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Cow genome map

           
Conread name:
           
Spl1-SPL010026C06
        

               
Conread position:
               
1-380
               

               
Cow position:
               
chrX:28786999-28787359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
2-627
               

               
Cow position:
               
chrX:31436108-31436726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 241
               

               
Conread position:
               
4-627
               

               
Cow position:
               
chrX:15545530-15546129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
14-265
               

               
Cow position:
               
chrX:41304099-41303849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
14-360
               

               
Cow position:
               
chrX:40452574-40452225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 275
               

               
Conread position:
               
14-508
               

               
Cow position:
               
chrX:27516173-27516646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
14-635
               

               
Cow position:
               
chrX:15147542-15146936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 52
               

               
Conread position:
               
15-390
               

               
Cow position:
               
chrX:27594540-27594164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
16-603
               

               
Cow position:
               
chrX:31443177-31442612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
17-274
               

               
Cow position:
               
chrX:43218036-43218292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
105, 215
               

               
Conread position:
               
18-634
               

               
Cow position:
               
chrX:21063932-21064544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
19-429
               

               
Cow position:
               
chrX:35680980-35681390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 212
               

               
Conread position:
               
20-504
               

               
Cow position:
               
chrX:26626038-26625548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 278
               

               
Conread position:
               
21-289
               

               
Cow position:
               
chrX:4630043-4629768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
22-511
               

               
Cow position:
               
chrX:7571556-7572037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
23-611
               

               
Cow position:
               
chrX:44396670-44397246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 104
               

               
Conread position:
               
24-130
               

               
Cow position:
               
chrX:22821664-22821771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 52
               

               
Conread position:
               
24-334
               

               
Cow position:
               
chrX:48227966-48227650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
24-538
               

               
Cow position:
               
chrX:20697952-20697454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 102
               

               
Conread position:
               
24-539
               

               
Cow position:
               
chrX:34401649-34402164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
24-592
               

               
Cow position:
               
chrX:41192341-41192905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 131
               

               
Conread position:
               
24-603
               

               
Cow position:
               
chrX:13912730-13913302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 225
               

               
Conread position:
               
24-613
               

               
Cow position:
               
chrX:45967813-45968377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 220
               

               
Conread position:
               
25-121
               

               
Cow position:
               
chrX:21662747-21662843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
25-181
               

               
Cow position:
               
chrX:10256490-10256335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
25-202
               

               
Cow position:
               
chrX:8325912-8326088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
25-205
               

               
Cow position:
               
chrX:47654956-47655133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
98, 155
               

               
Conread position:
               
25-245
               

               
Cow position:
               
chrX:12810772-12810991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 140
               

               
Conread position:
               
25-288
               

               
Cow position:
               
chrX:25283488-25283234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 86
               

               
Conread position:
               
25-289
               

               
Cow position:
               
chrX:10916406-10916664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 195
               

               
Conread position:
               
25-313
               

               
Cow position:
               
chrX:32188707-32188421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
98, 200
               

               
Conread position:
               
25-354
               

               
Cow position:
               
chrX:33827379-33827039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
25-354
               

               
Cow position:
               
chrX:37133882-37133551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
25-370
               

               
Cow position:
               
chrX:42462096-42461750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 270
               

               
Conread position:
               
25-371
               

               
Cow position:
               
chrX:19019440-19019110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 86
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chrX:3405704-3405360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 145
               

               
Conread position:
               
25-382
               

               
Cow position:
               
chrX:35609638-35609993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 257
               

               
Conread position:
               
25-382
               

               
Cow position:
               
chrX:48247181-48246844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
25-403
               

               
Cow position:
               
chrX:20582682-20583044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 216
               

               
Conread position:
               
25-409
               

               
Cow position:
               
chrX:35388255-35387868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 263
               

               
Conread position:
               
25-422
               

               
Cow position:
               
chrX:36250210-36249820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 255
               

               
Conread position:
               
25-439
               

               
Cow position:
               
chrX:34192333-34192728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 82
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chrX:13785726-13785301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 226
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chrX:17497748-17498145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 215
               

               
Conread position:
               
25-459
               

               
Cow position:
               
chrX:24105279-24105702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
25-471
               

               
Cow position:
               
chrX:25946190-25945746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
25-497
               

               
Cow position:
               
chrX:11082962-11082506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 146
               

               
Conread position:
               
25-512
               

               
Cow position:
               
chrX:42470285-42469810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 210
               

               
Conread position:
               
25-513
               

               
Cow position:
               
chrX:37232063-37232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
25-517
               

               
Cow position:
               
chrX:917718-917232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 146
               

               
Conread position:
               
25-521
               

               
Cow position:
               
chrX:36010240-36009773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
98, 142
               

               
Conread position:
               
25-523
               

               
Cow position:
               
chrX:3130216-3130713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 233
               

               
Conread position:
               
25-524
               

               
Cow position:
               
chrX:4044206-4043724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 154
               

               
Conread position:
               
25-524
               

               
Cow position:
               
chrX:7695416-7695891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 59
               

               
Conread position:
               
25-531
               

               
Cow position:
               
chrX:23583210-23583711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 259
               

               
Conread position:
               
25-538
               

               
Cow position:
               
chrX:11718126-11717626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
25-539
               

               
Cow position:
               
chrX:14599188-14599690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
25-539
               

               
Cow position:
               
chrX:40269128-40269652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 270
               

               
Conread position:
               
25-542
               

               
Cow position:
               
chrX:5871965-5872478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 103
               

               
Conread position:
               
25-542
               

               
Cow position:
               
chrX:8796903-8797410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 59
               

               
Conread position:
               
25-556
               

               
Cow position:
               
chrX:32171230-32170712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 197
               

               
Conread position:
               
25-567
               

               
Cow position:
               
chrX:34532183-34532709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 137
               

               
Conread position:
               
25-579
               

               
Cow position:
               
chrX:13648132-13647581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 204
               

               
Conread position:
               
25-588
               

               
Cow position:
               
chrX:12309736-12309173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 139
               

               
Conread position:
               
25-590
               

               
Cow position:
               
chrX:47343944-47344513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 234
               

               
Conread position:
               
25-591
               

               
Cow position:
               
chrX:34238372-34238938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
25-592
               

               
Cow position:
               
chrX:15596697-15597244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 82
               

               
Conread position:
               
25-600
               

               
Cow position:
               
chrX:6543908-6544469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 258
               

               
Conread position:
               
25-600
               

               
Cow position:
               
chrX:7277580-7278130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
25-601
               

               
Cow position:
               
chrX:22812714-22813290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 146
               

               
Conread position:
               
25-601
               

               
Cow position:
               
chrX:27705245-27705812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 153
               

               
Conread position:
               
25-601
               

               
Cow position:
               
chrX:35223954-35224501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
25-602
               

               
Cow position:
               
chrX:5118831-5118272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
25-603
               

               
Cow position:
               
chrX:9252522-9251936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 108
               

               
Conread position:
               
25-603
               

               
Cow position:
               
chrX:11655730-11656305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 269
               

               
Conread position:
               
25-603
               

               
Cow position:
               
chrX:14884310-14883730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 38
               

               
Conread position:
               
25-603
               

               
Cow position:
               
chrX:34376606-34377166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
25-603
               

               
Cow position:
               
chrX:37072058-37072613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
25-603
               

               
Cow position:
               
chrX:45430366-45429804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 260
               

               
Conread position:
               
25-606
               

               
Cow position:
               
chrX:33855588-33854996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
25-607
               

               
Cow position:
               
chrX:31949278-31948702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
25-607
               

               
Cow position:
               
chrX:47211198-47210605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 271
               

               
Conread position:
               
25-608
               

               
Cow position:
               
chrX:25035734-25035150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 139
               

               
Conread position:
               
25-611
               

               
Cow position:
               
chrX:31250044-31250625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 53
               

               
Conread position:
               
25-611
               

               
Cow position:
               
chrX:34554387-34554959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 62
               

               
Conread position:
               
25-614
               

               
Cow position:
               
chrX:4633199-4632615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 87
               

               
Conread position:
               
25-614
               

               
Cow position:
               
chrX:28847224-28846655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
460, 100
               

               
Conread position:
               
25-615
               

               
Cow position:
               
chrX:30338267-30337715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
25-623
               

               
Cow position:
               
chrX:31729110-31729682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
25-627
               

               
Cow position:
               
chrX:7178564-7179132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 100
               

               
Conread position:
               
25-628
               

               
Cow position:
               
chrX:9651393-9650780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 116
               

               
Conread position:
               
25-630
               

               
Cow position:
               
chrX:17794647-17795229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
494, 103
               

               
Conread position:
               
26-237
               

               
Cow position:
               
chrX:2351715-2351927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
26-251
               

               
Cow position:
               
chrX:22115629-22115403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
26-285
               

               
Cow position:
               
chrX:6906164-6905902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 139
               

               
Conread position:
               
26-287
               

               
Cow position:
               
chrX:126444-126704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 229
               

               
Conread position:
               
26-295
               

               
Cow position:
               
chrX:3161363-3161092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 256
               

               
Conread position:
               
26-298
               

               
Cow position:
               
chrX:2524077-2523803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 257
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chrX:40515559-40515826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
262, 17
               

               
Conread position:
               
26-307
               

               
Cow position:
               
chrX:41733540-41733259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 139
               

               
Conread position:
               
26-330
               

               
Cow position:
               
chrX:7381977-7382288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 63
               

               
Conread position:
               
26-334
               

               
Cow position:
               
chrX:7806031-7806338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
26-334
               

               
Cow position:
               
chrX:36840520-36840834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
102, 151
               

               
Conread position:
               
26-336
               

               
Cow position:
               
chrX:35937416-35937120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
224, 99
               

               
Conread position:
               
26-337
               

               
Cow position:
               
chrX:11581590-11581906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
26-340
               

               
Cow position:
               
chrX:4123489-4123802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 6
               

               
Conread position:
               
26-351
               

               
Cow position:
               
chrX:45658427-45658104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
100, 255
               

               
Conread position:
               
26-354
               

               
Cow position:
               
chrX:38967304-38967626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
26-367
               

               
Cow position:
               
chrX:11561796-11562148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
85, 160
               

               
Conread position:
               
26-367
               

               
Cow position:
               
chrX:11806363-11806022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
26-367
               

               
Cow position:
               
chrX:21665938-21665603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 84
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chrX:160379-160037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 147
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chrX:33803362-33803011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 59
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chrX:35409321-35409655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
26-382
               

               
Cow position:
               
chrX:10437998-10437664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
26-383
               

               
Cow position:
               
chrX:2786893-2786551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 132
               

               
Conread position:
               
26-385
               

               
Cow position:
               
chrX:17271635-17271275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
26-411
               

               
Cow position:
               
chrX:38439127-38439511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
26-419
               

               
Cow position:
               
chrX:41743566-41743952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 144
               

               
Conread position:
               
26-421
               

               
Cow position:
               
chrX:12115694-12116087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 117
               

               
Conread position:
               
26-429
               

               
Cow position:
               
chrX:28105579-28105966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 69
               

               
Conread position:
               
26-433
               

               
Cow position:
               
chrX:8899677-8900079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 272
               

               
Conread position:
               
26-434
               

               
Cow position:
               
chrX:41198739-41199161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 248
               

               
Conread position:
               
26-435
               

               
Cow position:
               
chrX:25232239-25232647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 227
               

               
Conread position:
               
26-436
               

               
Cow position:
               
chrX:10306323-10306730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
26-466
               

               
Cow position:
               
chrX:42507991-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 99
               

               
Conread position:
               
26-474
               

               
Cow position:
               
chrX:37843373-37843810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 256
               

               
Conread position:
               
26-492
               

               
Cow position:
               
chrX:26441127-26440677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 259
               

               
Conread position:
               
26-492
               

               
Cow position:
               
chrX:47967253-47967718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 111
               

               
Conread position:
               
26-496
               

               
Cow position:
               
chrX:38936352-38936815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 149
               

               
Conread position:
               
26-497
               

               
Cow position:
               
chrX:45089089-45089562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 177
               

               
Conread position:
               
26-506
               

               
Cow position:
               
chrX:10301998-10302466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
26-509
               

               
Cow position:
               
chrX:18695268-18694803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 230
               

               
Conread position:
               
26-511
               

               
Cow position:
               
chrX:19689868-19690345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
26-521
               

               
Cow position:
               
chrX:32743191-32743673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 225
               

               
Conread position:
               
26-524
               

               
Cow position:
               
chrX:878717-878237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
26-527
               

               
Cow position:
               
chrX:11073552-11073046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 264
               

               
Conread position:
               
26-533
               

               
Cow position:
               
chrX:45113289-45113774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 94
               

               
Conread position:
               
26-537
               

               
Cow position:
               
chrX:24424739-24424245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
26-539
               

               
Cow position:
               
chrX:5017753-5017267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 114
               

               
Conread position:
               
26-539
               

               
Cow position:
               
chrX:28134002-28134496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 100
               

               
Conread position:
               
26-539
               

               
Cow position:
               
chrX:38227437-38226952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 209
               

               
Conread position:
               
26-539
               

               
Cow position:
               
chrX:40481218-40480707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
26-544
               

               
Cow position:
               
chrX:30543629-30543119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 130
               

               
Conread position:
               
26-544
               

               
Cow position:
               
chrX:34502576-34503085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 99
               

               
Conread position:
               
26-566
               

               
Cow position:
               
chrX:28866336-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 103
               

               
Conread position:
               
26-578
               

               
Cow position:
               
chrX:24288260-24287729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 100
               

               
Conread position:
               
26-584
               

               
Cow position:
               
chrX:46771319-46770754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 334
               

               
Conread position:
               
26-592
               

               
Cow position:
               
chrX:10831859-10831265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 277
               

               
Conread position:
               
26-593
               

               
Cow position:
               
chrX:13868350-13868921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 99
               

               
Conread position:
               
26-595
               

               
Cow position:
               
chrX:1055740-1055162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 150
               

               
Conread position:
               
26-595
               

               
Cow position:
               
chrX:47991251-47991811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
202, 86
               

               
Conread position:
               
26-600
               

               
Cow position:
               
chrX:14974075-14973533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 90
               

               
Conread position:
               
26-600
               

               
Cow position:
               
chrX:15007498-15006935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 255
               

               
Conread position:
               
26-600
               

               
Cow position:
               
chrX:41879277-41878713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 67
               

               
Conread position:
               
26-600
               

               
Cow position:
               
chrX:44192788-44192218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 63
               

               
Conread position:
               
26-601
               

               
Cow position:
               
chrX:11844585-11844011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
347, 94
               

               
Conread position:
               
26-601
               

               
Cow position:
               
chrX:34441794-34441228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
504, 99
               

               
Conread position:
               
26-601
               

               
Cow position:
               
chrX:42247523-42246956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
500, 99
               

               
Conread position:
               
26-603
               

               
Cow position:
               
chrX:12249454-12250042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 197
               

               
Conread position:
               
26-603
               

               
Cow position:
               
chrX:38963764-38964324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
26-603
               

               
Cow position:
               
chrX:41122725-41123272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
26-603
               

               
Cow position:
               
chrX:42994267-42994823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 187
               

               
Conread position:
               
26-603
               

               
Cow position:
               
chrX:44054457-44055030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
26-604
               

               
Cow position:
               
chrX:35268546-35269084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
26-606
               

               
Cow position:
               
chrX:34564953-34565515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
499, 92
               

               
Conread position:
               
26-607
               

               
Cow position:
               
chrX:27442899-27442307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 99
               

               
Conread position:
               
26-612
               

               
Cow position:
               
chrX:38094872-38094290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 144
               

               
Conread position:
               
26-613
               

               
Cow position:
               
chrX:21592939-21593528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 99
               

               
Conread position:
               
26-614
               

               
Cow position:
               
chrX:161081-161637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 159
               

               
Conread position:
               
26-614
               

               
Cow position:
               
chrX:28632824-28632244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
26-614
               

               
Cow position:
               
chrX:37489371-37489966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 221
               

               
Conread position:
               
26-614
               

               
Cow position:
               
chrX:46532867-46532253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 155
               

               
Conread position:
               
26-623
               

               
Cow position:
               
chrX:41526865-41526288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
26-624
               

               
Cow position:
               
chrX:15485972-15485384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 99
               

               
Conread position:
               
26-625
               

               
Cow position:
               
chrX:20887991-20887403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 144
               

               
Conread position:
               
26-625
               

               
Cow position:
               
chrX:23564144-23563543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 269
               

               
Conread position:
               
26-626
               

               
Cow position:
               
chrX:40827094-40826500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 188
               

               
Conread position:
               
26-627
               

               
Cow position:
               
chrX:13177804-13177233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 77
               

               
Conread position:
               
26-628
               

               
Cow position:
               
chrX:151551-152158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 193
               

               
Conread position:
               
26-628
               

               
Cow position:
               
chrX:27446344-27446931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 99
               

               
Conread position:
               
26-630
               

               
Cow position:
               
chrX:41790784-41790179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
26-634
               

               
Cow position:
               
chrX:38218371-38218973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 99
               

               
Conread position:
               
27-313
               

               
Cow position:
               
chrX:11820013-11820292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
27-361
               

               
Cow position:
               
chrX:15329307-15329631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
99, 143
               

               
Conread position:
               
27-371
               

               
Cow position:
               
chrX:32747312-32747679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
27-378
               

               
Cow position:
               
chrX:28111150-28111510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
27-421
               

               
Cow position:
               
chrX:47379813-47379427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 202
               

               
Conread position:
               
27-509
               

               
Cow position:
               
chrX:42171645-42171167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
27-592
               

               
Cow position:
               
chrX:1616397-1615842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 263
               

               
Conread position:
               
27-601
               

               
Cow position:
               
chrX:3654262-3654828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 98
               

               
Conread position:
               
27-601
               

               
Cow position:
               
chrX:20340237-20339670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 197
               

               
Conread position:
               
27-603
               

               
Cow position:
               
chrX:6413700-6414259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 186
               

               
Conread position:
               
27-603
               

               
Cow position:
               
chrX:42587775-42587195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 196
               

               
Conread position:
               
28-345
               

               
Cow position:
               
chrX:44731255-44731567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
221, 99
               

               
Conread position:
               
28-372
               

               
Cow position:
               
chrX:7718511-7718850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 88
               

               
Conread position:
               
28-497
               

               
Cow position:
               
chrX:7054080-7053620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 145
               

               
Conread position:
               
29-360
               

               
Cow position:
               
chrX:41403617-41403963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 277
               

               
Conread position:
               
29-360
               

               
Cow position:
               
chrX:41410165-41410511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 277
               

               
Conread position:
               
29-513
               

               
Cow position:
               
chrX:47481456-47481928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
29-519
               

               
Cow position:
               
chrX:47054860-47054387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
29-614
               

               
Cow position:
               
chrX:31489168-31489758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 156
               

               
Conread position:
               
30-365
               

               
Cow position:
               
chrX:44737334-44736996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
98, 129
               

               
Conread position:
               
31-286
               

               
Cow position:
               
chrX:25329671-25329930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
31-429
               

               
Cow position:
               
chrX:15139890-15139499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
31-539
               

               
Cow position:
               
chrX:40558018-40557524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 198
               

               
Conread position:
               
33-588
               

               
Cow position:
               
chrX:36778065-36778605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 257
               

               
Conread position:
               
33-616
               

               
Cow position:
               
chrX:26492661-26493245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 230
               

               
Conread position:
               
35-518
               

               
Cow position:
               
chrX:10412324-10411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 143
               

               
Conread position:
               
35-524
               

               
Cow position:
               
chrX:43527164-43527651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 339
               

               
Conread position:
               
36-285
               

               
Cow position:
               
chrX:13069073-13068824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
37-539
               

               
Cow position:
               
chrX:38007104-38006614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 250
               

               
Conread position:
               
40-422
               

               
Cow position:
               
chrX:6234767-6234409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
40-485
               

               
Cow position:
               
chrX:7645925-7646355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 199
               

               
Conread position:
               
40-601
               

               
Cow position:
               
chrX:12290404-12290943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 56
               

               
Conread position:
               
40-603
               

               
Cow position:
               
chrX:43114839-43115376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
40-614
               

               
Cow position:
               
chrX:45501815-45502373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 247
               

               
Conread position:
               
42-421
               

               
Cow position:
               
chrX:14924669-14925040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 151
               

               
Conread position:
               
43-533
               

               
Cow position:
               
chrX:29289246-29289730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 244
               

               
Conread position:
               
44-320
               

               
Cow position:
               
chrX:42855082-42855359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 82
               

               
Conread position:
               
45-549
               

               
Cow position:
               
chrX:33205320-33204803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 330
               

               
Conread position:
               
46-358
               

               
Cow position:
               
chrX:25337850-25338167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 243
               

               
Conread position:
               
46-380
               

               
Cow position:
               
chrX:11674731-11675066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 241
               

               
Conread position:
               
48-349
               

               
Cow position:
               
chrX:36692910-36693209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 232
               

               
Conread position:
               
49-286
               

               
Cow position:
               
chrX:46448152-46447914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
49-542
               

               
Cow position:
               
chrX:33639643-33640136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
49-628
               

               
Cow position:
               
chrX:5638492-5637922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 120
               

               
Conread position:
               
51-378
               

               
Cow position:
               
chrX:9161266-9161587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
53-424
               

               
Cow position:
               
chrX:34990721-34991079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 128
               

               
Conread position:
               
53-483
               

               
Cow position:
               
chrX:44873861-44873459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
58-434
               

               
Cow position:
               
chrX:48243767-48243413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
68, 159
               

               
Conread position:
               
58-435
               

               
Cow position:
               
chrX:28845529-28845887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
59-367
               

               
Cow position:
               
chrX:19188622-19188929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 226
               

               
Conread position:
               
60-534
               

               
Cow position:
               
chrX:45373605-45373131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 136
               

               
Conread position:
               
62-627
               

               
Cow position:
               
chrX:47873652-47873083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 140
               

               
Conread position:
               
63-614
               

               
Cow position:
               
chrX:7350992-7351541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 62
               

               
Conread position:
               
64-328
               

               
Cow position:
               
chrX:23061145-23061398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
65-437
               

               
Cow position:
               
chrX:20709767-20710130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 60
               

               
Conread position:
               
70-545
               

               
Cow position:
               
chrX:45414603-45414141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 213
               

               
Conread position:
               
70-626
               

               
Cow position:
               
chrX:30133627-30133068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 129
               

               
Conread position:
               
71-382
               

               
Cow position:
               
chrX:5047199-5046892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
73-359
               

               
Cow position:
               
chrX:33020186-33020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
76-429
               

               
Cow position:
               
chrX:19015145-19015485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 151
               

               
Conread position:
               
76-626
               

               
Cow position:
               
chrX:41238660-41238112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
77-649
               

               
Cow position:
               
chrX:33466321-33466894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
78-615
               

               
Cow position:
               
chrX:46033013-46032486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
79-421
               

               
Cow position:
               
chrX:25237884-25238219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
80-303
               

               
Cow position:
               
chrX:6607116-6607354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
82-280
               

               
Cow position:
               
chrX:48675785-48675985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
82-366
               

               
Cow position:
               
chrX:35041931-35042214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 43
               

               
Conread position:
               
82-636
               

               
Cow position:
               
chrX:1176265-1175730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chrX:44835106-44834680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 178
               

               
Conread position:
               
89-497
               

               
Cow position:
               
chrX:46723025-46722618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 206
               

               
Conread position:
               
89-626
               

               
Cow position:
               
chrX:4269351-4268820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
90-490
               

               
Cow position:
               
chrX:2467597-2467993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
91-497
               

               
Cow position:
               
chrX:48195323-48194919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 201
               

               
Conread position:
               
91-587
               

               
Cow position:
               
chrX:31294822-31294358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
91-614
               

               
Cow position:
               
chrX:16762490-16763006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
92-438
               

               
Cow position:
               
chrX:42874697-42875040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
92-538
               

               
Cow position:
               
chrX:37836308-37836735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
92-600
               

               
Cow position:
               
chrX:38641982-38642466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
93-372
               

               
Cow position:
               
chrX:9997611-9997339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 25
               

               
Conread position:
               
93-422
               

               
Cow position:
               
chrX:40647698-40648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
93-592
               

               
Cow position:
               
chrX:8730799-8731310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 197
               

               
Conread position:
               
95-603
               

               
Cow position:
               
chrX:8925428-8925907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
97-370
               

               
Cow position:
               
chrX:7496973-7497234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
98-285
               

               
Cow position:
               
chrX:29925851-29925668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
98-429
               

               
Cow position:
               
chrX:47191670-47191359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
98-593
               

               
Cow position:
               
chrX:30921910-30922389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
99-382
               

               
Cow position:
               
chrX:30763693-30763415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
214, 59
               

               
Conread position:
               
100-303
               

               
Cow position:
               
chrX:16531726-16531928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
100-606
               

               
Cow position:
               
chrX:40183623-40183124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 195
               

               
Conread position:
               
101-439
               

               
Cow position:
               
chrX:12018003-12018350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 130
               

               
Conread position:
               
101-513
               

               
Cow position:
               
chrX:488218-488636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
102-611
               

               
Cow position:
               
chrX:27509292-27508790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 167
               

               
Conread position:
               
103-497
               

               
Cow position:
               
chrX:45404104-45403709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 192
               

               
Conread position:
               
103-528
               

               
Cow position:
               
chrX:17541694-17542106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
104-483
               

               
Cow position:
               
chrX:45992943-45993332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
106-539
               

               
Cow position:
               
chrX:17725711-17726132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
106-626
               

               
Cow position:
               
chrX:45598870-45598357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 176
               

               
Conread position:
               
112-277
               

               
Cow position:
               
chrX:47247170-47247007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
11, 143
               

               
Conread position:
               
112-300
               

               
Cow position:
               
chrX:7362114-7361923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
112-405
               

               
Cow position:
               
chrX:23497923-23497643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
112-603
               

               
Cow position:
               
chrX:47588440-47588940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
112-632
               

               
Cow position:
               
chrX:27432179-27431668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 172
               

               
Conread position:
               
113-429
               

               
Cow position:
               
chrX:20752003-20752303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
113-488
               

               
Cow position:
               
chrX:45393377-45392994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
113-521
               

               
Cow position:
               
chrX:17662855-17662458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
113-539
               

               
Cow position:
               
chrX:42588930-42588500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
281, 170
               

               
Conread position:
               
113-600
               

               
Cow position:
               
chrX:9635439-9634968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 16
               

               
Conread position:
               
114-595
               

               
Cow position:
               
chrX:20151591-20152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
115-614
               

               
Cow position:
               
chrX:32020380-32019895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 176
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chrX:24259832-24259577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
117-600
               

               
Cow position:
               
chrX:32329903-32330395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
119-505
               

               
Cow position:
               
chrX:35258981-35258607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
119-537
               

               
Cow position:
               
chrX:28878415-28878018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
119-603
               

               
Cow position:
               
chrX:24366082-24365595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 35
               

               
Conread position:
               
119-614
               

               
Cow position:
               
chrX:41673849-41674338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 170
               

               
Conread position:
               
119-628
               

               
Cow position:
               
chrX:25816149-25815650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 117
               

               
Conread position:
               
122-437
               

               
Cow position:
               
chrX:678818-678499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
123-560
               

               
Cow position:
               
chrX:17888654-17888246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 9
               

               
Conread position:
               
123-591
               

               
Cow position:
               
chrX:9360636-9361099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
118, 20
               

               
Conread position:
               
125-314
               

               
Cow position:
               
chrX:48536913-48536724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
128-650
               

               
Cow position:
               
chrX:20677121-20677637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
131-347
               

               
Cow position:
               
chrX:2206785-2206581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
131-348
               

               
Cow position:
               
chrX:46984743-46984525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 197
               

               
Conread position:
               
131-354
               

               
Cow position:
               
chrX:25411599-25411819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
131-360
               

               
Cow position:
               
chrX:6563271-6563505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chrX:43049101-43049336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
131-371
               

               
Cow position:
               
chrX:8682171-8681932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 75
               

               
Conread position:
               
131-437
               

               
Cow position:
               
chrX:26876122-26875825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 38
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chrX:9855059-9855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
112, 155
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chrX:9953900-9954206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
122, 155
               

               
Conread position:
               
131-492
               

               
Cow position:
               
chrX:21004443-21004795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
131-496
               

               
Cow position:
               
chrX:2029149-2029500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 38
               

               
Conread position:
               
131-496
               

               
Cow position:
               
chrX:29032176-29032525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
181, 39
               

               
Conread position:
               
131-497
               

               
Cow position:
               
chrX:11856188-11856546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
131-508
               

               
Cow position:
               
chrX:11455293-11454921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
131-539
               

               
Cow position:
               
chrX:619249-618850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 155
               

               
Conread position:
               
131-539
               

               
Cow position:
               
chrX:13382083-13382483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 156
               

               
Conread position:
               
131-539
               

               
Cow position:
               
chrX:23514259-23513866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
131-539
               

               
Cow position:
               
chrX:27394255-27393868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
131-542
               

               
Cow position:
               
chrX:33493534-33493936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
131-557
               

               
Cow position:
               
chrX:16416267-16416684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 49
               

               
Conread position:
               
131-557
               

               
Cow position:
               
chrX:39558589-39558177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
131-575
               

               
Cow position:
               
chrX:21672310-21672761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 155
               

               
Conread position:
               
131-590
               

               
Cow position:
               
chrX:37119358-37119789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
366, 87
               

               
Conread position:
               
131-593
               

               
Cow position:
               
chrX:34543546-34544003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 75
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chrX:40035690-40035215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chrX:44961506-44961982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 131
               

               
Conread position:
               
131-603
               

               
Cow position:
               
chrX:47249029-47248570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 141
               

               
Conread position:
               
131-615
               

               
Cow position:
               
chrX:7513273-7513750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
131-622
               

               
Cow position:
               
chrX:22624240-22624706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
131-624
               

               
Cow position:
               
chrX:38935040-38935526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 163
               

               
Conread position:
               
131-628
               

               
Cow position:
               
chrX:42492751-42492269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 24
               

               
Conread position:
               
132-370
               

               
Cow position:
               
chrX:17631042-17630812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
132-370
               

               
Cow position:
               
chrX:42282196-42282422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
132-371
               

               
Cow position:
               
chrX:30833078-30832854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
132-371
               

               
Cow position:
               
chrX:35284377-35284615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
132-385
               

               
Cow position:
               
chrX:44053018-44053266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
132-422
               

               
Cow position:
               
chrX:39938757-39938479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
132-512
               

               
Cow position:
               
chrX:1514644-1514288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
132-539
               

               
Cow position:
               
chrX:34663079-34662689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 23
               

               
Conread position:
               
132-542
               

               
Cow position:
               
chrX:9416933-9416523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 150
               

               
Conread position:
               
132-614
               

               
Cow position:
               
chrX:45448647-45449151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 130
               

               
Conread position:
               
132-627
               

               
Cow position:
               
chrX:32419970-32420458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 156
               

               
Conread position:
               
133-603
               

               
Cow position:
               
chrX:11939163-11938726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 46
               

               
Conread position:
               
134-434
               

               
Cow position:
               
chrX:40788965-40789265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
10, 154
               

               
Conread position:
               
134-435
               

               
Cow position:
               
chrX:41167202-41166908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
134-490
               

               
Cow position:
               
chrX:27680165-27680507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
134-497
               

               
Cow position:
               
chrX:48652965-48652605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
135-345
               

               
Cow position:
               
chrX:40116188-40116390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chrX:2648587-2648358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
135-519
               

               
Cow position:
               
chrX:6690485-6690122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 104
               

               
Conread position:
               
135-542
               

               
Cow position:
               
chrX:27772193-27771807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
136-270
               

               
Cow position:
               
chrX:27176556-27176422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
136-363
               

               
Cow position:
               
chrX:30421175-30420950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
136-460
               

               
Cow position:
               
chrX:11589828-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
136-529
               

               
Cow position:
               
chrX:15814861-15815231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
384, 88
               

               
Conread position:
               
136-539
               

               
Cow position:
               
chrX:38852960-38853354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
137-600
               

               
Cow position:
               
chrX:22074565-22075019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 145
               

               
Conread position:
               
138-601
               

               
Cow position:
               
chrX:48010360-48010830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 157
               

               
Conread position:
               
138-628
               

               
Cow position:
               
chrX:30963106-30962626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 102
               

               
Conread position:
               
139-367
               

               
Cow position:
               
chrX:42339169-42338955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
139-471
               

               
Cow position:
               
chrX:12405602-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chrX:6639892-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
140-351
               

               
Cow position:
               
chrX:45566398-45566611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
140-367
               

               
Cow position:
               
chrX:47757161-47756937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
140-371
               

               
Cow position:
               
chrX:2383257-2383484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
140-524
               

               
Cow position:
               
chrX:45174612-45174994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
85, 147
               

               
Conread position:
               
140-544
               

               
Cow position:
               
chrX:6278738-6278335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 147
               

               
Conread position:
               
140-585
               

               
Cow position:
               
chrX:36975717-36976161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 143
               

               
Conread position:
               
140-609
               

               
Cow position:
               
chrX:9201315-9201775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
140-618
               

               
Cow position:
               
chrX:38549216-38549689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 147
               

               
Conread position:
               
140-634
               

               
Cow position:
               
chrX:17231502-17231994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 100
               

               
Conread position:
               
141-382
               

               
Cow position:
               
chrX:18456161-18456408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
99, 144
               

               
Conread position:
               
141-509
               

               
Cow position:
               
chrX:37910222-37910574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 14
               

               
Conread position:
               
141-520
               

               
Cow position:
               
chrX:32431396-32431763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
141-529
               

               
Cow position:
               
chrX:5900226-5900610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 106
               

               
Conread position:
               
141-586
               

               
Cow position:
               
chrX:22821816-22822265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 155
               

               
Conread position:
               
141-608
               

               
Cow position:
               
chrX:36197736-36198207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 150
               

               
Conread position:
               
142-370
               

               
Cow position:
               
chrX:37048811-37048583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
142-513
               

               
Cow position:
               
chrX:7161842-7162188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
142-585
               

               
Cow position:
               
chrX:35542661-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 141
               

               
Conread position:
               
142-627
               

               
Cow position:
               
chrX:42381330-42380862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 98
               

               
Conread position:
               
142-633
               

               
Cow position:
               
chrX:7721754-7722232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 145
               

               
Conread position:
               
143-293
               

               
Cow position:
               
chrX:18812029-18812175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
143-370
               

               
Cow position:
               
chrX:13265849-13265631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
143-382
               

               
Cow position:
               
chrX:21664952-21664716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
143-545
               

               
Cow position:
               
chrX:10959631-10959226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
144-349
               

               
Cow position:
               
chrX:4482734-4482941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chrX:48684450-48684239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
204, 94
               

               
Conread position:
               
147-421
               

               
Cow position:
               
chrX:29509669-29509398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 147
               

               
Conread position:
               
147-432
               

               
Cow position:
               
chrX:4750523-4750250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
268, 26
               

               
Conread position:
               
147-497
               

               
Cow position:
               
chrX:47303105-47302761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
100, 147
               

               
Conread position:
               
147-601
               

               
Cow position:
               
chrX:21642703-21642256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
147-624
               

               
Cow position:
               
chrX:28013665-28013192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
280, 98
               

               
Conread position:
               
148-334
               

               
Cow position:
               
chrX:16324187-16324006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
148-378
               

               
Cow position:
               
chrX:17042466-17042695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
92, 163
               

               
Conread position:
               
149-544
               

               
Cow position:
               
chrX:6265809-6265436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
149-628
               

               
Cow position:
               
chrX:16541899-16541403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
150-528
               

               
Cow position:
               
chrX:1503117-1503474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
150-630
               

               
Cow position:
               
chrX:12980053-12979580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 136
               

               
Conread position:
               
150-630
               

               
Cow position:
               
chrX:46073044-46072574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 112
               

               
Conread position:
               
151-360
               

               
Cow position:
               
chrX:45015364-45015563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
151-545
               

               
Cow position:
               
chrX:23091660-23092034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 131
               

               
Conread position:
               
151-623
               

               
Cow position:
               
chrX:11633457-11633927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 141
               

               
Conread position:
               
152-512
               

               
Cow position:
               
chrX:37574636-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
152-610
               

               
Cow position:
               
chrX:36283125-36283574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 142
               

               
Conread position:
               
152-625
               

               
Cow position:
               
chrX:29602053-29601579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
154-627
               

               
Cow position:
               
chrX:48236593-48237066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
155-320
               

               
Cow position:
               
chrX:25036918-25036751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
155-544
               

               
Cow position:
               
chrX:29120841-29121210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
156-366
               

               
Cow position:
               
chrX:40567383-40567592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
82, 170
               

               
Conread position:
               
157-334
               

               
Cow position:
               
chrX:10123562-10123385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
160-601
               

               
Cow position:
               
chrX:27174782-27175225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 123
               

               
Conread position:
               
161-539
               

               
Cow position:
               
chrX:841947-842316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 86
               

               
Conread position:
               
161-617
               

               
Cow position:
               
chrX:29542430-29541987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 121
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chrX:3579735-3580201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
162-349
               

               
Cow position:
               
chrX:46430068-46429887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
163-371
               

               
Cow position:
               
chrX:28836110-28835910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
163-420
               

               
Cow position:
               
chrX:47453917-47454170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
90, 99
               

               
Conread position:
               
163-538
               

               
Cow position:
               
chrX:47046729-47046357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 208
               

               
Conread position:
               
163-607
               

               
Cow position:
               
chrX:9425951-9425531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
164-603
               

               
Cow position:
               
chrX:45110447-45110878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
79, 110
               

               
Conread position:
               
164-623
               

               
Cow position:
               
chrX:34411631-34412094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
165-370
               

               
Cow position:
               
chrX:46315588-46315383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
165-413
               

               
Cow position:
               
chrX:26285772-26286013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
166-601
               

               
Cow position:
               
chrX:46587611-46588045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 124
               

               
Conread position:
               
167-334
               

               
Cow position:
               
chrX:29770384-29770215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 118
               

               
Conread position:
               
169-413
               

               
Cow position:
               
chrX:17908487-17908256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
169-591
               

               
Cow position:
               
chrX:29545083-29544671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 54
               

               
Conread position:
               
170-614
               

               
Cow position:
               
chrX:36355921-36356342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 8
               

               
Conread position:
               
171-600
               

               
Cow position:
               
chrX:1499468-1499878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-567
               

               
Cow position:
               
chrX:4515467-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
51, 214
               

               
Conread position:
               
172-592
               

               
Cow position:
               
chrX:43780053-43779649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 117
               

               
Conread position:
               
173-360
               

               
Cow position:
               
chrX:4091448-4091632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
173-497
               

               
Cow position:
               
chrX:45148975-45149284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 121
               

               
Conread position:
               
174-497
               

               
Cow position:
               
chrX:47301102-47300787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
65, 118
               

               
Conread position:
               
175-435
               

               
Cow position:
               
chrX:36961438-36961695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 198
               

               
Conread position:
               
175-506
               

               
Cow position:
               
chrX:40809489-40809818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
175-599
               

               
Cow position:
               
chrX:37781315-37780889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
175-625
               

               
Cow position:
               
chrX:33000706-33001144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 81
               

               
Conread position:
               
177-611
               

               
Cow position:
               
chrX:47484467-47484022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
180-382
               

               
Cow position:
               
chrX:37540932-37541130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
180-419
               

               
Cow position:
               
chrX:45874806-45875036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
180-613
               

               
Cow position:
               
chrX:8869601-8869166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
181-539
               

               
Cow position:
               
chrX:43730406-43730066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 73
               

               
Conread position:
               
182-531
               

               
Cow position:
               
chrX:31311835-31312179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
182-539
               

               
Cow position:
               
chrX:23785463-23785806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chrX:44657155-44656779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
183-387
               

               
Cow position:
               
chrX:1505523-1505719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
186-366
               

               
Cow position:
               
chrX:14003829-14003651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
187-537
               

               
Cow position:
               
chrX:36067834-36068177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
328, 53
               

               
Conread position:
               
187-539
               

               
Cow position:
               
chrX:45098924-45099286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 119
               

               
Conread position:
               
188-372
               

               
Cow position:
               
chrX:31256683-31256861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
188-535
               

               
Cow position:
               
chrX:42235718-42235371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
190-593
               

               
Cow position:
               
chrX:32820847-32821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 11
               

               
Conread position:
               
190-594
               

               
Cow position:
               
chrX:7863753-7863362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
191-573
               

               
Cow position:
               
chrX:7336645-7337040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
194-566
               

               
Cow position:
               
chrX:31252239-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 89
               

               
Conread position:
               
194-601
               

               
Cow position:
               
chrX:36060973-36061384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
195-616
               

               
Cow position:
               
chrX:47186498-47186084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
256, 98
               

               
Conread position:
               
196-539
               

               
Cow position:
               
chrX:47166061-47165727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
197-345
               

               
Cow position:
               
chrX:27145447-27145592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
197-421
               

               
Cow position:
               
chrX:29563546-29563329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
173, 91
               

               
Conread position:
               
197-539
               

               
Cow position:
               
chrX:169701-169388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
197-591
               

               
Cow position:
               
chrX:4279290-4278904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
55, 89
               

               
Conread position:
               
197-626
               

               
Cow position:
               
chrX:18485619-18486054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
63, 95
               

               
Conread position:
               
198-607
               

               
Cow position:
               
chrX:15231832-15231428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
199-535
               

               
Cow position:
               
chrX:22387421-22387096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
199-606
               

               
Cow position:
               
chrX:35885903-35885502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
200-426
               

               
Cow position:
               
chrX:37750426-37750209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
200-538
               

               
Cow position:
               
chrX:46433310-46433647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
200-602
               

               
Cow position:
               
chrX:6407376-6407770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 62
               

               
Conread position:
               
201-490
               

               
Cow position:
               
chrX:30263080-30263367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
201-603
               

               
Cow position:
               
chrX:34792482-34792096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
201-614
               

               
Cow position:
               
chrX:4398954-4399356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
202-580
               

               
Cow position:
               
chrX:14955938-14955564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
202-599
               

               
Cow position:
               
chrX:22921143-22921544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
202-614
               

               
Cow position:
               
chrX:25208017-25207623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
203-337
               

               
Cow position:
               
chrX:41271377-41271246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
206-497
               

               
Cow position:
               
chrX:44836828-44837092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
207-413
               

               
Cow position:
               
chrX:10278649-10278843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
207-435
               

               
Cow position:
               
chrX:41992207-41991991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
217, 21
               

               
Conread position:
               
207-575
               

               
Cow position:
               
chrX:14275901-14275549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
209-580
               

               
Cow position:
               
chrX:41068564-41068924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
211-353
               

               
Cow position:
               
chrX:41764478-41764623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
211-421
               

               
Cow position:
               
chrX:36723253-36723049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
212-506
               

               
Cow position:
               
chrX:22454250-22453973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
215-592
               

               
Cow position:
               
chrX:27227966-27228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 159
               

               
Conread position:
               
216-601
               

               
Cow position:
               
chrX:46547033-46546648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
216-614
               

               
Cow position:
               
chrX:35822184-35822569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
216-626
               

               
Cow position:
               
chrX:8917236-8917648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
219-497
               

               
Cow position:
               
chrX:48571146-48570872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
220-603
               

               
Cow position:
               
chrX:20584166-20584539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
223-520
               

               
Cow position:
               
chrX:29680409-29680122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
223-605
               

               
Cow position:
               
chrX:21986441-21986072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
224-539
               

               
Cow position:
               
chrX:9365822-9365516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
268, 21
               

               
Conread position:
               
224-601
               

               
Cow position:
               
chrX:870314-869957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
307, 23
               

               
Conread position:
               
226-607
               

               
Cow position:
               
chrX:43049913-43050302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
227-614
               

               
Cow position:
               
chrX:29723596-29723989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
131, 55
               

               
Conread position:
               
228-539
               

               
Cow position:
               
chrX:11085201-11084905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
291, 54
               

               
Conread position:
               
228-588
               

               
Cow position:
               
chrX:27946200-27945841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
303, 16
               

               
Conread position:
               
228-603
               

               
Cow position:
               
chrX:34313889-34314248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 42
               

               
Conread position:
               
228-611
               

               
Cow position:
               
chrX:47280076-47279701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
185, 54
               

               
Conread position:
               
229-591
               

               
Cow position:
               
chrX:11614556-11614900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
338, 60
               

               
Conread position:
               
232-626
               

               
Cow position:
               
chrX:37955693-37956096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
233-481
               

               
Cow position:
               
chrX:27685108-27685349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
230, 47
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chrX:21566263-21566518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
234-603
               

               
Cow position:
               
chrX:45976782-45977151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 42
               

               
Conread position:
               
235-521
               

               
Cow position:
               
chrX:37986096-37986365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 47
               

               
Conread position:
               
235-540
               

               
Cow position:
               
chrX:7710680-7710379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 138
               

               
Conread position:
               
235-603
               

               
Cow position:
               
chrX:36393484-36393114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
131, 55
               

               
Conread position:
               
236-531
               

               
Cow position:
               
chrX:42873256-42873535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
240, 31
               

               
Conread position:
               
236-615
               

               
Cow position:
               
chrX:20168422-20168793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 5
               

               
Conread position:
               
241-535
               

               
Cow position:
               
chrX:19273854-19273553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
241-539
               

               
Cow position:
               
chrX:616393-616100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
284, 41
               

               
Conread position:
               
241-572
               

               
Cow position:
               
chrX:27301739-27302073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
241-596
               

               
Cow position:
               
chrX:40685462-40685109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 41
               

               
Conread position:
               
241-601
               

               
Cow position:
               
chrX:48262475-48262830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
300, 42
               

               
Conread position:
               
241-603
               

               
Cow position:
               
chrX:34505178-34504826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
241-623
               

               
Cow position:
               
chrX:41027026-41027408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 42
               

               
Conread position:
               
241-627
               

               
Cow position:
               
chrX:5919365-5919739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
238, 41
               

               
Conread position:
               
242-539
               

               
Cow position:
               
chrX:6260289-6259992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
242-595
               

               
Cow position:
               
chrX:45875261-45875609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
280, 40
               

               
Conread position:
               
242-607
               

               
Cow position:
               
chrX:18204593-18204235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
243-537
               

               
Cow position:
               
chrX:38728608-38728890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
245-428
               

               
Cow position:
               
chrX:16055084-16055260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
251-603
               

               
Cow position:
               
chrX:40320284-40320635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
264, 39
               

               
Conread position:
               
255-607
               

               
Cow position:
               
chrX:24331661-24332008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
286, 27
               

               
Conread position:
               
256-531
               

               
Cow position:
               
chrX:5679682-5679422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
242, 10
               

               
Conread position:
               
256-575
               

               
Cow position:
               
chrX:34222592-34222912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
256-600
               

               
Cow position:
               
chrX:26881684-26881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 26
               

               
Conread position:
               
256-623
               

               
Cow position:
               
chrX:34315409-34315773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
195, 26
               

               
Conread position:
               
256-627
               

               
Cow position:
               
chrX:4403198-4403570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
171, 26
               

               
Conread position:
               
258-600
               

               
Cow position:
               
chrX:42927933-42927606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
258-602
               

               
Cow position:
               
chrX:10829317-10829661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
261-631
               

               
Cow position:
               
chrX:17949601-17949240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
247, 22
               

               
Conread position:
               
263-559
               

               
Cow position:
               
chrX:23113165-23113466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
264-521
               

               
Cow position:
               
chrX:46429931-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
270-588
               

               
Cow position:
               
chrX:31515067-31515383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
273-497
               

               
Cow position:
               
chrX:44090673-44090894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
280-508
               

               
Cow position:
               
chrX:19162434-19162214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
172, 11
               

               
Conread position:
               
280-520
               

               
Cow position:
               
chrX:36514993-36514753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
280-538
               

               
Cow position:
               
chrX:11318063-11317811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
177, 89
               

               
Conread position:
               
280-539
               

               
Cow position:
               
chrX:37129174-37129427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
280-601
               

               
Cow position:
               
chrX:33654936-33654618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
282-539
               

               
Cow position:
               
chrX:16348662-16348413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
243, 95
               

               
Conread position:
               
283-370
               

               
Cow position:
               
chrX:25283107-25283020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
283-595
               

               
Cow position:
               
chrX:4296912-4296605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
229, 78
               

               
Conread position:
               
284-542
               

               
Cow position:
               
chrX:29549639-29549391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
284-626
               

               
Cow position:
               
chrX:12095865-12095518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 76
               

               
Conread position:
               
285-542
               

               
Cow position:
               
chrX:29194143-29194391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
285-598
               

               
Cow position:
               
chrX:1466070-1466385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
216, 88
               

               
Conread position:
               
285-601
               

               
Cow position:
               
chrX:10516165-10516479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 37
               

               
Conread position:
               
285-602
               

               
Cow position:
               
chrX:29050156-29050468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 96
               

               
Conread position:
               
285-602
               

               
Cow position:
               
chrX:34837145-34836846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
285-603
               

               
Cow position:
               
chrX:918818-918502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
285-603
               

               
Cow position:
               
chrX:38560466-38560777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
285-623
               

               
Cow position:
               
chrX:46291047-46291388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
185, 67
               

               
Conread position:
               
286-576
               

               
Cow position:
               
chrX:40283036-40283323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
226, 97
               

               
Conread position:
               
286-603
               

               
Cow position:
               
chrX:42855365-42855690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
287-539
               

               
Cow position:
               
chrX:41271087-41270828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
287-601
               

               
Cow position:
               
chrX:48071072-48071387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
244, 75
               

               
Conread position:
               
287-614
               

               
Cow position:
               
chrX:13121841-13122182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
287-614
               

               
Cow position:
               
chrX:21327817-21328151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 140
               

               
Conread position:
               
289-601
               

               
Cow position:
               
chrX:35590844-35590533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
290-535
               

               
Cow position:
               
chrX:23562549-23562786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
290-610
               

               
Cow position:
               
chrX:40680525-40680848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 100
               

               
Conread position:
               
290-614
               

               
Cow position:
               
chrX:41870978-41871294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
290-625
               

               
Cow position:
               
chrX:20882023-20881711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
306, 48
               

               
Conread position:
               
290-626
               

               
Cow position:
               
chrX:33800237-33800574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
211, 66
               

               
Conread position:
               
291-603
               

               
Cow position:
               
chrX:4109108-4109412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
162, 22
               

               
Conread position:
               
291-614
               

               
Cow position:
               
chrX:38321472-38321146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
293-539
               

               
Cow position:
               
chrX:16575040-16575270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
293-610
               

               
Cow position:
               
chrX:27261105-27261424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
293-614
               

               
Cow position:
               
chrX:22115401-22115075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
5, 72
               

               
Conread position:
               
294-614
               

               
Cow position:
               
chrX:6559527-6559216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
158, 71
               

               
Conread position:
               
294-634
               

               
Cow position:
               
chrX:22283750-22284097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
295-598
               

               
Cow position:
               
chrX:44796302-44796607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
295-600
               

               
Cow position:
               
chrX:47345253-47345554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
296-614
               

               
Cow position:
               
chrX:13923792-13924098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
161, 53
               

               
Conread position:
               
296-620
               

               
Cow position:
               
chrX:39220000-39220331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
224, 35
               

               
Conread position:
               
297-542
               

               
Cow position:
               
chrX:45884054-45883810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
297-603
               

               
Cow position:
               
chrX:36866092-36866400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
92, 68
               

               
Conread position:
               
298-585
               

               
Cow position:
               
chrX:48473829-48474118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
298-601
               

               
Cow position:
               
chrX:45254661-45254357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
298-601
               

               
Cow position:
               
chrX:48532236-48532539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
298-603
               

               
Cow position:
               
chrX:4153113-4152817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
73, 92
               

               
Conread position:
               
298-614
               

               
Cow position:
               
chrX:40336820-40337151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 161
               

               
Conread position:
               
298-628
               

               
Cow position:
               
chrX:47013481-47013148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
299-537
               

               
Cow position:
               
chrX:4746318-4746090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
302-592
               

               
Cow position:
               
chrX:38208617-38208338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
303-601
               

               
Cow position:
               
chrX:48003774-48004071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
229, 62
               

               
Conread position:
               
303-622
               

               
Cow position:
               
chrX:1088209-1087902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
304-581
               

               
Cow position:
               
chrX:19965474-19965190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
304-603
               

               
Cow position:
               
chrX:25036915-25037219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
228, 77
               

               
Conread position:
               
305-531
               

               
Cow position:
               
chrX:22915107-22914892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
308-630
               

               
Cow position:
               
chrX:27459788-27460121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 57
               

               
Conread position:
               
310-542
               

               
Cow position:
               
chrX:15820531-15820755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
311-581
               

               
Cow position:
               
chrX:2675022-2674752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
312-601
               

               
Cow position:
               
chrX:12437334-12437058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
313-601
               

               
Cow position:
               
chrX:13146918-13147209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
206, 48
               

               
Conread position:
               
313-613
               

               
Cow position:
               
chrX:296332-296629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
316-603
               

               
Cow position:
               
chrX:27511367-27511643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
316-622
               

               
Cow position:
               
chrX:39352720-39353018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
323-607
               

               
Cow position:
               
chrX:44339377-44339089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
207, 67
               

               
Conread position:
               
323-628
               

               
Cow position:
               
chrX:35985765-35986068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
203, 42
               

               
Conread position:
               
326-537
               

               
Cow position:
               
chrX:31627031-31626823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
327-520
               

               
Cow position:
               
chrX:19943286-19943097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
327-600
               

               
Cow position:
               
chrX:22393035-22392764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
329-595
               

               
Cow position:
               
chrX:19469553-19469296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
329-603
               

               
Cow position:
               
chrX:36367989-36367707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
98, 52
               

               
Conread position:
               
329-612
               

               
Cow position:
               
chrX:30282-30567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
330-592
               

               
Cow position:
               
chrX:1360040-1360298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
330-609
               

               
Cow position:
               
chrX:36392234-36391954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
331-595
               

               
Cow position:
               
chrX:4645957-4645695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
206, 43
               

               
Conread position:
               
331-626
               

               
Cow position:
               
chrX:27306407-27306689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
332-590
               

               
Cow position:
               
chrX:48121243-48120992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
332-635
               

               
Cow position:
               
chrX:34540635-34540942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
183, 33
               

               
Conread position:
               
334-538
               

               
Cow position:
               
chrX:29553243-29553441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
336-603
               

               
Cow position:
               
chrX:43150380-43150658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
339-593
               

               
Cow position:
               
chrX:47061357-47061603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
339-603
               

               
Cow position:
               
chrX:6599821-6599547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
202, 31
               

               
Conread position:
               
339-603
               

               
Cow position:
               
chrX:42893880-42894149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
339-614
               

               
Cow position:
               
chrX:11326137-11325870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
339-614
               

               
Cow position:
               
chrX:19394515-19394793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
155, 28
               

               
Conread position:
               
339-614
               

               
Cow position:
               
chrX:48558710-48558984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
340-572
               

               
Cow position:
               
chrX:23188813-23188593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
341-603
               

               
Cow position:
               
chrX:17956660-17956916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
179, 32
               

               
Conread position:
               
342-577
               

               
Cow position:
               
chrX:44660622-44660387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
342-601
               

               
Cow position:
               
chrX:44202081-44201820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
189, 14
               

               
Conread position:
               
342-601
               

               
Cow position:
               
chrX:44859897-44859637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
199, 21
               

               
Conread position:
               
342-601
               

               
Cow position:
               
chrX:46793780-46793525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
342-628
               

               
Cow position:
               
chrX:4289405-4289687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
343-639
               

               
Cow position:
               
chrX:35431277-35430975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
344-614
               

               
Cow position:
               
chrX:41941594-41941861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
345-592
               

               
Cow position:
               
chrX:30840508-30840757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
349-539
               

               
Cow position:
               
chrX:20743575-20743763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
180, 32
               

               
Conread position:
               
349-559
               

               
Cow position:
               
chrX:32318276-32318484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
356-531
               

               
Cow position:
               
chrX:25411887-25412055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
357-628
               

               
Cow position:
               
chrX:32574293-32574575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
359-600
               

               
Cow position:
               
chrX:27145582-27145823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
360-603
               

               
Cow position:
               
chrX:11763022-11762784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
360-607
               

               
Cow position:
               
chrX:35275969-35276218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
181, 14
               

               
Conread position:
               
360-635
               

               
Cow position:
               
chrX:2935936-2936215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
364-629
               

               
Cow position:
               
chrX:12972667-12972931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
366-577
               

               
Cow position:
               
chrX:11859548-11859335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
369-614
               

               
Cow position:
               
chrX:42432526-42432272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
370-600
               

               
Cow position:
               
chrX:11653755-11653991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
370-606
               

               
Cow position:
               
chrX:32208831-32208597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
372-601
               

               
Cow position:
               
chrX:29478717-29478947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
169, 18
               

               
Conread position:
               
373-614
               

               
Cow position:
               
chrX:20957231-20957478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 23
               

               
Conread position:
               
373-614
               

               
Cow position:
               
chrX:39290353-39290594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
161, 16
               

               
Conread position:
               
374-630
               

               
Cow position:
               
chrX:36109626-36109362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 238
               

               
Conread position:
               
375-601
               

               
Cow position:
               
chrX:4466963-4467176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
375-614
               

               
Cow position:
               
chrX:26205452-26205219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
234, 15
               

               
Conread position:
               
376-601
               

               
Cow position:
               
chrX:26979792-26979566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
377-603
               

               
Cow position:
               
chrX:16984639-16984862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
377-609
               

               
Cow position:
               
chrX:17966337-17966557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
377-625
               

               
Cow position:
               
chrX:42479831-42480075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
194, 12
               

               
Conread position:
               
379-615
               

               
Cow position:
               
chrX:42836178-42836417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 224
               

               
Conread position:
               
388-614
               

               
Cow position:
               
chrX:24633691-24633927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
55, 198
               

               
Conread position:
               
388-628
               

               
Cow position:
               
chrX:26843262-26843014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
389-631
               

               
Cow position:
               
chrX:27668950-27668707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 118
               

               
Conread position:
               
390-630
               

               
Cow position:
               
chrX:25049273-25049027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
391-593
               

               
Cow position:
               
chrX:34420744-34420953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
391-600
               

               
Cow position:
               
chrX:1122533-1122323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
391-600
               

               
Cow position:
               
chrX:42450004-42449789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
391-603
               

               
Cow position:
               
chrX:17524374-17524156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
391-606
               

               
Cow position:
               
chrX:19018821-19018598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
391-624
               

               
Cow position:
               
chrX:16836276-16836046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
225, 56
               

               
Conread position:
               
391-628
               

               
Cow position:
               
chrX:4328173-4327930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
150, 113
               

               
Conread position:
               
391-631
               

               
Cow position:
               
chrX:4559749-4559986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
391-633
               

               
Cow position:
               
chrX:39180223-39179970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 91
               

               
Conread position:
               
391-634
               

               
Cow position:
               
chrX:24170719-24170464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 86
               

               
Conread position:
               
392-614
               

               
Cow position:
               
chrX:35392283-35392066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
211, 55
               

               
Conread position:
               
393-599
               

               
Cow position:
               
chrX:29467766-29467559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
393-602
               

               
Cow position:
               
chrX:38967900-38968121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
395-608
               

               
Cow position:
               
chrX:29451535-29451313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
396-544
               

               
Cow position:
               
chrX:36313991-36313843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
396-600
               

               
Cow position:
               
chrX:38301824-38302038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 111
               

               
Conread position:
               
396-603
               

               
Cow position:
               
chrX:3806697-3806906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
139, 127
               

               
Conread position:
               
396-603
               

               
Cow position:
               
chrX:32910119-32910324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
396-614
               

               
Cow position:
               
chrX:17292970-17293194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
396-631
               

               
Cow position:
               
chrX:24336062-24335819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
397-600
               

               
Cow position:
               
chrX:27075035-27074827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
397-600
               

               
Cow position:
               
chrX:35383020-35382818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
397-607
               

               
Cow position:
               
chrX:43008625-43008842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
397-614
               

               
Cow position:
               
chrX:20583682-20583898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
129, 176
               

               
Conread position:
               
397-615
               

               
Cow position:
               
chrX:31479987-31480204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
398-603
               

               
Cow position:
               
chrX:47854998-47855204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 8
               

               
Conread position:
               
398-604
               

               
Cow position:
               
chrX:19761771-19761977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-627
               

               
Cow position:
               
chrX:20345470-20345702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
400-592
               

               
Cow position:
               
chrX:41810149-41809959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
400-603
               

               
Cow position:
               
chrX:28940261-28940471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
400-608
               

               
Cow position:
               
chrX:5026275-5026482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
169, 123
               

               
Conread position:
               
400-634
               

               
Cow position:
               
chrX:32877356-32877120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
118, 175
               

               
Conread position:
               
401-601
               

               
Cow position:
               
chrX:28067870-28068076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
401-614
               

               
Cow position:
               
chrX:35285193-35285412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
403-606
               

               
Cow position:
               
chrX:34398762-34398553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
406-626
               

               
Cow position:
               
chrX:44040206-44040427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
409-601
               

               
Cow position:
               
chrX:2314591-2314393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
409-614
               

               
Cow position:
               
chrX:23359083-23358878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
120, 38
               

               
Conread position:
               
409-630
               

               
Cow position:
               
chrX:32866903-32867124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
410-628
               

               
Cow position:
               
chrX:44995527-44995752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
410-632
               

               
Cow position:
               
chrX:46909844-46910062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
410-634
               

               
Cow position:
               
chrX:27270404-27270625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
68, 148
               

               
Conread position:
               
411-603
               

               
Cow position:
               
chrX:2551121-2551304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
411-614
               

               
Cow position:
               
chrX:8642076-8642282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
130, 59
               

               
Conread position:
               
411-614
               

               
Cow position:
               
chrX:37749953-37749755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
198, 40
               

               
Conread position:
               
411-624
               

               
Cow position:
               
chrX:4091954-4092170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
129, 166
               

               
Conread position:
               
414-611
               

               
Cow position:
               
chrX:44870400-44870201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
416-603
               

               
Cow position:
               
chrX:48822307-48822115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
416-614
               

               
Cow position:
               
chrX:34991399-34991599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
416-623
               

               
Cow position:
               
chrX:35681603-35681816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
127, 6
               

               
Conread position:
               
416-628
               

               
Cow position:
               
chrX:17498357-17498578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
416-635
               

               
Cow position:
               
chrX:27416131-27416355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
419-595
               

               
Cow position:
               
chrX:44123293-44123468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
419-614
               

               
Cow position:
               
chrX:10415215-10415014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
421-602
               

               
Cow position:
               
chrX:41858842-41858658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 28
               

               
Conread position:
               
423-603
               

               
Cow position:
               
chrX:23471824-23471641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
431-603
               

               
Cow position:
               
chrX:41166775-41166602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
446-607
               

               
Cow position:
               
chrX:13459065-13458908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
448-625
               

               
Cow position:
               
chrX:11674176-11674362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
449-600
               

               
Cow position:
               
chrX:8326972-8327129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
449-601
               

               
Cow position:
               
chrX:37867500-37867658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
449-603
               

               
Cow position:
               
chrX:37867321-37867481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
449-624
               

               
Cow position:
               
chrX:32747800-32747968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
450-566
               

               
Cow position:
               
chrX:40543452-40543338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
450-592
               

               
Cow position:
               
chrX:10237844-10237697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
450-595
               

               
Cow position:
               
chrX:46533236-46533085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
450-599
               

               
Cow position:
               
chrX:37752037-37751888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 93
               

               
Conread position:
               
450-599
               

               
Cow position:
               
chrX:45759740-45759892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
450-601
               

               
Cow position:
               
chrX:1960356-1960200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
450-601
               

               
Cow position:
               
chrX:4169962-4169803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
450-601
               

               
Cow position:
               
chrX:8759695-8759848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
450-601
               

               
Cow position:
               
chrX:42461549-42461402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
450-601
               

               
Cow position:
               
chrX:43059183-43059031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
450-603
               

               
Cow position:
               
chrX:5097730-5097567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 143
               

               
Conread position:
               
450-603
               

               
Cow position:
               
chrX:16556148-16555996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
450-603
               

               
Cow position:
               
chrX:23335907-23335748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
450-603
               

               
Cow position:
               
chrX:25925573-25925429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
450-603
               

               
Cow position:
               
chrX:42760321-42760480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
450-603
               

               
Cow position:
               
chrX:42875281-42875436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
450-607
               

               
Cow position:
               
chrX:11454255-11454406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
450-607
               

               
Cow position:
               
chrX:11589298-11589136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:1101626-1101789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 73
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:5915257-5915429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:9451414-9451579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:14925341-14925512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:15100052-15100219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:28106916-28107084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
450-614
               

               
Cow position:
               
chrX:28850792-28850956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
450-619
               

               
Cow position:
               
chrX:48574288-48574110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
450-626
               

               
Cow position:
               
chrX:35409821-35410000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
450-627
               

               
Cow position:
               
chrX:41010967-41011141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
450-631
               

               
Cow position:
               
chrX:12819-12995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
450-631
               

               
Cow position:
               
chrX:26882011-26881826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 158
               

               
Conread position:
               
450-632
               

               
Cow position:
               
chrX:1938083-1938269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
450-637
               

               
Cow position:
               
chrX:19717589-19717772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
174, 62
               

               
Conread position:
               
451-592
               

               
Cow position:
               
chrX:11813143-11813290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
451-592
               

               
Cow position:
               
chrX:39094252-39094117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
451-600
               

               
Cow position:
               
chrX:3494975-3494826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
451-600
               

               
Cow position:
               
chrX:34270631-34270785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
451-614
               

               
Cow position:
               
chrX:10278940-10279113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 135
               

               
Conread position:
               
451-614
               

               
Cow position:
               
chrX:16763855-16763692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
451-614
               

               
Cow position:
               
chrX:16801193-16801028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
451-614
               

               
Cow position:
               
chrX:30789461-30789290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
451-615
               

               
Cow position:
               
chrX:33678403-33678231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
451-618
               

               
Cow position:
               
chrX:6634414-6634590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
451-628
               

               
Cow position:
               
chrX:19000196-19000377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
89, 160
               

               
Conread position:
               
451-630
               

               
Cow position:
               
chrX:47100527-47100340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
451-632
               

               
Cow position:
               
chrX:14951283-14951100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 161
               

               
Conread position:
               
451-634
               

               
Cow position:
               
chrX:51831-51645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
452-596
               

               
Cow position:
               
chrX:11529414-11529558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
452-598
               

               
Cow position:
               
chrX:25420402-25420546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 72
               

               
Conread position:
               
452-599
               

               
Cow position:
               
chrX:40556388-40556240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
452-601
               

               
Cow position:
               
chrX:46068688-46068539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
452-603
               

               
Cow position:
               
chrX:23497620-23497470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
452-603
               

               
Cow position:
               
chrX:39642551-39642401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
452-603
               

               
Cow position:
               
chrX:41215393-41215550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
452-607
               

               
Cow position:
               
chrX:41454883-41454722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
452-608
               

               
Cow position:
               
chrX:10252129-10251970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
452-609
               

               
Cow position:
               
chrX:6480525-6480361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
452-614
               

               
Cow position:
               
chrX:31983514-31983338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
452-614
               

               
Cow position:
               
chrX:42086898-42087067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
452-626
               

               
Cow position:
               
chrX:41199295-41199471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 156
               

               
Conread position:
               
453-614
               

               
Cow position:
               
chrX:19203274-19203106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
453-614
               

               
Cow position:
               
chrX:29682039-29681879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
453-632
               

               
Cow position:
               
chrX:16770136-16770317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 169
               

               
Conread position:
               
453-635
               

               
Cow position:
               
chrX:34194009-34193825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 170
               

               
Conread position:
               
454-603
               

               
Cow position:
               
chrX:31279851-31279700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
454-650
               

               
Cow position:
               
chrX:42216556-42216363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
455-603
               

               
Cow position:
               
chrX:35029852-35029709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
456-585
               

               
Cow position:
               
chrX:25049026-25048893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
456-600
               

               
Cow position:
               
chrX:231943-231802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
456-600
               

               
Cow position:
               
chrX:4486949-4486800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
456-601
               

               
Cow position:
               
chrX:1571514-1571371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
456-603
               

               
Cow position:
               
chrX:17525792-17525650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
456-603
               

               
Cow position:
               
chrX:42506874-42506719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
456-627
               

               
Cow position:
               
chrX:6389156-6389330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
456-627
               

               
Cow position:
               
chrX:14135753-14135929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
457-601
               

               
Cow position:
               
chrX:11670762-11670912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
457-603
               

               
Cow position:
               
chrX:4750256-4750111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
457-607
               

               
Cow position:
               
chrX:34108282-34108127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
457-614
               

               
Cow position:
               
chrX:30958806-30958966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
458-603
               

               
Cow position:
               
chrX:17744700-17744848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
458-625
               

               
Cow position:
               
chrX:26720605-26720441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
459-603
               

               
Cow position:
               
chrX:5487861-5487721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
459-603
               

               
Cow position:
               
chrX:11602407-11602260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 118
               

               
Conread position:
               
459-615
               

               
Cow position:
               
chrX:37717800-37717961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
460-591
               

               
Cow position:
               
chrX:30824068-30824200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
460-598
               

               
Cow position:
               
chrX:27415501-27415366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
461-601
               

               
Cow position:
               
chrX:35509599-35509455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
461-603
               

               
Cow position:
               
chrX:17929081-17929225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
463-600
               

               
Cow position:
               
chrX:43028314-43028453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
465-603
               

               
Cow position:
               
chrX:35390675-35390536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
465-603
               

               
Cow position:
               
chrX:37176958-37177094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
466-601
               

               
Cow position:
               
chrX:19356548-19356689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
467-601
               

               
Cow position:
               
chrX:1996366-1996226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
470-614
               

               
Cow position:
               
chrX:876758-876609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
474-600
               

               
Cow position:
               
chrX:10479842-10479974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
474-623
               

               
Cow position:
               
chrX:42165521-42165372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
477-614
               

               
Cow position:
               
chrX:42159037-42159179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 130
               
Show alignments to all cow chromosomes.