Cow genome map
Conread name: | Spl1-SPL010023D07 |
Conread position: | 1-307 |
Cow position: | chr1:16581409-16581126 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 214 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 300, 60 |
Conread position: | 1-307 |
Cow position: | chr1:16586985-16586702 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 214 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 300, 60 |
Conread position: | 1-317 |
Cow position: | chr1:89495130-89494801 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 229 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 33, 64 |
Conread position: | 3-312 |
Cow position: | chr1:44972407-44972714 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 112 |
Conread position: | 7-303 |
Cow position: | chr1:57972614-57972324 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 136 |
Conread position: | 9-297 |
Cow position: | chr1:29225533-29225817 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 184 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 28, 22 |
Conread position: | 11-316 |
Cow position: | chr1:13581882-13581583 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 223 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 155, 81 |
Conread position: | 16-638 |
Cow position: | chr1:77115614-77114967 (view UCSC Genome Browser custom track) |
Alignm length: | 663 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 150 |
Conread position: | 213-787 |
Cow position: | chr1:46836879-46837465 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 61 |
Conread position: | 292-717 |
Cow position: | chr1:61590871-61590417 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 309 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 15, 30 |
Conread position: | 351-721 |
Cow position: | chr1:67909933-67910326 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 272 |
Alignm E-value: | 8.99634e-43 |
Alignm gaps (pig, cow): | 17, 343 |
Conread position: | 351-787 |
Cow position: | chr1:76620090-76619630 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 354-787 |
Cow position: | chr1:72082155-72082602 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 318 |
Conread position: | 358-680 |
Cow position: | chr1:50248307-50247972 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 240 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 10, 170 |
Conread position: | 358-717 |
Cow position: | chr1:88387622-88387999 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 246 |
Conread position: | 358-787 |
Cow position: | chr1:22906150-22906594 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 13 |
Conread position: | 358-787 |
Cow position: | chr1:29412789-29412354 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 107 |
Conread position: | 358-787 |
Cow position: | chr1:65387710-65388161 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 15 |
Conread position: | 358-787 |
Cow position: | chr1:82922760-82922317 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 15 |
Conread position: | 358-788 |
Cow position: | chr1:48248312-48248753 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 18 |
Conread position: | 358-791 |
Cow position: | chr1:39539561-39539144 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 298 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 5, 19 |
Conread position: | 358-791 |
Cow position: | chr1:77463052-77463490 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 247 |
Conread position: | 362-630 |
Cow position: | chr1:32909223-32909496 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 208 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 63, 166 |
Conread position: | 362-758 |
Cow position: | chr1:24206294-24205904 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 32 |
Conread position: | 363-787 |
Cow position: | chr1:13581592-13581147 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 308 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 6, 211 |
Conread position: | 366-696 |
Cow position: | chr1:22345406-22345751 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 113 |
Conread position: | 366-778 |
Cow position: | chr1:69416880-69416457 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 157 |
Conread position: | 373-583 |
Cow position: | chr1:31359810-31360026 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 151 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 373-646 |
Cow position: | chr1:31417100-31416804 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 216 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 373-666 |
Cow position: | chr1:29039446-29039757 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 373-671 |
Cow position: | chr1:29976164-29975871 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 170 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 134, 42 |
Conread position: | 373-672 |
Cow position: | chr1:89733099-89732792 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 219 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 50, 139 |
Conread position: | 373-734 |
Cow position: | chr1:73197625-73197234 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 280 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 38, 182 |
Conread position: | 373-778 |
Cow position: | chr1:79635580-79635160 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 215 |
Conread position: | 373-778 |
Cow position: | chr1:89769129-89768703 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 321 |
Conread position: | 373-788 |
Cow position: | chr1:41519362-41518948 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 65 |
Conread position: | 373-791 |
Cow position: | chr1:72945153-72945583 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 285 |
Conread position: | 374-536 |
Cow position: | chr1:91446856-91447018 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 121 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 112, 90 |
Conread position: | 374-701 |
Cow position: | chr1:38417543-38417879 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 237 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 46, 223 |
Conread position: | 374-754 |
Cow position: | chr1:87969727-87970120 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 159 |
Conread position: | 374-778 |
Cow position: | chr1:61541704-61542114 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 225 |
Conread position: | 374-787 |
Cow position: | chr1:55320663-55320241 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 26 |
Conread position: | 375-745 |
Cow position: | chr1:56192753-56192361 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 322 |
Conread position: | 375-787 |
Cow position: | chr1:81862572-81862137 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 313 |
Conread position: | 376-624 |
Cow position: | chr1:76095650-76095385 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 202 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 75, 0 |
Conread position: | 376-754 |
Cow position: | chr1:57135830-57136219 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 256 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 44, 152 |
Conread position: | 376-778 |
Cow position: | chr1:24652678-24653103 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 10 |
Conread position: | 376-788 |
Cow position: | chr1:67326522-67326111 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 91 |
Conread position: | 376-788 |
Cow position: | chr1:82367187-82367610 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 223 |
Conread position: | 377-750 |
Cow position: | chr1:72992906-72993295 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 273 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 55, 245 |
Conread position: | 381-620 |
Cow position: | chr1:78923643-78923897 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 186 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 39, 184 |
Conread position: | 381-717 |
Cow position: | chr1:23092067-23092407 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 227 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 41, 69 |
Conread position: | 381-787 |
Cow position: | chr1:31193128-31192725 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 32 |
Conread position: | 386-788 |
Cow position: | chr1:31402027-31401605 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 288 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 32, 171 |
Conread position: | 414-788 |
Cow position: | chr1:63503246-63503636 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 191 |
Show alignments to all cow chromosomes.