 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 49, 24

Conread position: 5-285
Cow position: chr25:24228031-24228313 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 24

Conread position: 5-285
Cow position: chr25:34673273-34673562 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 46, 24

Conread position: 5-285
Cow position: chr25:41356487-41356775 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 118, 24

Conread position: 5-286
Cow position: chr25:8655605-8655315 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 23

Conread position: 5-286
Cow position: chr25:17657926-17657643 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 118, 24

Conread position: 5-286
Cow position: chr25:22576513-22576785 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 118, 24

Conread position: 5-286
Cow position: chr25:36512588-36512308 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 185
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 27

Conread position: 5-286
Cow position: chr25:41097884-41098168 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 54, 24

Conread position: 5-288
Cow position: chr25:11043929-11043640 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 54, 24

Conread position: 5-291
Cow position: chr25:11956140-11955849 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 24

Conread position: 5-291
Cow position: chr25:16922478-16922771 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 5-291
Cow position: chr25:18490388-18490084 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 39, 24

Conread position: 5-291
Cow position: chr25:25826767-25826466 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 16, 214

Conread position: 5-291
Cow position: chr25:29802431-29802727 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 0

Conread position: 5-291
Cow position: chr25:34343594-34343889 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 29

Conread position: 5-291
Cow position: chr25:37593716-37593423 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 39, 24

Conread position: 5-292
Cow position: chr25:9054973-9054686 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 24

Conread position: 5-292
Cow position: chr25:40389423-40389717 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 5-293
Cow position: chr25:4522501-4522795 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 24

Conread position: 5-293
Cow position: chr25:9395725-9395426 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 108

Conread position: 5-293
Cow position: chr25:19367385-19367679 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 5-293
Cow position: chr25:32610106-32610404 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-293
Cow position: chr25:35589391-35589094 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 39, 234

Conread position: 5-300
Cow position: chr25:26780772-26781077 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 5-301
Cow position: chr25:13429802-13430104 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 118, 24

Conread position: 5-301
Cow position: chr25:18486773-18486470 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-302
Cow position: chr25:23366981-23366669 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-304
Cow position: chr25:12938893-12939202 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 29

Conread position: 5-304
Cow position: chr25:13787278-13786979 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 118, 40

Conread position: 5-304
Cow position: chr25:14756101-14756404 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 99

Conread position: 5-304
Cow position: chr25:17992834-17993136 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-304
Cow position: chr25:18269788-18269478 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 63, 24

Conread position: 5-304
Cow position: chr25:18886170-18886476 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 5-304
Cow position: chr25:19337013-19337320 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-304
Cow position: chr25:19923835-19923532 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 257

Conread position: 5-304
Cow position: chr25:22151419-22151110 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr25:23394176-23393878 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 21

Conread position: 5-304
Cow position: chr25:26282338-26282030 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr25:26353471-26353779 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 70, 24

Conread position: 5-304
Cow position: chr25:27231664-27231364 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 10, 19

Conread position: 5-304
Cow position: chr25:28863186-28862877 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr25:34164248-34164556 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-304
Cow position: chr25:34508868-34509174 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 5-304
Cow position: chr25:40321976-40322285 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 5-304
Cow position: chr25:41135437-41135740 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 54, 24

Conread position: 5-305
Cow position: chr25:3172104-3172395 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 10, 107

Conread position: 5-309
Cow position: chr25:23325715-23326026 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 51, 28

Conread position: 5-312
Cow position: chr25:41121315-41121001 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 39

Conread position: 5-335
Cow position: chr25:18190065-18190402 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 28

Conread position: 6-335
Cow position: chr25:39386519-39386857 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 28

Conread position: 9-228
Cow position: chr25:21120620-21120391 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 5, 25

Conread position: 18-291
Cow position: chr25:20495841-20495574 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 105, 37

Conread position: 18-298
Cow position: chr25:33574437-33574722 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 11, 230

Conread position: 32-283
Cow position: chr25:23361771-23361513 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 28, 235

Conread position: 36-285
Cow position: chr25:17562323-17562067 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 178

Conread position: 38-183
Cow position: chr25:20006429-20006276 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 38-309
Cow position: chr25:2516279-2516008 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 188

Conread position: 39-229
Cow position: chr25:13332684-13332497 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 95

Conread position: 40-304
Cow position: chr25:34502941-34503217 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 40-331
Cow position: chr25:37648700-37648408 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 19, 95

Conread position: 42-242
Cow position: chr25:23772986-23773182 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 45-230
Cow position: chr25:24459451-24459634 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 16

Conread position: 52-287
Cow position: chr25:24636878-24637118 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 107

Conread position: 52-304
Cow position: chr25:29357747-29358007 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 67-301
Cow position: chr25:18180613-18180370 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 213

Conread position: 89-304
Cow position: chr25:20633988-20633766 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 34, 118

Conread position: 194-293
Cow position: chr25:9957944-9958040 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 16

Show alignments to all cow chromosomes.