Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-200 |
| Cow position: | chr3:11198586-11198388 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 134 |
| Conread position: | 1-242 |
| Cow position: | chr3:19945206-19945441 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-312 |
| Cow position: | chr3:19720718-19720379 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-257 |
| Cow position: | chr3:63200573-63200823 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 10-307 |
| Cow position: | chr3:37625968-37626255 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 125 |
| Conread position: | 351-745 |
| Cow position: | chr3:2854187-2853782 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 17, 260 |
| Conread position: | 351-768 |
| Cow position: | chr3:15054440-15054006 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 351-787 |
| Cow position: | chr3:47087555-47087995 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 142 |
| Conread position: | 354-786 |
| Cow position: | chr3:84197078-84197553 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 262 |
| Conread position: | 355-769 |
| Cow position: | chr3:4736638-4736226 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 358-709 |
| Cow position: | chr3:18354742-18354393 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 358-738 |
| Cow position: | chr3:31416286-31416686 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 358-745 |
| Cow position: | chr3:6876908-6876511 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 358-751 |
| Cow position: | chr3:19720395-19719974 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 358-754 |
| Cow position: | chr3:63255409-63255807 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 103, 43 |
| Conread position: | 358-778 |
| Cow position: | chr3:2709599-2709157 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 358-787 |
| Cow position: | chr3:38494508-38494962 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 195 |
| Conread position: | 358-787 |
| Cow position: | chr3:74851862-74851426 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 358-791 |
| Cow position: | chr3:24354425-24354874 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 358-792 |
| Cow position: | chr3:29579896-29580347 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 358-792 |
| Cow position: | chr3:32200292-32200743 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 362-626 |
| Cow position: | chr3:63002290-63002004 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 363-736 |
| Cow position: | chr3:67164551-67164954 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 370-625 |
| Cow position: | chr3:73302548-73302818 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 373-637 |
| Cow position: | chr3:51938817-51938535 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 373-787 |
| Cow position: | chr3:19889351-19888938 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 72 |
| Conread position: | 373-791 |
| Cow position: | chr3:27864459-27864899 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 321 |
| Conread position: | 373-792 |
| Cow position: | chr3:72671246-72670828 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 297 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 374-635 |
| Cow position: | chr3:13476664-13476933 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 374-768 |
| Cow position: | chr3:24644507-24644916 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 374-778 |
| Cow position: | chr3:54772255-54772672 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 159 |
| Conread position: | 374-787 |
| Cow position: | chr3:34506061-34505630 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 414 |
| Conread position: | 375-737 |
| Cow position: | chr3:77424891-77425260 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 376-514 |
| Cow position: | chr3:56398471-56398620 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 378-720 |
| Cow position: | chr3:53412416-53412783 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 208 |
| Conread position: | 501-785 |
| Cow position: | chr3:37656793-37657077 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 49 |
Show alignments to all cow chromosomes.