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Cow genome map

           
Conread name:
           
Spl1-SPL010028D01
        

               
Conread position:
               
278-590
               

               
Cow position:
               
chr1:22448470-22448784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
278-590
               

               
Cow position:
               
chr1:32244276-32244602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
279-539
               

               
Cow position:
               
chr1:38544359-38544607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
280-594
               

               
Cow position:
               
chr1:70028691-70028376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
315-590
               

               
Cow position:
               
chr1:68845412-68845683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
322-486
               

               
Cow position:
               
chr1:45670702-45670544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 5
               

               
Conread position:
               
322-562
               

               
Cow position:
               
chr1:89381345-89381101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
322-576
               

               
Cow position:
               
chr1:73682172-73682420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
322-589
               

               
Cow position:
               
chr1:16767018-16767281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
120, 5
               

               
Conread position:
               
322-589
               

               
Cow position:
               
chr1:89509851-89510129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
322-590
               

               
Cow position:
               
chr1:4291234-4290961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 5
               

               
Conread position:
               
322-590
               

               
Cow position:
               
chr1:64678765-64678500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
322-590
               

               
Cow position:
               
chr1:80988417-80988149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 5
               

               
Conread position:
               
322-590
               

               
Cow position:
               
chr1:81290576-81290321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
325-590
               

               
Cow position:
               
chr1:94226487-94226745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
328-589
               

               
Cow position:
               
chr1:21460937-21460671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
332-588
               

               
Cow position:
               
chr1:10655542-10655282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
334-588
               

               
Cow position:
               
chr1:57635519-57635271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
337-542
               

               
Cow position:
               
chr1:96365718-96365520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 8
               

               
Conread position:
               
337-590
               

               
Cow position:
               
chr1:41697112-41696857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
337-590
               

               
Cow position:
               
chr1:43340560-43340820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
337-590
               

               
Cow position:
               
chr1:75383034-75382794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
204, 8
               

               
Conread position:
               
337-590
               

               
Cow position:
               
chr1:100450118-100450382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
338-582
               

               
Cow position:
               
chr1:71228148-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
338-590
               

               
Cow position:
               
chr1:61351198-61350950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
203, 82
               

               
Conread position:
               
340-553
               

               
Cow position:
               
chr1:25387105-25386887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
340-590
               

               
Cow position:
               
chr1:20205082-20204829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 93
               

               
Conread position:
               
341-542
               

               
Cow position:
               
chr1:86682509-86682712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 174
               

               
Conread position:
               
341-584
               

               
Cow position:
               
chr1:81868678-81868917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
341-588
               

               
Cow position:
               
chr1:45019750-45019999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
341-588
               

               
Cow position:
               
chr1:48105380-48105629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
341-590
               

               
Cow position:
               
chr1:95176990-95176738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 124
               

               
Conread position:
               
341-590
               

               
Cow position:
               
chr1:101551517-101551260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
342-590
               

               
Cow position:
               
chr1:19885434-19885187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
345-580
               

               
Cow position:
               
chr1:24445578-24445815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
347-504
               

               
Cow position:
               
chr1:6826251-6826401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
347-505
               

               
Cow position:
               
chr1:82880692-82880531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
347-565
               

               
Cow position:
               
chr1:77880686-77880903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
347-577
               

               
Cow position:
               
chr1:86579010-86578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
70, 177
               

               
Conread position:
               
347-581
               

               
Cow position:
               
chr1:9166730-9166961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
162, 12
               

               
Conread position:
               
347-588
               

               
Cow position:
               
chr1:35170382-35170141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
347-589
               

               
Cow position:
               
chr1:40192651-40192874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:18936789-18937031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
196, 46
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:24534209-24534440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
97, 66
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:44125590-44125837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 174
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:50930931-50931166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:51531799-51531576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:53458743-53458509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 85
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:61741922-61742164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
100, 74
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:68817751-68817996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:68863079-68862838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:71253508-71253752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:76019648-76019879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:81913106-81913349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
101, 116
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr1:102785002-102784763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 25
               

               
Conread position:
               
348-505
               

               
Cow position:
               
chr1:43822447-43822287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
348-542
               

               
Cow position:
               
chr1:30047554-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
348-542
               

               
Cow position:
               
chr1:41115671-41115864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
348-587
               

               
Cow position:
               
chr1:82337732-82337979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
76, 166
               

               
Conread position:
               
348-589
               

               
Cow position:
               
chr1:21835979-21835752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
348-590
               

               
Cow position:
               
chr1:26201280-26201023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 175
               

               
Conread position:
               
348-590
               

               
Cow position:
               
chr1:36875074-36874818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 155
               

               
Conread position:
               
348-590
               

               
Cow position:
               
chr1:43389004-43389245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
348-590
               

               
Cow position:
               
chr1:74955973-74956221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 75
               

               
Conread position:
               
348-590
               

               
Cow position:
               
chr1:90641081-90640827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
349-482
               

               
Cow position:
               
chr1:186231-186363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
349-515
               

               
Cow position:
               
chr1:43311729-43311898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 162
               

               
Conread position:
               
349-531
               

               
Cow position:
               
chr1:29451964-29451780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
99, 84
               

               
Conread position:
               
349-538
               

               
Cow position:
               
chr1:23186755-23186942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 78
               

               
Conread position:
               
349-577
               

               
Cow position:
               
chr1:182847-182623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
200, 42
               

               
Conread position:
               
349-578
               

               
Cow position:
               
chr1:63530601-63530395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
349-582
               

               
Cow position:
               
chr1:91874869-91875100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
98, 56
               

               
Conread position:
               
349-585
               

               
Cow position:
               
chr1:83072484-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
349-586
               

               
Cow position:
               
chr1:102647230-102647462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
94, 72
               

               
Conread position:
               
349-587
               

               
Cow position:
               
chr1:87072739-87072510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
349-588
               

               
Cow position:
               
chr1:53622999-53622768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:27145608-27145851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:34771460-34771701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:43505572-43505326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 165
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:45288828-45289071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 70
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:49433221-49433462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
153, 63
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:53308346-53308590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 87
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:55163962-55163725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
100, 114
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:60707446-60707206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
152, 15
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:61735392-61735636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
152, 68
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:72141618-72141367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:74822490-74822254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:78857286-78857520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
208, 68
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:81568985-81569232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 163
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:83582890-83583135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:89350008-89349780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 163
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:95100997-95100764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:95654670-95654913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
100, 67
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:98311113-98310864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 71
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:99642326-99642567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:100800396-100800158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
349-590
               

               
Cow position:
               
chr1:102266225-102266464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 72
               

               
Conread position:
               
349-594
               

               
Cow position:
               
chr1:5135667-5135893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
349-594
               

               
Cow position:
               
chr1:39418068-39418320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 211
               

               
Conread position:
               
350-470
               

               
Cow position:
               
chr1:43311989-43312105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
350-478
               

               
Cow position:
               
chr1:98576089-98575961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
98, 54
               

               
Conread position:
               
350-487
               

               
Cow position:
               
chr1:71796268-71796409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
350-499
               

               
Cow position:
               
chr1:22823947-22823799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
350-500
               

               
Cow position:
               
chr1:48769844-48769694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
350-503
               

               
Cow position:
               
chr1:87936939-87936788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 6
               

               
Conread position:
               
350-504
               

               
Cow position:
               
chr1:8984640-8984797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
350-505
               

               
Cow position:
               
chr1:45285705-45285545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 119
               

               
Conread position:
               
350-505
               

               
Cow position:
               
chr1:78794189-78794338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
350-505
               

               
Cow position:
               
chr1:98511969-98511815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
350-506
               

               
Cow position:
               
chr1:56225827-56225679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
350-512
               

               
Cow position:
               
chr1:47790620-47790785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 143
               

               
Conread position:
               
350-517
               

               
Cow position:
               
chr1:72813658-72813488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
350-527
               

               
Cow position:
               
chr1:5023720-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
350-528
               

               
Cow position:
               
chr1:64302202-64302383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
350-530
               

               
Cow position:
               
chr1:64572557-64572376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
350-531
               

               
Cow position:
               
chr1:85550036-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
350-531
               

               
Cow position:
               
chr1:89448942-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 162
               

               
Conread position:
               
350-531
               

               
Cow position:
               
chr1:92996849-92997037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 169
               

               
Conread position:
               
350-531
               

               
Cow position:
               
chr1:93228567-93228387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
350-536
               

               
Cow position:
               
chr1:87440510-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
350-537
               

               
Cow position:
               
chr1:8128926-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chr1:87197862-87197680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 97
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chr1:91023425-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
350-540
               

               
Cow position:
               
chr1:98413814-98413619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 124
               

               
Conread position:
               
350-541
               

               
Cow position:
               
chr1:85647738-85647930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:7609662-7609465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 164
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:31272400-31272590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:53370125-53369929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:57420689-57420877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:86110695-86110880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:88913362-88913168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chr1:96081522-96081335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
152, 63
               

               
Conread position:
               
350-544
               

               
Cow position:
               
chr1:23512617-23512806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
350-549
               

               
Cow position:
               
chr1:9470356-9470554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
350-549
               

               
Cow position:
               
chr1:22192811-22192607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
350-549
               

               
Cow position:
               
chr1:93554878-93554687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
350-552
               

               
Cow position:
               
chr1:72105448-72105255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
350-552
               

               
Cow position:
               
chr1:97696789-97696581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
350-553
               

               
Cow position:
               
chr1:101866455-101866657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
350-553
               

               
Cow position:
               
chr1:101946672-101946867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
350-554
               

               
Cow position:
               
chr1:4032674-4032464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
350-554
               

               
Cow position:
               
chr1:72068793-72068999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 163
               

               
Conread position:
               
350-555
               

               
Cow position:
               
chr1:60281415-60281208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
350-556
               

               
Cow position:
               
chr1:55428914-55429119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
350-556
               

               
Cow position:
               
chr1:87095172-87095398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
350-558
               

               
Cow position:
               
chr1:77683394-77683192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
350-562
               

               
Cow position:
               
chr1:22525920-22525711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
350-565
               

               
Cow position:
               
chr1:20544339-20544119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
99, 24
               

               
Conread position:
               
350-565
               

               
Cow position:
               
chr1:24876304-24876093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
350-567
               

               
Cow position:
               
chr1:90621464-90621689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 163
               

               
Conread position:
               
350-570
               

               
Cow position:
               
chr1:77620588-77620370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
350-572
               

               
Cow position:
               
chr1:20667700-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
93, 71
               

               
Conread position:
               
350-573
               

               
Cow position:
               
chr1:65904956-65905188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
350-577
               

               
Cow position:
               
chr1:99039313-99039537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
115, 79
               

               
Conread position:
               
350-578
               

               
Cow position:
               
chr1:41056720-41056498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
350-578
               

               
Cow position:
               
chr1:42398149-42398382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
350-578
               

               
Cow position:
               
chr1:92369780-92369543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 165
               

               
Conread position:
               
350-581
               

               
Cow position:
               
chr1:33206839-33207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
191, 33
               

               
Conread position:
               
350-581
               

               
Cow position:
               
chr1:54156692-54156929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
350-581
               

               
Cow position:
               
chr1:65318617-65318393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
160, 67
               

               
Conread position:
               
350-582
               

               
Cow position:
               
chr1:8657-8433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
93, 67
               

               
Conread position:
               
350-582
               

               
Cow position:
               
chr1:12464622-12464853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
94, 72
               

               
Conread position:
               
350-584
               

               
Cow position:
               
chr1:724782-724543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
350-584
               

               
Cow position:
               
chr1:33331049-33331280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
350-585
               

               
Cow position:
               
chr1:79278404-79278638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
350-585
               

               
Cow position:
               
chr1:97779034-97778802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:16855657-16855884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:31390547-31390778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:43447787-43448016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:71045797-71045561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:83083050-83082808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:93110574-93110815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
350-586
               

               
Cow position:
               
chr1:98360354-98360602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:7350590-7350344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 165
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:9534207-9533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:25383710-25383468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:63596012-63596254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:73960745-73960507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:81563787-81563538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 168
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:82443412-82443651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 71
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr1:91066109-91066343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
94, 58
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:6788241-6788485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:20000706-20000944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 162
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:20099409-20099168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
170, 21
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:45535749-45535506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:51654466-51654215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:52039680-52039441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
65, 164
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:52052675-52052899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 158
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:54199337-54199579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 73
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:57637399-57637177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 63
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:68951669-68951436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:75142039-75141811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:89497998-89497770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:92963437-92963203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:99609411-99609170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr1:99807674-99807919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 166
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:4374295-4374535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:11729217-11728981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:13637621-13637867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 67
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:19482039-19482269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
109, 77
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:31499666-31499431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:31765332-31765593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:36998227-36997996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
160, 43
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:37321956-37322201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 163
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:52995066-52994827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:54478371-54478128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
74, 164
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:63138883-63138642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
98, 72
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:66430333-66430100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:68855207-68854978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:72034882-72035126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:81355661-81355900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 141
               

               
Conread position:
               
350-589
               

               
Cow position:
               
chr1:93528739-93528494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:196963-197205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
83, 119
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:635236-634994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:874696-874446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:1185771-1185542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:1956291-1956525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:1981071-1981307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 82
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:6304822-6305066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 69
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:7971454-7971233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:10633088-10632856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:10942052-10942289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 113
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:10964334-10964097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 113
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:15547513-15547271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
107, 53
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:19466095-19465865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:22827199-22826972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:24235477-24235718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:24597697-24597455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:25281615-25281873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
94, 178
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:26729760-26729530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:28563524-28563766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:31348395-31348638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:31413930-31414156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:34159877-34159634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:34856586-34856826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:35162452-35162206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:37309477-37309708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:39068914-39069148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:42360328-42360069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:42555308-42555072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:42873908-42874144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:42968277-42968515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:44155292-44155065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:44507015-44506770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 69
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:45555408-45555166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
94, 63
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:46218615-46218386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:46693612-46693854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
160, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:47233436-47233672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 160
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:48444152-48444380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 59
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:48730790-48731026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:51968504-51968273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:51981264-51981030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
193, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:52435314-52435073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:52487938-52488160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
154, 66
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:52496813-52496584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 39
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:52753118-52753363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:54206771-54207016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
5, 165
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:54258609-54258370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 197
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:55146841-55146604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:55705204-55705451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
66, 163
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:56477634-56477397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:56635140-56634901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:60032557-60032796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:61723977-61724222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
94, 56
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:62036844-62036603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
150, 78
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:63390725-63390971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:63434764-63435007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:68276458-68276209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:70422346-70422103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:71078918-71079154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 65
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:71119563-71119314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:72103892-72103649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:75744904-75744663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:76470695-76470462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:77720206-77720429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:78791262-78791503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 161
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:78809918-78809686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 58
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:79165040-79165288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:79591140-79590903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
151, 76
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:79844507-79844271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:80336207-80336444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
159, 71
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:80900162-80899910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:81228292-81228537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 201
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:81613431-81613188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:82884351-82884587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
97, 72
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:84906021-84906265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:85162505-85162745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
203, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:85867631-85867396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:89485622-89485388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:89741958-89742209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
181, 72
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:90864251-90864497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 79
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:90976046-90976280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:91800557-91800803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 73
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:91816729-91816971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:94261578-94261350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:95017487-95017713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:95035310-95035553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:97611618-97611850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:97755562-97755324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
99, 163
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:98461328-98461093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:99136388-99136628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:100400150-100400399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:100770710-100770936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:101634754-101634504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:101867392-101867158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr1:102349705-102349955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 6
               

               
Conread position:
               
350-591
               

               
Cow position:
               
chr1:90868399-90868634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 69
               

               
Conread position:
               
350-591
               

               
Cow position:
               
chr1:93810471-93810243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
350-593
               

               
Cow position:
               
chr1:3034957-3035193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
350-594
               

               
Cow position:
               
chr1:38277986-38278247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 86
               

               
Conread position:
               
350-594
               

               
Cow position:
               
chr1:43872277-43872536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
56, 171
               

               
Conread position:
               
350-594
               

               
Cow position:
               
chr1:70026303-70026544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
351-502
               

               
Cow position:
               
chr1:26894935-26895085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 70
               

               
Conread position:
               
351-503
               

               
Cow position:
               
chr1:81580219-81580063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 117
               

               
Conread position:
               
351-554
               

               
Cow position:
               
chr1:77133794-77133594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
351-556
               

               
Cow position:
               
chr1:67305200-67305404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
351-562
               

               
Cow position:
               
chr1:101632296-101632508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
351-570
               

               
Cow position:
               
chr1:57297523-57297301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 181
               

               
Conread position:
               
351-582
               

               
Cow position:
               
chr1:77462404-77462174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
351-586
               

               
Cow position:
               
chr1:32341168-32341401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 7
               

               
Conread position:
               
351-590
               

               
Cow position:
               
chr1:5597171-5597396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
198, 23
               

               
Conread position:
               
351-590
               

               
Cow position:
               
chr1:56225510-56225278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 161
               

               
Conread position:
               
351-590
               

               
Cow position:
               
chr1:69264849-69264624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
351-590
               

               
Cow position:
               
chr1:95499455-95499693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
91, 52
               

               
Conread position:
               
352-556
               

               
Cow position:
               
chr1:96472479-96472287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
352-569
               

               
Cow position:
               
chr1:69694953-69695179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
352-569
               

               
Cow position:
               
chr1:80631739-80631522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
352-575
               

               
Cow position:
               
chr1:70435038-70434817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
352-578
               

               
Cow position:
               
chr1:59518962-59518736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 159
               

               
Conread position:
               
352-578
               

               
Cow position:
               
chr1:78811078-78810850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
80, 49
               

               
Conread position:
               
352-581
               

               
Cow position:
               
chr1:43703449-43703226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
352-582
               

               
Cow position:
               
chr1:30441997-30441770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
352-586
               

               
Cow position:
               
chr1:46030321-46030546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
352-586
               

               
Cow position:
               
chr1:69539731-69539504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
92, 60
               

               
Conread position:
               
352-588
               

               
Cow position:
               
chr1:72011773-72011999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
352-588
               

               
Cow position:
               
chr1:95687064-95687301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
352-589
               

               
Cow position:
               
chr1:3923760-3923990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
352-589
               

               
Cow position:
               
chr1:28177048-28176803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
352-589
               

               
Cow position:
               
chr1:52956298-52956063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
28, 162
               

               
Conread position:
               
352-589
               

               
Cow position:
               
chr1:62291658-62291882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
352-589
               

               
Cow position:
               
chr1:68618891-68619134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:1991379-1991622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:10778603-10778376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:13414071-13413829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:40600085-40599851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 159
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:53425216-53424990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:53520951-53520709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 65
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:61884953-61884718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:73761315-73761549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
66, 41
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:95215150-95215383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
191, 71
               

               
Conread position:
               
352-590
               

               
Cow position:
               
chr1:100552010-100551773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
352-591
               

               
Cow position:
               
chr1:5580101-5579862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
352-594
               

               
Cow position:
               
chr1:61005522-61005767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
353-487
               

               
Cow position:
               
chr1:58037058-58036921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
353-492
               

               
Cow position:
               
chr1:55819097-55818961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
353-502
               

               
Cow position:
               
chr1:92989629-92989479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
353-505
               

               
Cow position:
               
chr1:61542879-61543032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
353-513
               

               
Cow position:
               
chr1:22394842-22394674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
353-540
               

               
Cow position:
               
chr1:62519402-62519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr1:101834858-101834675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
353-549
               

               
Cow position:
               
chr1:14206110-14206312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
353-556
               

               
Cow position:
               
chr1:38753962-38753754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
353-556
               

               
Cow position:
               
chr1:92926766-92926561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
353-556
               

               
Cow position:
               
chr1:95558076-95557873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
353-568
               

               
Cow position:
               
chr1:42545740-42545959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 186
               

               
Conread position:
               
353-568
               

               
Cow position:
               
chr1:60907416-60907195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
353-575
               

               
Cow position:
               
chr1:20581983-20581766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 114
               

               
Conread position:
               
353-579
               

               
Cow position:
               
chr1:31607849-31608085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
353-579
               

               
Cow position:
               
chr1:53495507-53495277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 69
               

               
Conread position:
               
353-580
               

               
Cow position:
               
chr1:24777950-24778166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
353-580
               

               
Cow position:
               
chr1:74947078-74947314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
79, 162
               

               
Conread position:
               
353-581
               

               
Cow position:
               
chr1:57880745-57880981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
353-584
               

               
Cow position:
               
chr1:8349279-8349502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
353-584
               

               
Cow position:
               
chr1:25734907-25734662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
353-585
               

               
Cow position:
               
chr1:42256463-42256700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
353-585
               

               
Cow position:
               
chr1:51394457-51394232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
353-586
               

               
Cow position:
               
chr1:11226207-11226439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
353-586
               

               
Cow position:
               
chr1:89443439-89443670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 121
               

               
Conread position:
               
353-587
               

               
Cow position:
               
chr1:1053620-1053394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
353-587
               

               
Cow position:
               
chr1:32001275-32001515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
68, 5
               

               
Conread position:
               
353-587
               

               
Cow position:
               
chr1:56719341-56719122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
188, 64
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:1165638-1165406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
147, 62
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:7186827-7186592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:21955334-21955569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:31234892-31235127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
183, 64
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:64189540-64189308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
89, 132
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:71643624-71643859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 64
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:73561608-73561845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:77502746-77502975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:83982341-83982571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
47, 54
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:85151142-85151375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
353-588
               

               
Cow position:
               
chr1:97820726-97820490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:4027903-4027665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:15691374-15691141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 69
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:21577848-21577608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:31934546-31934317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
211, 68
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:48581168-48580935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:64251006-64251248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 163
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:64804063-64804304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 60
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:86482943-86482707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr1:89076594-89076832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
91, 68
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:7443015-7442787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:11853646-11853887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:12870970-12871204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:15333934-15333680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:16961971-16962211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:21787375-21787129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
71, 162
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:29975560-29975795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 130
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:34300512-34300745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:35843887-35844127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:36932193-36931962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:37706931-37707166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
161, 110
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:40531064-40531307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:41181884-41181647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:42138897-42138669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:43379985-43380226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 70
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:43839568-43839330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:44769070-44769309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:45007505-45007269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:47658384-47658156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
91, 63
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:49796038-49795807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 68
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:52329479-52329726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:53374472-53374238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:55230015-55229787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:55260396-55260628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 5
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:57395897-57396124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:57639476-57639718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:68826865-68827103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:69415670-69415915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 161
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:70094379-70094140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:70538650-70538406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
96, 160
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:71136192-71135955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
89, 134
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:73584370-73584599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:86113361-86113610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:88618635-88618396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr1:99512226-99512450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
353-594
               

               
Cow position:
               
chr1:101822467-101822699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
354-536
               

               
Cow position:
               
chr1:2975956-2976138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
354-540
               

               
Cow position:
               
chr1:74927922-74927733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 59
               

               
Conread position:
               
354-565
               

               
Cow position:
               
chr1:49317458-49317669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
354-588
               

               
Cow position:
               
chr1:57524779-57525011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
354-588
               

               
Cow position:
               
chr1:66138359-66138121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
354-588
               

               
Cow position:
               
chr1:80363158-80363392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
354-588
               

               
Cow position:
               
chr1:82936559-82936777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
354-589
               

               
Cow position:
               
chr1:98551758-98551517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 159
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:1916189-1916432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:3323906-3323661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
145, 69
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:4573558-4573323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
185, 72
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:6867427-6867678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:6941497-6941268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:6958910-6958681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:26178773-26179012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
148, 63
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:51445924-51445682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
354-590
               

               
Cow position:
               
chr1:68217323-68217556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
354-594
               

               
Cow position:
               
chr1:3244889-3244649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
355-500
               

               
Cow position:
               
chr1:71665895-71666039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
87, 66
               

               
Conread position:
               
355-588
               

               
Cow position:
               
chr1:4691632-4691397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
355-588
               

               
Cow position:
               
chr1:12222570-12222800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 62
               

               
Conread position:
               
355-590
               

               
Cow position:
               
chr1:72286031-72286247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
355-590
               

               
Cow position:
               
chr1:98372669-98372431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
356-577
               

               
Cow position:
               
chr1:68763648-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
88, 66
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr1:13547949-13548187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr1:29626876-29627112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr1:47009069-47008833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 67
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr1:88652668-88652433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
356-590
               

               
Cow position:
               
chr1:96712770-96713011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
356-594
               

               
Cow position:
               
chr1:56229274-56229053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
357-564
               

               
Cow position:
               
chr1:51417806-51417605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
357-590
               

               
Cow position:
               
chr1:771789-772020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
92, 60
               

               
Conread position:
               
357-590
               

               
Cow position:
               
chr1:57263957-57264184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 152
               

               
Conread position:
               
358-505
               

               
Cow position:
               
chr1:71716544-71716396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
358-584
               

               
Cow position:
               
chr1:69004432-69004201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
123, 132
               

               
Conread position:
               
358-586
               

               
Cow position:
               
chr1:102825785-102826007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
358-589
               

               
Cow position:
               
chr1:30034567-30034349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
146, 55
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:3751904-3752139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:8532180-8532413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:20002194-20002433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 184
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:55135865-55135636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:71953110-71952890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:74084154-74084389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
358-590
               

               
Cow position:
               
chr1:80764501-80764732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
359-585
               

               
Cow position:
               
chr1:22745658-22745434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 63
               

               
Conread position:
               
359-589
               

               
Cow position:
               
chr1:100512642-100512399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
359-590
               

               
Cow position:
               
chr1:41252373-41252600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
359-590
               

               
Cow position:
               
chr1:43357977-43358212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
359-590
               

               
Cow position:
               
chr1:81471166-81470931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
359-590
               

               
Cow position:
               
chr1:88971088-88970862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
360-582
               

               
Cow position:
               
chr1:19568883-19568661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
360-590
               

               
Cow position:
               
chr1:11913847-11914075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
88, 102
               

               
Conread position:
               
360-590
               

               
Cow position:
               
chr1:26702171-26702405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
360-590
               

               
Cow position:
               
chr1:57247467-57247240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
360-590
               

               
Cow position:
               
chr1:68996212-68995974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 60
               

               
Conread position:
               
360-590
               

               
Cow position:
               
chr1:96964350-96964123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
361-542
               

               
Cow position:
               
chr1:51684838-51684654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 177
               

               
Conread position:
               
361-577
               

               
Cow position:
               
chr1:3243967-3243754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
361-588
               

               
Cow position:
               
chr1:3137957-3137737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
361-590
               

               
Cow position:
               
chr1:6077931-6077697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
361-590
               

               
Cow position:
               
chr1:76222657-76222888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
361-590
               

               
Cow position:
               
chr1:82505007-82504769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
91, 56
               

               
Conread position:
               
362-503
               

               
Cow position:
               
chr1:3352668-3352805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
363-542
               

               
Cow position:
               
chr1:91811811-91811638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
363-589
               

               
Cow position:
               
chr1:61391755-61391988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
57, 151
               

               
Conread position:
               
363-590
               

               
Cow position:
               
chr1:11770263-11770491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
363-590
               

               
Cow position:
               
chr1:64421360-64421133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
178, 54
               

               
Conread position:
               
363-590
               

               
Cow position:
               
chr1:82861810-82861577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
364-586
               

               
Cow position:
               
chr1:78783576-78783353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
365-542
               

               
Cow position:
               
chr1:85826374-85826197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
366-586
               

               
Cow position:
               
chr1:98563188-98562966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
366-588
               

               
Cow position:
               
chr1:5872941-5873167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
366-590
               

               
Cow position:
               
chr1:5162018-5162250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 149
               

               
Conread position:
               
367-590
               

               
Cow position:
               
chr1:56748626-56748392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
369-589
               

               
Cow position:
               
chr1:67290885-67290669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
164, 48
               

               
Conread position:
               
369-590
               

               
Cow position:
               
chr1:3340961-3340740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
370-499
               

               
Cow position:
               
chr1:70291591-70291462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
370-502
               

               
Cow position:
               
chr1:80942570-80942437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
370-532
               

               
Cow position:
               
chr1:52679318-52679169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
370-554
               

               
Cow position:
               
chr1:6166269-6166082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
370-557
               

               
Cow position:
               
chr1:100812553-100812735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 52
               

               
Conread position:
               
370-564
               

               
Cow position:
               
chr1:81638427-81638231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
370-576
               

               
Cow position:
               
chr1:43352632-43352840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
370-583
               

               
Cow position:
               
chr1:91039150-91039367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 52
               

               
Conread position:
               
370-585
               

               
Cow position:
               
chr1:83593786-83594000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
370-588
               

               
Cow position:
               
chr1:58419958-58419737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
370-589
               

               
Cow position:
               
chr1:61725092-61725309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:666388-666163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:22467959-22467733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:33811952-33811737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:41954219-41954451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:50679257-50679483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:68782614-68782848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:78794714-78794933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:79663651-79663863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
174, 46
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:84239087-84239304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 143
               

               
Conread position:
               
370-590
               

               
Cow position:
               
chr1:99095385-99095166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
371-590
               

               
Cow position:
               
chr1:15311884-15311671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
371-590
               

               
Cow position:
               
chr1:100706152-100705935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
73, 47
               

               
Conread position:
               
372-540
               

               
Cow position:
               
chr1:68245285-68245455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr1:70312786-70312954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 6
               

               
Conread position:
               
372-585
               

               
Cow position:
               
chr1:56674106-56674322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
372-586
               

               
Cow position:
               
chr1:28068373-28068155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
372-586
               

               
Cow position:
               
chr1:93044041-93043832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
172, 40
               

               
Conread position:
               
372-588
               

               
Cow position:
               
chr1:4402163-4401952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 44
               

               
Conread position:
               
372-588
               

               
Cow position:
               
chr1:29671501-29671719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
162, 71
               

               
Conread position:
               
372-588
               

               
Cow position:
               
chr1:51818962-51818746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
372-589
               

               
Cow position:
               
chr1:69678307-69678522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
68, 61
               

               
Conread position:
               
372-589
               

               
Cow position:
               
chr1:71818442-71818658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
372-589
               

               
Cow position:
               
chr1:98557764-98557980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
137, 40
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr1:1403461-1403669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr1:24655978-24655762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr1:29900945-29901154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr1:63905454-63905671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr1:68912759-68912554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr1:84255787-84255557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
372-591
               

               
Cow position:
               
chr1:65025289-65025058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
373-542
               

               
Cow position:
               
chr1:78184716-78184537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
373-544
               

               
Cow position:
               
chr1:64962648-64962820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
373-588
               

               
Cow position:
               
chr1:5409596-5409809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
373-590
               

               
Cow position:
               
chr1:44836204-44836427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
373-590
               

               
Cow position:
               
chr1:71295277-71295512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
373-590
               

               
Cow position:
               
chr1:84240911-84240702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
373-590
               

               
Cow position:
               
chr1:99637761-99637977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
374-532
               

               
Cow position:
               
chr1:47886465-47886628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
374-581
               

               
Cow position:
               
chr1:75933295-75933084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
374-588
               

               
Cow position:
               
chr1:74929699-74929915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
165, 30
               

               
Conread position:
               
374-589
               

               
Cow position:
               
chr1:20384601-20384817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
374-589
               

               
Cow position:
               
chr1:85596962-85596748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
374-590
               

               
Cow position:
               
chr1:1802159-1801942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
374-590
               

               
Cow position:
               
chr1:3776601-3776811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
374-590
               

               
Cow position:
               
chr1:34686206-34685997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
374-590
               

               
Cow position:
               
chr1:84170494-84170290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
374-590
               

               
Cow position:
               
chr1:98594591-98594373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
375-590
               

               
Cow position:
               
chr1:95050069-95050297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
377-584
               

               
Cow position:
               
chr1:24413466-24413248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 140
               

               
Conread position:
               
377-587
               

               
Cow position:
               
chr1:12595886-12596096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:3962683-3962881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:33720132-33719916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:53540406-53540193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:53671721-53671947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 134
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:55194453-55194661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:85593791-85593575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:93499635-93499425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr1:94404229-94404019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
377-593
               

               
Cow position:
               
chr1:21500445-21500651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
167, 44
               

               
Conread position:
               
377-594
               

               
Cow position:
               
chr1:57900726-57900942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
377-594
               

               
Cow position:
               
chr1:61564813-61564591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
378-588
               

               
Cow position:
               
chr1:11873347-11873552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
378-590
               

               
Cow position:
               
chr1:55357273-55357483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
378-590
               

               
Cow position:
               
chr1:95057068-95056858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
379-503
               

               
Cow position:
               
chr1:30418028-30418149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
379-590
               

               
Cow position:
               
chr1:4414192-4414405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
379-590
               

               
Cow position:
               
chr1:44165099-44164881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
379-590
               

               
Cow position:
               
chr1:84786777-84786573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
380-588
               

               
Cow position:
               
chr1:75967443-75967241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
380-589
               

               
Cow position:
               
chr1:32013966-32013760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
380-590
               

               
Cow position:
               
chr1:22729068-22728850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
380-590
               

               
Cow position:
               
chr1:56658045-56657841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
382-590
               

               
Cow position:
               
chr1:19998032-19998233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
383-503
               

               
Cow position:
               
chr1:61284064-61283940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
383-589
               

               
Cow position:
               
chr1:89437929-89438132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
383-590
               

               
Cow position:
               
chr1:34000920-34000708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
383-590
               

               
Cow position:
               
chr1:100741298-100741094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
385-590
               

               
Cow position:
               
chr1:4294064-4293865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
385-590
               

               
Cow position:
               
chr1:98577502-98577280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
386-589
               

               
Cow position:
               
chr1:29935378-29935578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
386-589
               

               
Cow position:
               
chr1:41004354-41004564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
386-590
               

               
Cow position:
               
chr1:70380134-70380343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
389-529
               

               
Cow position:
               
chr1:98396957-98397095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
389-590
               

               
Cow position:
               
chr1:87216462-87216265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
390-586
               

               
Cow position:
               
chr1:45673717-45673518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
33, 143
               

               
Conread position:
               
392-590
               

               
Cow position:
               
chr1:78030474-78030680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
397-586
               

               
Cow position:
               
chr1:1878023-1877834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
400-542
               

               
Cow position:
               
chr1:65909522-65909377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
400-590
               

               
Cow position:
               
chr1:84116388-84116204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
402-586
               

               
Cow position:
               
chr1:57698455-57698647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
403-562
               

               
Cow position:
               
chr1:101280727-101280885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
403-590
               

               
Cow position:
               
chr1:20288113-20287917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 112
               

               
Conread position:
               
404-589
               

               
Cow position:
               
chr1:46939870-46940058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
405-534
               

               
Cow position:
               
chr1:90595563-90595696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
407-585
               

               
Cow position:
               
chr1:102113118-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
410-590
               

               
Cow position:
               
chr1:11772089-11772278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
411-590
               

               
Cow position:
               
chr1:69940982-69941162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 125
               

               
Conread position:
               
413-585
               

               
Cow position:
               
chr1:53613213-53613385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
413-588
               

               
Cow position:
               
chr1:5393888-5394066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
413-590
               

               
Cow position:
               
chr1:31548819-31548639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
413-590
               

               
Cow position:
               
chr1:49839487-49839310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
421-590
               

               
Cow position:
               
chr1:52506580-52506742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
422-588
               

               
Cow position:
               
chr1:23633937-23634096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
422-590
               

               
Cow position:
               
chr1:31347946-31348107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
422-590
               

               
Cow position:
               
chr1:51628525-51628699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
422-594
               

               
Cow position:
               
chr1:94212204-94212032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
423-594
               

               
Cow position:
               
chr1:22628667-22628839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
425-590
               

               
Cow position:
               
chr1:53397956-53397790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
425-590
               

               
Cow position:
               
chr1:68282773-68282599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
426-589
               

               
Cow position:
               
chr1:98708410-98708246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
426-590
               

               
Cow position:
               
chr1:81180002-81180177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
430-585
               

               
Cow position:
               
chr1:97806754-97806596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
430-586
               

               
Cow position:
               
chr1:23969072-23969230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
430-590
               

               
Cow position:
               
chr1:49753894-49753733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
430-590
               

               
Cow position:
               
chr1:56711653-56711819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
431-578
               

               
Cow position:
               
chr1:89083075-89082922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
432-590
               

               
Cow position:
               
chr1:32631425-32631269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
432-593
               

               
Cow position:
               
chr1:18697383-18697553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
433-589
               

               
Cow position:
               
chr1:67821248-67821406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
433-590
               

               
Cow position:
               
chr1:31899573-31899727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 50
               

               
Conread position:
               
438-590
               

               
Cow position:
               
chr1:99570517-99570662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
440-588
               

               
Cow position:
               
chr1:36613323-36613470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
440-590
               

               
Cow position:
               
chr1:19545147-19545297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 69
               

               
Conread position:
               
440-590
               

               
Cow position:
               
chr1:30504423-30504273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
441-590
               

               
Cow position:
               
chr1:89395552-89395395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
443-588
               

               
Cow position:
               
chr1:64160289-64160145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
53, 91
               

               
Conread position:
               
443-590
               

               
Cow position:
               
chr1:7450079-7449935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
443-590
               

               
Cow position:
               
chr1:44136517-44136659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
443-590
               

               
Cow position:
               
chr1:98380623-98380774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
444-590
               

               
Cow position:
               
chr1:21093040-21092894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
445-590
               

               
Cow position:
               
chr1:57305778-57305635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
446-588
               

               
Cow position:
               
chr1:43893871-43893731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
454-590
               

               
Cow position:
               
chr1:62996434-62996297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
458-590
               

               
Cow position:
               
chr1:33717162-33717024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
465-594
               

               
Cow position:
               
chr1:99543122-99543250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
466-590
               

               
Cow position:
               
chr1:55686291-55686418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
467-590
               

               
Cow position:
               
chr1:99792740-99792614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
468-590
               

               
Cow position:
               
chr1:65638133-65638007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
472-590
               

               
Cow position:
               
chr1:95071904-95071788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               
Show alignments to all cow chromosomes.