Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-265 |
| Cow position: | chr9:39731123-39730853 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 60, 118 |
| Conread position: | 1-296 |
| Cow position: | chr9:2498042-2497739 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 144 |
| Conread position: | 1-324 |
| Cow position: | chr9:3963193-3962866 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 2-296 |
| Cow position: | chr9:2212075-2212373 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 2-318 |
| Cow position: | chr9:6977268-6977587 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 3-311 |
| Cow position: | chr9:1981212-1981519 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 69 |
| Conread position: | 9-302 |
| Cow position: | chr9:29329580-29329876 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 354-705 |
| Cow position: | chr9:3224408-3224028 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 357-576 |
| Cow position: | chr9:26553807-26554038 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 107 |
| Conread position: | 357-589 |
| Cow position: | chr9:49303424-49303183 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 358-627 |
| Cow position: | chr9:1981509-1981792 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 358-640 |
| Cow position: | chr9:62736553-62736264 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 358-649 |
| Cow position: | chr9:10937836-10938146 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 358-778 |
| Cow position: | chr9:27783432-27783871 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 15 |
| Conread position: | 358-781 |
| Cow position: | chr9:827864-827421 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 358-787 |
| Cow position: | chr9:1995145-1994711 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 358-787 |
| Cow position: | chr9:8402616-8403049 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 362-788 |
| Cow position: | chr9:3936200-3935777 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 316 |
| Conread position: | 372-787 |
| Cow position: | chr9:60462671-60462243 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 218 |
| Conread position: | 373-589 |
| Cow position: | chr9:59481542-59481315 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 184 |
| Conread position: | 373-745 |
| Cow position: | chr9:59428261-59428648 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 185 |
| Conread position: | 373-751 |
| Cow position: | chr9:25923709-25923341 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 8 |
| Conread position: | 373-778 |
| Cow position: | chr9:12183165-12182737 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 373-787 |
| Cow position: | chr9:26102006-26101574 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 182 |
| Conread position: | 374-749 |
| Cow position: | chr9:25188353-25188742 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 375-682 |
| Cow position: | chr9:47545457-47545780 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 48, 244 |
| Conread position: | 375-745 |
| Cow position: | chr9:26567860-26568245 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 375-749 |
| Cow position: | chr9:4717433-4717823 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 334 |
| Conread position: | 375-768 |
| Cow position: | chr9:44819401-44819810 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 227 |
| Conread position: | 376-589 |
| Cow position: | chr9:12725249-12725476 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 196 |
| Conread position: | 376-787 |
| Cow position: | chr9:5141959-5142390 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 284 |
| Conread position: | 378-768 |
| Cow position: | chr9:30488861-30489261 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 381-791 |
| Cow position: | chr9:4666434-4666868 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 305 |
| Conread position: | 382-745 |
| Cow position: | chr9:13474509-13474120 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 40, 252 |
| Conread position: | 382-778 |
| Cow position: | chr9:19158270-19157843 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 420 |
| Conread position: | 392-791 |
| Cow position: | chr9:54925812-54926230 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 205 |
Show alignments to all cow chromosomes.