Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-147 |
| Cow position: | chr15:13391372-13391225 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-238 |
| Cow position: | chr15:51611042-51611277 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 1-594 |
| Cow position: | chr15:32515457-32514850 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 401 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 3-301 |
| Cow position: | chr15:4915887-4916186 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 347-792 |
| Cow position: | chr15:4108325-4107856 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 351-717 |
| Cow position: | chr15:580413-580792 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 357-536 |
| Cow position: | chr15:51613118-51613306 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 50, 168 |
| Conread position: | 358-695 |
| Cow position: | chr15:7551144-7551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 12, 234 |
| Conread position: | 358-741 |
| Cow position: | chr15:4672428-4672834 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 246 |
| Conread position: | 358-753 |
| Cow position: | chr15:11293437-11293031 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 358-785 |
| Cow position: | chr15:11626654-11627119 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 201 |
| Conread position: | 358-786 |
| Cow position: | chr15:35646680-35646233 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 156 |
| Conread position: | 358-787 |
| Cow position: | chr15:1299552-1299079 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 445 |
| Conread position: | 358-787 |
| Cow position: | chr15:2077660-2078100 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 358-787 |
| Cow position: | chr15:4813598-4814041 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 358-787 |
| Cow position: | chr15:18577714-18578164 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 358-787 |
| Cow position: | chr15:24794819-24795268 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 360-792 |
| Cow position: | chr15:32340336-32339898 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 363-745 |
| Cow position: | chr15:35736800-35737200 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 365-787 |
| Cow position: | chr15:44302091-44301654 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 373-627 |
| Cow position: | chr15:20361079-20360806 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 373-710 |
| Cow position: | chr15:24718345-24718694 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 373-743 |
| Cow position: | chr15:17149134-17149514 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 373-745 |
| Cow position: | chr15:1765333-1765721 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 373-785 |
| Cow position: | chr15:7964934-7964489 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 236 |
| Conread position: | 373-787 |
| Cow position: | chr15:21948130-21947715 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 373-792 |
| Cow position: | chr15:53339234-53339679 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 321 |
| Conread position: | 374-792 |
| Cow position: | chr15:8058981-8059424 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 318 |
| Conread position: | 376-611 |
| Cow position: | chr15:8410121-8410368 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 376-631 |
| Cow position: | chr15:21964999-21965279 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 376-658 |
| Cow position: | chr15:1238699-1239003 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 382-670 |
| Cow position: | chr15:7892329-7892017 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 406-690 |
| Cow position: | chr15:1830540-1830251 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 204 |
| Conread position: | 406-787 |
| Cow position: | chr15:6479434-6479831 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 418-779 |
| Cow position: | chr15:9003162-9002783 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 373 |
| Conread position: | 546-787 |
| Cow position: | chr15:42860338-42860087 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
Show alignments to all cow chromosomes.