Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-147 |
| Cow position: | chr2:85360239-85360090 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-242 |
| Cow position: | chr2:14823661-14823909 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 1-249 |
| Cow position: | chr2:36029790-36029544 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 1-296 |
| Cow position: | chr2:11693063-11693363 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 1-296 |
| Cow position: | chr2:34473994-34473708 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 1-303 |
| Cow position: | chr2:43961270-43961558 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 33, 162 |
| Conread position: | 1-610 |
| Cow position: | chr2:33795332-33794714 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 395 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 131 |
| Conread position: | 2-307 |
| Cow position: | chr2:36052438-36052128 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 35, 151 |
| Conread position: | 2-464 |
| Cow position: | chr2:315518-315053 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 201 |
| Conread position: | 3-212 |
| Cow position: | chr2:4926839-4926629 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-305 |
| Cow position: | chr2:45967430-45967146 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 11-307 |
| Cow position: | chr2:387193-386893 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 261 |
| Conread position: | 288-583 |
| Cow position: | chr2:63291172-63290856 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 355-787 |
| Cow position: | chr2:32458179-32457721 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 358-750 |
| Cow position: | chr2:56801760-56801370 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 210 |
| Conread position: | 358-753 |
| Cow position: | chr2:72187620-72187197 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 231 |
| Conread position: | 358-770 |
| Cow position: | chr2:78743451-78743876 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 358-778 |
| Cow position: | chr2:24471749-24471309 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 10, 266 |
| Conread position: | 358-788 |
| Cow position: | chr2:45938809-45938363 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 358-789 |
| Cow position: | chr2:16283216-16283635 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 358-792 |
| Cow position: | chr2:47602382-47601923 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 312 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 11, 245 |
| Conread position: | 362-680 |
| Cow position: | chr2:44650146-44650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 362-701 |
| Cow position: | chr2:20872597-20872247 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 362-730 |
| Cow position: | chr2:44934099-44933714 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 307 |
| Conread position: | 373-581 |
| Cow position: | chr2:1691865-1692090 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 373-665 |
| Cow position: | chr2:19225772-19226082 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 373-736 |
| Cow position: | chr2:31448741-31449119 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 373-745 |
| Cow position: | chr2:34052056-34052455 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 286 |
| Conread position: | 373-752 |
| Cow position: | chr2:55483251-55482861 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 261 |
| Conread position: | 373-787 |
| Cow position: | chr2:32434423-32433991 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 292 |
| Conread position: | 373-791 |
| Cow position: | chr2:72681219-72680794 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 374-717 |
| Cow position: | chr2:17823533-17823863 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 376-768 |
| Cow position: | chr2:11730672-11731072 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 380-779 |
| Cow position: | chr2:59412786-59412388 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 381-766 |
| Cow position: | chr2:35356910-35357302 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 209 |
| Conread position: | 381-791 |
| Cow position: | chr2:85082029-85081608 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 382-680 |
| Cow position: | chr2:13481792-13481505 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 407-788 |
| Cow position: | chr2:43961607-43962010 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 335 |
| Conread position: | 412-698 |
| Cow position: | chr2:12363043-12362736 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 413-575 |
| Cow position: | chr2:74858118-74858287 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 547-786 |
| Cow position: | chr2:24453487-24453246 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 547-786 |
| Cow position: | chr2:24462007-24461766 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 17 |
Show alignments to all cow chromosomes.