Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-274 |
| Cow position: | chr5:27654681-27654955 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 1-311 |
| Cow position: | chr5:45701181-45701498 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 10-307 |
| Cow position: | chr5:48137466-48137172 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 10-316 |
| Cow position: | chr5:24107808-24107499 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 259 |
| Conread position: | 355-638 |
| Cow position: | chr5:33187865-33188139 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 358-606 |
| Cow position: | chr5:51308678-51308423 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 15 |
| Conread position: | 358-745 |
| Cow position: | chr5:10855643-10855235 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 358-745 |
| Cow position: | chr5:24099835-24100232 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 15 |
| Conread position: | 358-777 |
| Cow position: | chr5:13046829-13047256 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 358-787 |
| Cow position: | chr5:11115578-11115148 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 358-787 |
| Cow position: | chr5:45701486-45701946 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 358-787 |
| Cow position: | chr5:59061812-59062265 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 358-791 |
| Cow position: | chr5:54620223-54620673 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 358-792 |
| Cow position: | chr5:7275013-7275462 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 283 |
| Conread position: | 358-794 |
| Cow position: | chr5:28242205-28242648 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 217 |
| Conread position: | 358-797 |
| Cow position: | chr5:41527621-41527162 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 314 |
| Conread position: | 364-787 |
| Cow position: | chr5:14784190-14783756 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 288 |
| Conread position: | 373-700 |
| Cow position: | chr5:52434929-52435273 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 191 |
| Conread position: | 373-769 |
| Cow position: | chr5:23686711-23686316 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 373-787 |
| Cow position: | chr5:29434541-29434140 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 373-787 |
| Cow position: | chr5:40923459-40923048 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 373-787 |
| Cow position: | chr5:47893356-47892938 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 373-787 |
| Cow position: | chr5:49757516-49757082 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 373-788 |
| Cow position: | chr5:7142876-7142444 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 239 |
| Conread position: | 374-578 |
| Cow position: | chr5:58549183-58549385 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 374-769 |
| Cow position: | chr5:3822155-3822543 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 198 |
| Conread position: | 374-791 |
| Cow position: | chr5:18549356-18549776 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 157 |
| Conread position: | 375-792 |
| Cow position: | chr5:35527129-35527557 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 375-793 |
| Cow position: | chr5:24151964-24152416 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 314 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 376-603 |
| Cow position: | chr5:41960555-41960306 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 44, 238 |
| Conread position: | 381-787 |
| Cow position: | chr5:29767319-29767723 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 383-745 |
| Cow position: | chr5:73455455-73455817 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 178 |
| Conread position: | 386-791 |
| Cow position: | chr5:23755261-23754853 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 57 |
| Conread position: | 391-750 |
| Cow position: | chr5:41956209-41955843 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 247 |
Show alignments to all cow chromosomes.