Cow genome map

Conread name: Spl1-SPL010001B10

Conread position: 2-159
Cow position: chr27:9989351-9989511 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 42, 53

Conread position: 2-322
Cow position: chr27:1502042-1501712 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 47

Conread position: 5-139
Cow position: chr27:12190799-12190661 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 46, 24

Conread position: 5-145
Cow position: chr27:8187357-8187218 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 118, 28

Conread position: 5-146
Cow position: chr27:30176988-30177133 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 32, 24

Conread position: 5-159
Cow position: chr27:13844188-13844345 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 24

Conread position: 5-170
Cow position: chr27:23454500-23454331 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 117, 24

Conread position: 5-208
Cow position: chr27:13409520-13409307 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 24

Conread position: 5-215
Cow position: chr27:10324405-10324620 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 54, 29

Conread position: 5-221
Cow position: chr27:26856565-26856338 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 39, 47

Conread position: 5-228
Cow position: chr27:21283722-21283958 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 54, 23

Conread position: 5-228
Cow position: chr27:29811829-29811596 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 39, 50

Conread position: 5-235
Cow position: chr27:816238-816476 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 24

Conread position: 5-238
Cow position: chr27:28984290-28984051 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 39, 126

Conread position: 5-241
Cow position: chr27:15033366-15033611 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-242
Cow position: chr27:20810941-20810695 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 39, 0

Conread position: 5-243
Cow position: chr27:18954567-18954319 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 54, 24

Conread position: 5-247
Cow position: chr27:27291918-27291666 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 40, 0

Conread position: 5-250
Cow position: chr27:4834665-4834416 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 118, 33

Conread position: 5-265
Cow position: chr27:18559410-18559676 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 19, 13

Conread position: 5-279
Cow position: chr27:11490146-11489862 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-282
Cow position: chr27:8201461-8201173 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 60, 40

Conread position: 5-282
Cow position: chr27:11481456-11481169 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-282
Cow position: chr27:13901648-13901362 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 31, 22

Conread position: 5-282
Cow position: chr27:19523185-19523470 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 71, 39

Conread position: 5-282
Cow position: chr27:26330457-26330170 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 38, 50

Conread position: 5-285
Cow position: chr27:24055207-24054941 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 50, 24

Conread position: 5-286
Cow position: chr27:15100164-15099876 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 17

Conread position: 5-291
Cow position: chr27:27557323-27557031 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 24

Conread position: 5-293
Cow position: chr27:4805305-4805015 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 117, 24

Conread position: 5-293
Cow position: chr27:8592903-8592608 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 25

Conread position: 5-293
Cow position: chr27:10579468-10579174 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 39, 101

Conread position: 5-293
Cow position: chr27:12277633-12277337 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 88

Conread position: 5-293
Cow position: chr27:25784239-25784527 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 24

Conread position: 5-293
Cow position: chr27:26644730-26645028 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 101, 24

Conread position: 5-293
Cow position: chr27:30306741-30307042 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 5-297
Cow position: chr27:10383955-10383664 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 49

Conread position: 5-298
Cow position: chr27:19388665-19388971 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 46, 24

Conread position: 5-300
Cow position: chr27:2682047-2681740 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 5-300
Cow position: chr27:9090167-9089865 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 5-300
Cow position: chr27:13182765-13183056 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 24

Conread position: 5-300
Cow position: chr27:26785340-26785038 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 5-304
Cow position: chr27:165395-165703 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 5-304
Cow position: chr27:3232013-3232318 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 118, 27

Conread position: 5-304
Cow position: chr27:3653175-3653484 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 5-304
Cow position: chr27:3990276-3990584 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 49

Conread position: 5-304
Cow position: chr27:4331214-4331524 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 50

Conread position: 5-304
Cow position: chr27:10306631-10306334 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 142, 18

Conread position: 5-304
Cow position: chr27:11256162-11256466 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 23

Conread position: 5-304
Cow position: chr27:13353831-13353522 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 5-304
Cow position: chr27:15633818-15634126 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr27:21350372-21350064 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 24

Conread position: 5-304
Cow position: chr27:24295735-24296053 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 39, 50

Conread position: 5-304
Cow position: chr27:27930727-27930424 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 27, 198

Conread position: 5-305
Cow position: chr27:8972970-8972660 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 290

Conread position: 5-307
Cow position: chr27:2557469-2557776 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 60, 27

Conread position: 5-310
Cow position: chr27:8427383-8427068 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 34, 24

Conread position: 6-192
Cow position: chr27:28907709-28907900 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 26

Conread position: 8-285
Cow position: chr27:21451968-21451677 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 24

Conread position: 9-291
Cow position: chr27:25799774-25799486 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 114, 20

Conread position: 9-300
Cow position: chr27:13317076-13316779 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 20

Conread position: 11-292
Cow position: chr27:6523761-6524051 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 18

Conread position: 15-285
Cow position: chr27:1536685-1536403 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 14

Conread position: 18-302
Cow position: chr27:15406135-15405843 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 205

Conread position: 29-304
Cow position: chr27:30036367-30036085 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 7

Conread position: 36-300
Cow position: chr27:14669683-14669410 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 17

Conread position: 40-304
Cow position: chr27:5914415-5914149 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 107, 26

Conread position: 40-304
Cow position: chr27:19423886-19424161 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 36, 23

Conread position: 40-306
Cow position: chr27:1189154-1188882 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 192

Conread position: 41-303
Cow position: chr27:20765223-20764965 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 120, 21

Conread position: 41-306
Cow position: chr27:21392498-21392225 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 155

Conread position: 42-300
Cow position: chr27:16331994-16332258 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 10

Conread position: 42-306
Cow position: chr27:30783388-30783117 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 10

Conread position: 46-307
Cow position: chr27:24239649-24239901 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 77, 6

Conread position: 47-225
Cow position: chr27:2936302-2936121 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 72

Conread position: 47-286
Cow position: chr27:9262797-9263044 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 74, 5

Conread position: 47-291
Cow position: chr27:4982852-4982601 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 76, 5

Conread position: 49-286
Cow position: chr27:17565163-17565400 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 74, 26

Conread position: 50-293
Cow position: chr27:4818891-4818642 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 11, 91

Conread position: 66-316
Cow position: chr27:16787836-16788094 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 57, 0

Conread position: 80-307
Cow position: chr27:15375250-15375027 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 11

Conread position: 122-307
Cow position: chr27:25971195-25971388 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 38, 86

Show alignments to all cow chromosomes.