Cow genome map
| Conread name: | Spl1-SPL010023D07 |
| Conread position: | 1-296 |
| Cow position: | chrX:41102624-41102335 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 2-295 |
| Cow position: | chrX:4411491-4411784 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 3-307 |
| Cow position: | chrX:4752783-4752471 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 303 |
| Conread position: | 11-389 |
| Cow position: | chrX:10416602-10416224 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 229 |
| Conread position: | 14-307 |
| Cow position: | chrX:27993613-27993311 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 228-792 |
| Cow position: | chrX:12183966-12184547 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 288-745 |
| Cow position: | chrX:27961921-27962387 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 189 |
| Conread position: | 354-652 |
| Cow position: | chrX:15486638-15486333 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 243 |
| Conread position: | 355-792 |
| Cow position: | chrX:24134124-24133688 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 358-679 |
| Cow position: | chrX:29097347-29097687 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 358-694 |
| Cow position: | chrX:29792885-29792528 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 10, 301 |
| Conread position: | 358-745 |
| Cow position: | chrX:15126078-15125676 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 358-768 |
| Cow position: | chrX:5651507-5651094 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 358-778 |
| Cow position: | chrX:16700846-16701284 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 358-778 |
| Cow position: | chrX:32123206-32123648 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 358-787 |
| Cow position: | chrX:3467496-3467044 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 358-787 |
| Cow position: | chrX:21268902-21268459 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 264 |
| Conread position: | 358-791 |
| Cow position: | chrX:19875655-19876122 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 447 |
| Conread position: | 358-792 |
| Cow position: | chrX:38148745-38149198 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 221 |
| Conread position: | 362-744 |
| Cow position: | chrX:3580184-3580589 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 362-787 |
| Cow position: | chrX:16037283-16036845 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 362-787 |
| Cow position: | chrX:20798460-20798900 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 254 |
| Conread position: | 364-792 |
| Cow position: | chrX:28868088-28867633 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 365-741 |
| Cow position: | chrX:2144124-2144522 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 210 |
| Conread position: | 372-682 |
| Cow position: | chrX:24476040-24475713 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 45, 255 |
| Conread position: | 373-613 |
| Cow position: | chrX:21059927-21060191 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 373-653 |
| Cow position: | chrX:21590150-21590445 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 373-662 |
| Cow position: | chrX:34219464-34219768 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 87, 207 |
| Conread position: | 373-665 |
| Cow position: | chrX:30130574-30130276 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 51, 220 |
| Conread position: | 373-687 |
| Cow position: | chrX:12314596-12314266 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 373-741 |
| Cow position: | chrX:13054996-13055373 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 373-745 |
| Cow position: | chrX:16780450-16780839 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 60 |
| Conread position: | 373-745 |
| Cow position: | chrX:39694810-39695197 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 321 |
| Conread position: | 373-787 |
| Cow position: | chrX:6013797-6013370 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 373-787 |
| Cow position: | chrX:18535580-18536002 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 373-787 |
| Cow position: | chrX:29886154-29886591 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 273 |
| Conread position: | 373-787 |
| Cow position: | chrX:36136403-36135971 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 373-788 |
| Cow position: | chrX:21643740-21643312 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 374-792 |
| Cow position: | chrX:41850049-41849617 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 278 |
| Conread position: | 375-626 |
| Cow position: | chrX:13081846-13081590 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 376-626 |
| Cow position: | chrX:46235911-46236181 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 376-778 |
| Cow position: | chrX:23212863-23212454 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 200 |
| Conread position: | 376-787 |
| Cow position: | chrX:17666628-17666195 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 202 |
| Conread position: | 380-628 |
| Cow position: | chrX:30061911-30061659 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 381-781 |
| Cow position: | chrX:30365628-30365206 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 117 |
| Conread position: | 381-787 |
| Cow position: | chrX:30070841-30071271 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 401-637 |
| Cow position: | chrX:6198008-6197760 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 153 |
| Conread position: | 406-791 |
| Cow position: | chrX:18768272-18768644 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 98, 158 |
Show alignments to all cow chromosomes.