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Cow genome map

           
Conread name:
           
Spl1-SPL010001B10
        

               
Conread position:
               
2-293
               

               
Cow position:
               
chr9:1838382-1838086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
5-159
               

               
Cow position:
               
chr9:9415626-9415473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-159
               

               
Cow position:
               
chr9:52753792-52753949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
5-169
               

               
Cow position:
               
chr9:9752174-9752005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
5-169
               

               
Cow position:
               
chr9:37068280-37068120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chr9:59507788-59507952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-174
               

               
Cow position:
               
chr9:18381575-18381747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr9:26478274-26478442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr9:12195028-12195211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-180
               

               
Cow position:
               
chr9:7844260-7844444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chr9:56528646-56528460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
5-187
               

               
Cow position:
               
chr9:28726028-28725837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr9:38346729-38346917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr9:10634344-10634143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr9:3311718-3311519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr9:20959228-20959013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr9:9442879-9442659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr9:58133167-58133396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr9:30139184-30139412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr9:59454468-59454696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr9:23043851-23044082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr9:3756410-3756642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr9:49073634-49073866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-229
               

               
Cow position:
               
chr9:16981640-16981873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr9:22361731-22361956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr9:20578188-20577956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr9:27898456-27898220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr9:10803101-10802864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr9:64054868-64054637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr9:8727766-8727535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr9:26055459-26055220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr9:8387249-8387008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr9:51556394-51556155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr9:2201019-2200778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr9:20409792-20409555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr9:38634208-38633967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr9:20317853-20317607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr9:27050578-27050330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr9:10326662-10326417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr9:11477831-11478074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 188
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr9:18205488-18205259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr9:22656227-22655982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-242
               

               
Cow position:
               
chr9:43538216-43538461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:5414622-5414875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:6252993-6252740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:10857461-10857210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:16179013-16178761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:28657628-28657880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:30737080-30737339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:47006162-47005910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr9:59479428-59479680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr9:33659195-33659446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr9:20900399-20900121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr9:5007394-5007117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr9:9491520-9491798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:6764340-6764630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:12285279-12285566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:18506400-18506682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 40
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:24917859-24918146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:34059204-34059491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr9:42868443-42868731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr9:14046094-14045813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 24
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr9:50900219-50900495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr9:55621206-55621479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr9:790884-791172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr9:13181338-13181056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr9:34945593-34945875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr9:3062016-3061724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr9:6365802-6365515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 47
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chr9:33999662-33999374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:174346-174640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:2618356-2618664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:3388399-3388691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:4284650-4284357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:15982131-15981836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:29106304-29106008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:30401706-30401415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:47882860-47883150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:59539330-59539042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr9:62669124-62669419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
5-292
               

               
Cow position:
               
chr9:23005163-23005436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
5-292
               

               
Cow position:
               
chr9:58615264-58615564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:1938615-1938904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:9516094-9515802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:18071909-18071613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:18710921-18710624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:23028600-23028899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:26087580-26087871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:29338334-29338037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:46667369-46667667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:51692197-51692489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr9:55796665-55796975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr9:4553222-4552927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr9:60460087-60460388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr9:12378874-12378573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
5-302
               

               
Cow position:
               
chr9:29300602-29300891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chr9:59540855-59540564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:199398-199693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:217685-217996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:1991125-1991432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:2495312-2495621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:2834572-2834880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:3807023-3806714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:3997344-3997640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:4940070-4940379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:5327937-5328235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:5628247-5627939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:7006169-7005861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:9016501-9016194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:10566932-10567244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:13493163-13492875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:17302551-17302858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:22570533-22570225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 280
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:22803223-22803531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:27038542-27038227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:27781483-27781792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:32972795-32972487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:33843752-33843443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:37158183-37158490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:40142928-40143231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:40316563-40316256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr9:53777120-53776813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr9:2873904-2873593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr9:3932681-3932994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr9:7058622-7058931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr9:28025249-28024938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr9:5517605-5517300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr9:19079292-19078982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr9:31811006-31810694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr9:47171482-47171170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr9:1850231-1850528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr9:24996780-24996489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr9:5839721-5840033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr9:17060929-17061242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr9:28702879-28702556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr9:20988722-20988400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr9:34568071-34567746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 192
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr9:33068065-33068402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
5-335
               

               
Cow position:
               
chr9:9623359-9623024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr9:42570644-42570300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr9:1983787-1983454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
5-340
               

               
Cow position:
               
chr9:3411470-3411808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr9:43302175-43302569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr9:9634086-9633846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr9:28822023-28822271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
6-292
               

               
Cow position:
               
chr9:34688890-34688617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
6-293
               

               
Cow position:
               
chr9:12162024-12161726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
6-293
               

               
Cow position:
               
chr9:46670348-46670062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr9:56861753-56862045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 138
               

               
Conread position:
               
7-202
               

               
Cow position:
               
chr9:31078343-31078135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr9:49981923-49981622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
7-340
               

               
Cow position:
               
chr9:2173960-2173624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr9:6887004-6886801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chr9:17307231-17306995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr9:18008025-18007739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr9:23422015-23421701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr9:47263462-47263154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
9-304
               

               
Cow position:
               
chr9:54413185-54413489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
11-291
               

               
Cow position:
               
chr9:51178245-51178536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
11-307
               

               
Cow position:
               
chr9:26124135-26123831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
14-282
               

               
Cow position:
               
chr9:3546236-3545969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
16-304
               

               
Cow position:
               
chr9:10671929-10672216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr9:2214556-2214238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
18-307
               

               
Cow position:
               
chr9:10678516-10678812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
20-175
               

               
Cow position:
               
chr9:9985350-9985509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
29-236
               

               
Cow position:
               
chr9:1856441-1856659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 208
               

               
Conread position:
               
29-304
               

               
Cow position:
               
chr9:33057186-33056902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
33-286
               

               
Cow position:
               
chr9:62400920-62401183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
36-293
               

               
Cow position:
               
chr9:29826095-29826348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
38-300
               

               
Cow position:
               
chr9:13220931-13220660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
39-232
               

               
Cow position:
               
chr9:61845900-61845698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr9:52001718-52001969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
39-307
               

               
Cow position:
               
chr9:4305688-4305955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
12, 151
               

               
Conread position:
               
39-307
               

               
Cow position:
               
chr9:17870898-17870611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
39-307
               

               
Cow position:
               
chr9:54997266-54996990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 175
               

               
Conread position:
               
40-307
               

               
Cow position:
               
chr9:1259832-1259550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 223
               

               
Conread position:
               
40-307
               

               
Cow position:
               
chr9:1640648-1640372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
42-307
               

               
Cow position:
               
chr9:44168980-44168706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
42-332
               

               
Cow position:
               
chr9:21841195-21841471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
43-302
               

               
Cow position:
               
chr9:52407934-52408208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
47-325
               

               
Cow position:
               
chr9:25974606-25974885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 7
               

               
Conread position:
               
50-309
               

               
Cow position:
               
chr9:5533557-5533817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
52-227
               

               
Cow position:
               
chr9:8951669-8951852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
52-243
               

               
Cow position:
               
chr9:44518320-44518515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
52-244
               

               
Cow position:
               
chr9:50727840-50728039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
70, 151
               

               
Conread position:
               
52-263
               

               
Cow position:
               
chr9:50776078-50775861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 152
               

               
Conread position:
               
55-190
               

               
Cow position:
               
chr9:9357520-9357378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
59-213
               

               
Cow position:
               
chr9:17987390-17987551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
59-288
               

               
Cow position:
               
chr9:51160215-51159980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 140
               

               
Conread position:
               
64-304
               

               
Cow position:
               
chr9:44821252-44821005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 169
               

               
Conread position:
               
66-198
               

               
Cow position:
               
chr9:28356059-28356197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
66-242
               

               
Cow position:
               
chr9:33478257-33478074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
122-311
               

               
Cow position:
               
chr9:388715-388518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
123-293
               

               
Cow position:
               
chr9:43856231-43856407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
164-293
               

               
Cow position:
               
chr9:9415209-9415087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
164-304
               

               
Cow position:
               
chr9:17588398-17588258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
179-293
               

               
Cow position:
               
chr9:44920481-44920366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
189-293
               

               
Cow position:
               
chr9:59507944-59508048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 11
               
Show alignments to all cow chromosomes.