Cow genome map

Conread name: Spl1-SPL010023D07

Conread position: 1-307
Cow position: chr1:16581409-16581126 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 300, 60

Conread position: 1-307
Cow position: chr1:16586985-16586702 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 300, 60

Conread position: 1-317
Cow position: chr1:89495130-89494801 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 33, 64

Conread position: 3-312
Cow position: chr1:44972407-44972714 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 112

Conread position: 7-303
Cow position: chr1:57972614-57972324 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 136

Conread position: 9-297
Cow position: chr1:29225533-29225817 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 184
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 28, 22

Conread position: 11-316
Cow position: chr1:13581882-13581583 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 155, 81

Conread position: 16-638
Cow position: chr1:77115614-77114967 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 150

Conread position: 213-787
Cow position: chr1:46836879-46837465 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 61

Conread position: 292-717
Cow position: chr1:61590871-61590417 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 15, 30

Conread position: 351-721
Cow position: chr1:67909933-67910326 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 272
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 17, 343

Conread position: 351-787
Cow position: chr1:76620090-76619630 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 354-787
Cow position: chr1:72082155-72082602 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 318

Conread position: 358-680
Cow position: chr1:50248307-50247972 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 10, 170

Conread position: 358-717
Cow position: chr1:88387622-88387999 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 246

Conread position: 358-787
Cow position: chr1:22906150-22906594 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 13

Conread position: 358-787
Cow position: chr1:29412789-29412354 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 107

Conread position: 358-787
Cow position: chr1:65387710-65388161 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 15

Conread position: 358-787
Cow position: chr1:82922760-82922317 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 15

Conread position: 358-788
Cow position: chr1:48248312-48248753 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 18

Conread position: 358-791
Cow position: chr1:39539561-39539144 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 5, 19

Conread position: 358-791
Cow position: chr1:77463052-77463490 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 247

Conread position: 362-630
Cow position: chr1:32909223-32909496 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 63, 166

Conread position: 362-758
Cow position: chr1:24206294-24205904 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 32

Conread position: 363-787
Cow position: chr1:13581592-13581147 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 308
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 6, 211

Conread position: 366-696
Cow position: chr1:22345406-22345751 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 113

Conread position: 366-778
Cow position: chr1:69416880-69416457 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 157

Conread position: 373-583
Cow position: chr1:31359810-31360026 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 373-646
Cow position: chr1:31417100-31416804 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 49, 0

Conread position: 373-666
Cow position: chr1:29039446-29039757 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 373-671
Cow position: chr1:29976164-29975871 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 170
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 134, 42

Conread position: 373-672
Cow position: chr1:89733099-89732792 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 50, 139

Conread position: 373-734
Cow position: chr1:73197625-73197234 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 182

Conread position: 373-778
Cow position: chr1:79635580-79635160 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 215

Conread position: 373-778
Cow position: chr1:89769129-89768703 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 321

Conread position: 373-788
Cow position: chr1:41519362-41518948 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 65

Conread position: 373-791
Cow position: chr1:72945153-72945583 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 285

Conread position: 374-536
Cow position: chr1:91446856-91447018 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 90

Conread position: 374-701
Cow position: chr1:38417543-38417879 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 237
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 46, 223

Conread position: 374-754
Cow position: chr1:87969727-87970120 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 374-778
Cow position: chr1:61541704-61542114 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 225

Conread position: 374-787
Cow position: chr1:55320663-55320241 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 375-745
Cow position: chr1:56192753-56192361 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 322

Conread position: 375-787
Cow position: chr1:81862572-81862137 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 313

Conread position: 376-624
Cow position: chr1:76095650-76095385 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 75, 0

Conread position: 376-754
Cow position: chr1:57135830-57136219 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 256
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 152

Conread position: 376-778
Cow position: chr1:24652678-24653103 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 10

Conread position: 376-788
Cow position: chr1:67326522-67326111 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 91

Conread position: 376-788
Cow position: chr1:82367187-82367610 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 223

Conread position: 377-750
Cow position: chr1:72992906-72993295 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 55, 245

Conread position: 381-620
Cow position: chr1:78923643-78923897 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 39, 184

Conread position: 381-717
Cow position: chr1:23092067-23092407 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 41, 69

Conread position: 381-787
Cow position: chr1:31193128-31192725 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 32

Conread position: 386-788
Cow position: chr1:31402027-31401605 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 32, 171

Conread position: 414-788
Cow position: chr1:63503246-63503636 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 191

Show alignments to all cow chromosomes.