Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-307 |
| Cow position: | chr11:1489394-1489108 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 1-318 |
| Cow position: | chr11:30123090-30122772 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 1-781 |
| Cow position: | chr11:49553416-49552652 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 3-318 |
| Cow position: | chr11:21890226-21889919 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 351-581 |
| Cow position: | chr11:76372955-76372704 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 356-699 |
| Cow position: | chr11:31754987-31754643 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 358-787 |
| Cow position: | chr11:26784313-26784760 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 362-713 |
| Cow position: | chr11:32685950-32686300 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 362-781 |
| Cow position: | chr11:47759220-47758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 366-511 |
| Cow position: | chr11:21928132-21927982 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 366-752 |
| Cow position: | chr11:75553932-75553544 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 366-778 |
| Cow position: | chr11:26069983-26069545 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 348 |
| Conread position: | 366-778 |
| Cow position: | chr11:35894840-35894406 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 196 |
| Conread position: | 366-787 |
| Cow position: | chr11:3856278-3856720 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 410 |
| Conread position: | 367-778 |
| Cow position: | chr11:18887902-18888316 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 372-769 |
| Cow position: | chr11:18838346-18837981 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 109, 26 |
| Conread position: | 373-583 |
| Cow position: | chr11:25865769-25865542 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 373-778 |
| Cow position: | chr11:4026538-4026111 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 420 |
| Conread position: | 373-786 |
| Cow position: | chr11:10056575-10057009 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 373-786 |
| Cow position: | chr11:66730156-66730596 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 298 |
| Conread position: | 373-787 |
| Cow position: | chr11:27657502-27657947 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 373-787 |
| Cow position: | chr11:35254209-35253793 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 373-787 |
| Cow position: | chr11:67154755-67155187 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 48 |
| Conread position: | 374-719 |
| Cow position: | chr11:82123154-82122812 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 374-733 |
| Cow position: | chr11:50026667-50026295 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 198 |
| Conread position: | 374-785 |
| Cow position: | chr11:82147691-82147285 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 374-796 |
| Cow position: | chr11:9204769-9204347 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 375-774 |
| Cow position: | chr11:37285669-37286087 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 376-787 |
| Cow position: | chr11:43513551-43513119 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 285 |
| Conread position: | 377-787 |
| Cow position: | chr11:30253308-30253734 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 381-778 |
| Cow position: | chr11:46779769-46779363 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 400-627 |
| Cow position: | chr11:52808456-52808698 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 232 |
| Conread position: | 417-786 |
| Cow position: | chr11:49238833-49238453 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 450-628 |
| Cow position: | chr11:5647666-5647851 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 91 |
Show alignments to all cow chromosomes.