Non-Coding RNA Search

Cow genome map


           Conread name:
           Spl1-SPL010028D01
        

               Conread position:
               278-590
               

               Cow position:
               chrX:48035562-48035250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               27, 21
               

               Conread position:
               308-588
               

               Cow position:
               chrX:36249756-36250037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               140, 126
               

               Conread position:
               322-586
               

               Cow position:
               chrX:35268952-35268714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               203
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               331-499
               

               Cow position:
               chrX:36514809-36514981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               24, 7
               

               Conread position:
               337-589
               

               Cow position:
               chrX:15147119-15147363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               162, 8
               

               Conread position:
               337-590
               

               Cow position:
               chrX:7695827-7695582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               114, 80
               

               Conread position:
               337-590
               

               Cow position:
               chrX:35382958-35383197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               338-590
               

               Cow position:
               chrX:41166888-41167142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 17
               

               Conread position:
               341-542
               

               Cow position:
               chrX:5919564-5919367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               73, 81
               

               Conread position:
               343-542
               

               Cow position:
               chrX:48243396-48243590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               101, 78
               

               Conread position:
               343-590
               

               Cow position:
               chrX:41238282-41238543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               10, 68
               

               Conread position:
               347-525
               

               Cow position:
               chrX:44873492-44873673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               347-588
               

               Cow position:
               chrX:7509209-7508964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               100, 74
               

               Conread position:
               347-590
               

               Cow position:
               chrX:4043798-4044028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               347-590
               

               Cow position:
               chrX:6544323-6544079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               85, 70
               

               Conread position:
               347-590
               

               Cow position:
               chrX:32170820-32171059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               347-590
               

               Cow position:
               chrX:33493845-33493597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               96, 86
               

               Conread position:
               347-590
               

               Cow position:
               chrX:40480803-40481050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               102, 64
               

               Conread position:
               348-500
               

               Cow position:
               chrX:20881874-20882025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               100, 65
               

               Conread position:
               348-539
               

               Cow position:
               chrX:19003362-19003174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               96, 65
               

               Conread position:
               348-556
               

               Cow position:
               chrX:11614763-11614556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               165
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               96, 69
               

               Conread position:
               348-586
               

               Cow position:
               chrX:37836651-37836414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               101, 71
               

               Conread position:
               348-589
               

               Cow position:
               chrX:5900531-5900281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               100, 61
               

               Conread position:
               348-590
               

               Cow position:
               chrX:7722057-7721807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               187
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               92, 165
               

               Conread position:
               348-590
               

               Cow position:
               chrX:17662530-17662774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 64
               

               Conread position:
               348-590
               

               Cow position:
               chrX:18694862-18695097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               188
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               94, 73
               

               Conread position:
               348-590
               

               Cow position:
               chrX:21004749-21004504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               101, 164
               

               Conread position:
               348-590
               

               Cow position:
               chrX:28865937-28866170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               49, 70
               

               Conread position:
               348-590
               

               Cow position:
               chrX:35413679-35413455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               101, 22
               

               Conread position:
               348-590
               

               Cow position:
               chrX:41878865-41879112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               56, 69
               

               Conread position:
               349-492
               

               Cow position:
               chrX:39220143-39220000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               99, 68
               

               Conread position:
               349-503
               

               Cow position:
               chrX:29549481-29549638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               100, 64
               

               Conread position:
               349-584
               

               Cow position:
               chrX:4399190-4398954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               22, 45
               

               Conread position:
               349-586
               

               Cow position:
               chrX:48652657-48652900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               99, 73
               

               Conread position:
               349-587
               

               Cow position:
               chrX:47873272-47873516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               99, 68
               

               Conread position:
               349-588
               

               Cow position:
               chrX:34411910-34411665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               83, 165
               

               Conread position:
               349-588
               

               Cow position:
               chrX:47344360-47344119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               99, 68
               

               Conread position:
               349-589
               

               Cow position:
               chrX:45598541-45598780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               59, 8
               

               Conread position:
               349-589
               

               Cow position:
               chrX:47484200-47484448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               100, 68
               

               Conread position:
               349-590
               

               Cow position:
               chrX:2467948-2467702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               51, 58
               

               Conread position:
               349-590
               

               Cow position:
               chrX:17231799-17231557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               92, 171
               

               Conread position:
               349-590
               

               Cow position:
               chrX:37489783-37489553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               100, 60
               

               Conread position:
               349-590
               

               Cow position:
               chrX:40809757-40809509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               349-590
               

               Cow position:
               chrX:42235460-42235711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               62, 154
               

               Conread position:
               349-590
               

               Cow position:
               chrX:46722670-46722918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               349-590
               

               Cow position:
               chrX:48010668-48010417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               349-590
               

               Cow position:
               chrX:48194971-48195218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               95, 84
               

               Conread position:
               349-594
               

               Cow position:
               chrX:47967671-47967418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               65, 190
               

               Conread position:
               350-442
               

               Cow position:
               chrX:20743667-20743576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               93
               

               Alignm identity:
               80
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               350-481
               

               Cow position:
               chrX:17301243-17301378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               44, 68
               

               Conread position:
               350-498
               

               Cow position:
               chrX:23562695-23562549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               97, 63
               

               Conread position:
               350-500
               

               Cow position:
               chrX:40680677-40680523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               350-501
               

               Cow position:
               chrX:21327976-21327817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               350-502
               

               Cow position:
               chrX:42855521-42855365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               66, 86
               

               Conread position:
               350-503
               

               Cow position:
               chrX:1572076-1572228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               93, 69
               

               Conread position:
               350-503
               

               Cow position:
               chrX:20168621-20168467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               99, 62
               

               Conread position:
               350-503
               

               Cow position:
               chrX:27261254-27261097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               350-504
               

               Cow position:
               chrX:10516316-10516164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               113, 96
               

               Conread position:
               350-520
               

               Cow position:
               chrX:4991950-4992123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               49, 57
               

               Conread position:
               350-520
               

               Cow position:
               chrX:35848627-35848454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               63, 48
               

               Conread position:
               350-522
               

               Cow position:
               chrX:29194293-29194125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               94, 21
               

               Conread position:
               350-526
               

               Cow position:
               chrX:38654367-38654543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               94, 71
               

               Conread position:
               350-528
               

               Cow position:
               chrX:6265535-6265712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               94, 57
               

               Conread position:
               350-531
               

               Cow position:
               chrX:5679506-5679684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               101, 70
               

               Conread position:
               350-535
               

               Cow position:
               chrX:40320469-40320283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               94, 67
               

               Conread position:
               350-538
               

               Cow position:
               chrX:40826688-40826880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               98, 56
               

               Conread position:
               350-539
               

               Cow position:
               chrX:39415307-39415493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               92, 57
               

               Conread position:
               350-539
               

               Cow position:
               chrX:40692688-40692877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               93, 72
               

               Conread position:
               350-540
               

               Cow position:
               chrX:9365613-9365802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               99, 70
               

               Conread position:
               350-540
               

               Cow position:
               chrX:41027222-41027030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               94, 153
               

               Conread position:
               350-541
               

               Cow position:
               chrX:34315582-34315396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               65, 72
               

               Conread position:
               350-542
               

               Cow position:
               chrX:38066392-38066579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               66, 81
               

               Conread position:
               350-542
               

               Cow position:
               chrX:38728797-38728608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               99, 46
               

               Conread position:
               350-545
               

               Cow position:
               chrX:31294509-31294689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               350-548
               

               Cow position:
               chrX:31729505-31729308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               98, 63
               

               Conread position:
               350-549
               

               Cow position:
               chrX:42873448-42873256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               160, 20
               

               Conread position:
               350-550
               

               Cow position:
               chrX:7710476-7710680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               92, 63
               

               Conread position:
               350-551
               

               Cow position:
               chrX:15815147-15814949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               98, 67
               

               Conread position:
               350-552
               

               Cow position:
               chrX:21566470-21566263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               350-553
               

               Cow position:
               chrX:41871130-41870933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               350-554
               

               Cow position:
               chrX:11085000-11085198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 67
               

               Conread position:
               350-557
               

               Cow position:
               chrX:616196-616406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               94, 163
               

               Conread position:
               350-565
               

               Cow position:
               chrX:20584391-20584166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               82, 164
               

               Conread position:
               350-569
               

               Cow position:
               chrX:35822407-35822184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               94, 74
               

               Conread position:
               350-570
               

               Cow position:
               chrX:27228189-27227966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               94, 62
               

               Conread position:
               350-575
               

               Cow position:
               chrX:44192384-44192615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               166, 67
               

               Conread position:
               350-576
               

               Cow position:
               chrX:878317-878536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               350-576
               

               Cow position:
               chrX:41068788-41068564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               180
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               73, 176
               

               Conread position:
               350-579
               

               Cow position:
               chrX:23513954-23514181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 10
               

               Conread position:
               350-582
               

               Cow position:
               chrX:11454979-11455223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               67, 212
               

               Conread position:
               350-582
               

               Cow position:
               chrX:30133255-30133498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               93, 80
               

               Conread position:
               350-582
               

               Cow position:
               chrX:40269554-40269315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               61, 82
               

               Conread position:
               350-584
               

               Cow position:
               chrX:7351363-7351124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               99, 60
               

               Conread position:
               350-584
               

               Cow position:
               chrX:12979771-12980002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               66, 84
               

               Conread position:
               350-584
               

               Cow position:
               chrX:27680461-27680230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 123
               

               Conread position:
               350-584
               

               Cow position:
               chrX:32821091-32820857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 18
               

               Conread position:
               350-584
               

               Cow position:
               chrX:34792248-34792482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               194, 71
               

               Conread position:
               350-585
               

               Cow position:
               chrX:6407607-6407376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               132, 25
               

               Conread position:
               350-586
               

               Cow position:
               chrX:6690197-6690421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               92, 60
               

               Conread position:
               350-586
               

               Cow position:
               chrX:11082559-11082787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               62, 74
               

               Conread position:
               350-586
               

               Cow position:
               chrX:13647722-13647957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               99, 51
               

               Conread position:
               350-586
               

               Cow position:
               chrX:22466018-22465782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 148
               

               Conread position:
               350-586
               

               Cow position:
               chrX:22624539-22624307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               76, 63
               

               Conread position:
               350-586
               

               Cow position:
               chrX:35885664-35885903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               104, 67
               

               Conread position:
               350-586
               

               Cow position:
               chrX:38218777-38218534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               66, 154
               

               Conread position:
               350-586
               

               Cow position:
               chrX:40557616-40557849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               90, 162
               

               Conread position:
               350-587
               

               Cow position:
               chrX:38964171-38963932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 73
               

               Conread position:
               350-588
               

               Cow position:
               chrX:169483-169701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               350-588
               

               Cow position:
               chrX:5638106-5638341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               94, 70
               

               Conread position:
               350-588
               

               Cow position:
               chrX:7277974-7277744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               122, 63
               

               Conread position:
               350-588
               

               Cow position:
               chrX:17726038-17725799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               99, 82
               

               Conread position:
               350-588
               

               Cow position:
               chrX:32310168-32309930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               92, 135
               

               Conread position:
               350-588
               

               Cow position:
               chrX:34543847-34543612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               68, 85
               

               Conread position:
               350-588
               

               Cow position:
               chrX:35288716-35288485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               107, 15
               

               Conread position:
               350-588
               

               Cow position:
               chrX:42011344-42011104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               92, 47
               

               Conread position:
               350-588
               

               Cow position:
               chrX:43527571-43527328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               99, 56
               

               Conread position:
               350-589
               

               Cow position:
               chrX:1810097-1810338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               123, 96
               

               Conread position:
               350-589
               

               Cow position:
               chrX:13868765-13868517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               107, 37
               

               Conread position:
               350-589
               

               Cow position:
               chrX:13913138-13912904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               43, 116
               

               Conread position:
               350-589
               

               Cow position:
               chrX:15485571-15485803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 68
               

               Conread position:
               350-589
               

               Cow position:
               chrX:39938460-39938699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               99, 61
               

               Conread position:
               350-589
               

               Cow position:
               chrX:40116483-40116245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               350-589
               

               Cow position:
               chrX:45993291-45993042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               31, 57
               

               Conread position:
               350-590
               

               Cow position:
               chrX:161475-161244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               95, 72
               

               Conread position:
               350-590
               

               Cow position:
               chrX:678492-678745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 122
               

               Conread position:
               350-590
               

               Cow position:
               chrX:917305-917549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               98, 39
               

               Conread position:
               350-590
               

               Cow position:
               chrX:1055318-1055567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               63, 145
               

               Conread position:
               350-590
               

               Cow position:
               chrX:1499728-1499492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 67
               

               Conread position:
               350-590
               

               Cow position:
               chrX:1615980-1616225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               93, 20
               

               Conread position:
               350-590
               

               Cow position:
               chrX:5872380-5872136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               102, 63
               

               Conread position:
               350-590
               

               Cow position:
               chrX:6488642-6488409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               90, 72
               

               Conread position:
               350-590
               

               Cow position:
               chrX:7646314-7646083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               97, 59
               

               Conread position:
               350-590
               

               Cow position:
               chrX:8869339-8869586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               97, 83
               

               Conread position:
               350-590
               

               Cow position:
               chrX:8925762-8925528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               94, 68
               

               Conread position:
               350-590
               

               Cow position:
               chrX:9416621-9416870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               66, 35
               

               Conread position:
               350-590
               

               Cow position:
               chrX:10411923-10412166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 62
               

               Conread position:
               350-590
               

               Cow position:
               chrX:10831427-10831674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 151
               

               Conread position:
               350-590
               

               Cow position:
               chrX:10959332-10959578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               79, 57
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11073128-11073366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               96, 63
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11589525-11589766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 70
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11656144-11655911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               194, 70
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11717720-11717960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 142
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11844178-11844420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               50, 119
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11856493-11856251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 67
               

               Conread position:
               350-590
               

               Cow position:
               chrX:11938870-11939104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               350-590
               

               Cow position:
               chrX:13785297-13785535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               92, 163
               

               Conread position:
               350-590
               

               Cow position:
               chrX:14883893-14884139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               90, 162
               

               Conread position:
               350-590
               

               Cow position:
               chrX:14900670-14900899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:16762834-16762595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               98, 76
               

               Conread position:
               350-590
               

               Cow position:
               chrX:17630740-17630980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               92, 138
               

               Conread position:
               350-590
               

               Cow position:
               chrX:17795044-17794808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               65, 100
               

               Conread position:
               350-590
               

               Cow position:
               chrX:19930714-19930478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               61, 27
               

               Conread position:
               350-590
               

               Cow position:
               chrX:20339829-20340068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               95, 43
               

               Conread position:
               350-590
               

               Cow position:
               chrX:20801832-20801602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:20887578-20887822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               61, 27
               

               Conread position:
               350-590
               

               Cow position:
               chrX:22074859-22074623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               48, 73
               

               Conread position:
               350-590
               

               Cow position:
               chrX:23091933-23091704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 75
               

               Conread position:
               350-590
               

               Cow position:
               chrX:23785710-23785476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               192
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               149, 67
               

               Conread position:
               350-590
               

               Cow position:
               chrX:24105687-24105449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               98, 76
               

               Conread position:
               350-590
               

               Cow position:
               chrX:25338251-25338002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               92, 165
               

               Conread position:
               350-590
               

               Cow position:
               chrX:25815838-25816073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               59, 149
               

               Conread position:
               350-590
               

               Cow position:
               chrX:26875818-26876060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               67, 162
               

               Conread position:
               350-590
               

               Cow position:
               chrX:27393963-27394191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 63
               

               Conread position:
               350-590
               

               Cow position:
               chrX:27431855-27432096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               92, 71
               

               Conread position:
               350-590
               

               Cow position:
               chrX:27446749-27446511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               106, 61
               

               Conread position:
               350-590
               

               Cow position:
               chrX:28134403-28134168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               94, 33
               

               Conread position:
               350-590
               

               Cow position:
               chrX:28878111-28878336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:29121110-29120879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               94, 61
               

               Conread position:
               350-590
               

               Cow position:
               chrX:29542154-29542396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               98, 83
               

               Conread position:
               350-590
               

               Cow position:
               chrX:29601765-29602010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 67
               

               Conread position:
               350-590
               

               Cow position:
               chrX:30543221-30543468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               68, 154
               

               Conread position:
               350-590
               

               Cow position:
               chrX:30962814-30963049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               107, 56
               

               Conread position:
               350-590
               

               Cow position:
               chrX:31260556-31260807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               65, 97
               

               Conread position:
               350-590
               

               Cow position:
               chrX:31312092-31311848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               90, 160
               

               Conread position:
               350-590
               

               Cow position:
               chrX:31436537-31436305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:31442766-31442999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:31489583-31489334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               111, 73
               

               Conread position:
               350-590
               

               Cow position:
               chrX:31948872-31949108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               151, 67
               

               Conread position:
               350-590
               

               Cow position:
               chrX:32623634-32623405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               59, 73
               

               Conread position:
               350-590
               

               Cow position:
               chrX:33640038-33639794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               74, 45
               

               Conread position:
               350-590
               

               Cow position:
               chrX:34441391-34441629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 33
               

               Conread position:
               350-590
               

               Cow position:
               chrX:34502983-34502741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 59
               

               Conread position:
               350-590
               

               Cow position:
               chrX:34532583-34532351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               92, 82
               

               Conread position:
               350-590
               

               Cow position:
               chrX:34565349-34565115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               70, 139
               

               Conread position:
               350-590
               

               Cow position:
               chrX:36061223-36060974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               49, 58
               

               Conread position:
               350-590
               

               Cow position:
               chrX:36068078-36067842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               64, 72
               

               Conread position:
               350-590
               

               Cow position:
               chrX:36976014-36975772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               107, 34
               

               Conread position:
               350-590
               

               Cow position:
               chrX:37781046-37781295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               97, 83
               

               Conread position:
               350-590
               

               Cow position:
               chrX:37910508-37910275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:38549510-38549271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               196
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               16, 71
               

               Conread position:
               350-590
               

               Cow position:
               chrX:38853261-38853019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               67, 94
               

               Conread position:
               350-590
               

               Cow position:
               chrX:38936763-38936523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               99, 151
               

               Conread position:
               350-590
               

               Cow position:
               chrX:39126389-39126159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:41123122-41122894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:41884349-41884595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               97, 67
               

               Conread position:
               350-590
               

               Cow position:
               chrX:42247119-42247361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 143
               

               Conread position:
               350-590
               

               Cow position:
               chrX:42469878-42470114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 141
               

               Conread position:
               350-590
               

               Cow position:
               chrX:42498984-42499206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               350-590
               

               Cow position:
               chrX:43779784-43780030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               98, 50
               

               Conread position:
               350-590
               

               Cow position:
               chrX:44656894-44657142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               83, 51
               

               Conread position:
               350-590
               

               Cow position:
               chrX:45403762-45404011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               37, 55
               

               Conread position:
               350-590
               

               Cow position:
               chrX:46072754-46072998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               94, 159
               

               Conread position:
               350-590
               

               Cow position:
               chrX:47191345-47191576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               81, 14
               

               Conread position:
               350-591
               

               Cow position:
               chrX:29680198-29680439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 67
               

               Conread position:
               350-591
               

               Cow position:
               chrX:42171231-42171478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               98, 74
               

               Conread position:
               350-593
               

               Cow position:
               chrX:27705649-27705409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               99, 48
               

               Conread position:
               350-594
               

               Cow position:
               chrX:842220-841977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               98, 47
               

               Conread position:
               350-594
               

               Cow position:
               chrX:4825769-4826009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               70, 88
               

               Conread position:
               350-594
               

               Cow position:
               chrX:10437601-10437846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               65, 122
               

               Conread position:
               350-594
               

               Cow position:
               chrX:33000968-33000722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               98, 62
               

               Conread position:
               350-594
               

               Cow position:
               chrX:45846164-45845914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               108, 27
               

               Conread position:
               350-594
               

               Cow position:
               chrX:47046447-47046701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               119, 7
               

               Conread position:
               351-542
               

               Cow position:
               chrX:26493571-26493766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               91, 163
               

               Conread position:
               351-579
               

               Cow position:
               chrX:48385301-48385530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               150, 24
               

               Conread position:
               351-590
               

               Cow position:
               chrX:755025-754781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               105, 60
               

               Conread position:
               351-590
               

               Cow position:
               chrX:4632796-4633028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               98, 70
               

               Conread position:
               351-590
               

               Cow position:
               chrX:7497305-7497066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               91, 137
               

               Conread position:
               351-590
               

               Cow position:
               chrX:31340773-31340527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 47
               

               Conread position:
               351-590
               

               Cow position:
               chrX:40035378-40035622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               15, 28
               

               Conread position:
               352-517
               

               Cow position:
               chrX:31515234-31515065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               84, 152
               

               Conread position:
               352-545
               

               Cow position:
               chrX:19273646-19273855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               61, 173
               

               Conread position:
               352-578
               

               Cow position:
               chrX:44397074-44396856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               352-586
               

               Cow position:
               chrX:26440721-26440953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               352-588
               

               Cow position:
               chrX:7571966-7571731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               96, 71
               

               Conread position:
               352-588
               

               Cow position:
               chrX:37843780-37843545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               44, 50
               

               Conread position:
               352-589
               

               Cow position:
               chrX:7162120-7161894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               63, 71
               

               Conread position:
               352-589
               

               Cow position:
               chrX:16416570-16416330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               92, 46
               

               Conread position:
               352-590
               

               Cow position:
               chrX:618941-619185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               88, 160
               

               Conread position:
               352-590
               

               Cow position:
               chrX:9201609-9201369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               92, 49
               

               Conread position:
               352-590
               

               Cow position:
               chrX:13382392-13382148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 69
               

               Conread position:
               352-590
               

               Cow position:
               chrX:19188992-19188759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               97, 56
               

               Conread position:
               352-590
               

               Cow position:
               chrX:26625610-26625854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 57
               

               Conread position:
               352-590
               

               Cow position:
               chrX:33466670-33466436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               12, 66
               

               Conread position:
               352-590
               

               Cow position:
               chrX:35224357-35224122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               95, 55
               

               Conread position:
               352-590
               

               Cow position:
               chrX:38642310-38642080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               192, 71
               

               Conread position:
               352-590
               

               Cow position:
               chrX:39558287-39558524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 70
               

               Conread position:
               352-590
               

               Cow position:
               chrX:41674165-41673926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               166, 69
               

               Conread position:
               352-590
               

               Cow position:
               chrX:42492462-42492692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               151, 64
               

               Conread position:
               352-590
               

               Cow position:
               chrX:43730163-43730392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 25
               

               Conread position:
               352-590
               

               Cow position:
               chrX:45502207-45501971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 65
               

               Conread position:
               352-590
               

               Cow position:
               chrX:47186263-47186498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               97, 63
               

               Conread position:
               353-529
               

               Cow position:
               chrX:24331836-24331662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               91, 54
               

               Conread position:
               353-533
               

               Cow position:
               chrX:27119757-27119579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               96, 68
               

               Conread position:
               353-540
               

               Cow position:
               chrX:16055274-16055084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               11, 81
               

               Conread position:
               353-540
               

               Cow position:
               chrX:32215262-32215070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               353-542
               

               Cow position:
               chrX:18204407-18204592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               143, 57
               

               Conread position:
               353-542
               

               Cow position:
               chrX:45875452-45875262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               353-544
               

               Cow position:
               chrX:24365761-24365956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               61, 178
               

               Conread position:
               353-552
               

               Cow position:
               chrX:27685308-27685108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               99, 64
               

               Conread position:
               353-553
               

               Cow position:
               chrX:27945994-27946200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               95, 64
               

               Conread position:
               353-556
               

               Cow position:
               chrX:12405321-12405530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               353-571
               

               Cow position:
               chrX:36356172-36355957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               90, 60
               

               Conread position:
               353-574
               

               Cow position:
               chrX:8917454-8917231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               96, 53
               

               Conread position:
               353-575
               

               Cow position:
               chrX:22454037-22454252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               148, 64
               

               Conread position:
               353-582
               

               Cow position:
               chrX:20677426-20677202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               184, 59
               

               Conread position:
               353-583
               

               Cow position:
               chrX:25207795-25208017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               146, 51
               

               Conread position:
               353-584
               

               Cow position:
               chrX:22822106-22821876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               91, 55
               

               Conread position:
               353-584
               

               Cow position:
               chrX:37955907-37955666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               61, 171
               

               Conread position:
               353-585
               

               Cow position:
               chrX:27771906-27772133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               110, 11
               

               Conread position:
               353-585
               

               Cow position:
               chrX:46433551-46433310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               93, 64
               

               Conread position:
               353-586
               

               Cow position:
               chrX:29289638-29289403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               95, 60
               

               Conread position:
               353-586
               

               Cow position:
               chrX:34662786-34663017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               88, 63
               

               Conread position:
               353-586
               

               Cow position:
               chrX:45099188-45098938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               353-587
               

               Cow position:
               chrX:15231600-15231832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               59, 69
               

               Conread position:
               353-587
               

               Cow position:
               chrX:46146501-46146735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               89, 69
               

               Conread position:
               353-588
               

               Cow position:
               chrX:1175922-1176158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               108, 68
               

               Conread position:
               353-588
               

               Cow position:
               chrX:26493066-26492827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 62
               

               Conread position:
               353-588
               

               Cow position:
               chrX:36778468-36778232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               190, 87
               

               Conread position:
               353-588
               

               Cow position:
               chrX:46032667-46032897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               145, 68
               

               Conread position:
               353-588
               

               Cow position:
               chrX:46770903-46771145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               145, 60
               

               Conread position:
               353-589
               

               Cow position:
               chrX:20791755-20791994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               353-589
               

               Cow position:
               chrX:27508962-27509196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               353-589
               

               Cow position:
               chrX:31250448-31250213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               94, 64
               

               Conread position:
               353-589
               

               Cow position:
               chrX:34238779-34238544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               63, 93
               

               Conread position:
               353-590
               

               Cow position:
               chrX:1514352-1514578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               95, 64
               

               Conread position:
               353-590
               

               Cow position:
               chrX:3580004-3579767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 64
               

               Conread position:
               353-590
               

               Cow position:
               chrX:6234389-6234626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               21, 70
               

               Conread position:
               353-590
               

               Cow position:
               chrX:7718909-7718677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               95, 55
               

               Conread position:
               353-590
               

               Cow position:
               chrX:8731154-8730902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               353-590
               

               Cow position:
               chrX:9425683-9425919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               108, 73
               

               Conread position:
               353-590
               

               Cow position:
               chrX:9635130-9635358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               353-590
               

               Cow position:
               chrX:10865815-10866045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               93, 14
               

               Conread position:
               353-590
               

               Cow position:
               chrX:11633742-11633501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 69
               

               Conread position:
               353-590
               

               Cow position:
               chrX:12018352-12018098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               91, 68
               

               Conread position:
               353-590
               

               Cow position:
               chrX:12290779-12290558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               196, 58
               

               Conread position:
               353-590
               

               Cow position:
               chrX:19690275-19690040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               52, 37
               

               Conread position:
               353-590
               

               Cow position:
               chrX:20151920-20151673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               61, 216
               

               Conread position:
               353-590
               

               Cow position:
               chrX:20710134-20709894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               92, 36
               

               Conread position:
               353-590
               

               Cow position:
               chrX:21593347-21593106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               91, 67
               

               Conread position:
               353-590
               

               Cow position:
               chrX:23583621-23583381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               96, 72
               

               Conread position:
               353-590
               

               Cow position:
               chrX:24287873-24288110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               93, 21
               

               Conread position:
               353-590
               

               Cow position:
               chrX:25035322-25035565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               89, 64
               

               Conread position:
               353-590
               

               Cow position:
               chrX:25713856-25713616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               55, 133
               

               Conread position:
               353-590
               

               Cow position:
               chrX:27176252-27176497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               73, 157
               

               Conread position:
               353-590
               

               Cow position:
               chrX:28013382-28013617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               23, 69
               

               Conread position:
               353-590
               

               Cow position:
               chrX:28111570-28111329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               89, 161
               

               Conread position:
               353-590
               

               Cow position:
               chrX:28846833-28847056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               353-590
               

               Cow position:
               chrX:29544817-29545057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               91, 61
               

               Conread position:
               353-590
               

               Cow position:
               chrX:32420272-32420041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               108, 24
               

               Conread position:
               353-590
               

               Cow position:
               chrX:36961701-36961458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 65
               

               Conread position:
               353-590
               

               Cow position:
               chrX:38071706-38071948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               108, 73
               

               Conread position:
               353-590
               

               Cow position:
               chrX:40183294-40183527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               149, 64
               

               Conread position:
               353-590
               

               Cow position:
               chrX:42507588-42507824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               156, 56
               

               Conread position:
               353-590
               

               Cow position:
               chrX:44054862-44054624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               93, 56
               

               Conread position:
               353-590
               

               Cow position:
               chrX:45414244-45414477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               94, 51
               

               Conread position:
               353-590
               

               Cow position:
               chrX:46587882-46587640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               95, 60
               

               Conread position:
               353-593
               

               Cow position:
               chrX:45429962-45430197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               174, 79
               

               Conread position:
               353-594
               

               Cow position:
               chrX:4269004-4269248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               14, 60
               

               Conread position:
               353-594
               

               Cow position:
               chrX:14599597-14599348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               56, 161
               

               Conread position:
               354-505
               

               Cow position:
               chrX:37129328-37129176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               104, 69
               

               Conread position:
               354-521
               

               Cow position:
               chrX:47657445-47657276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               76, 59
               

               Conread position:
               354-578
               

               Cow position:
               chrX:41991986-41992207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               354-582
               

               Cow position:
               chrX:44961810-44961578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               88, 68
               

               Conread position:
               354-586
               

               Cow position:
               chrX:34754137-34754365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               95, 17
               

               Conread position:
               354-588
               

               Cow position:
               chrX:15007090-15007326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               90, 63
               

               Conread position:
               354-588
               

               Cow position:
               chrX:17542019-17541788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               88, 63
               

               Conread position:
               354-588
               

               Cow position:
               chrX:21672613-21672376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               95, 66
               

               Conread position:
               354-590
               

               Cow position:
               chrX:3654667-3654427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               90, 68
               

               Conread position:
               354-590
               

               Cow position:
               chrX:6278439-6278683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               90, 68
               

               Conread position:
               354-590
               

               Cow position:
               chrX:12309327-12309566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               89, 62
               

               Conread position:
               354-590
               

               Cow position:
               chrX:23563732-23563974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               94, 63
               

               Conread position:
               354-590
               

               Cow position:
               chrX:34554782-34554551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               92, 40
               

               Conread position:
               354-590
               

               Cow position:
               chrX:37232466-37232232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               93, 47
               

               Conread position:
               354-590
               

               Cow position:
               chrX:37541177-37540947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               94, 40
               

               Conread position:
               354-590
               

               Cow position:
               chrX:46532436-46532687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               355-517
               

               Cow position:
               chrX:48044456-48044618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               355-559
               

               Cow position:
               chrX:29723798-29723595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               94, 62
               

               Conread position:
               355-589
               

               Cow position:
               chrX:20697551-20697784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               94, 65
               

               Conread position:
               355-590
               

               Cow position:
               chrX:12249869-12249629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               37, 67
               

               Conread position:
               355-590
               

               Cow position:
               chrX:25570935-25571171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               87, 119
               

               Conread position:
               355-590
               

               Cow position:
               chrX:45113677-45113451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               23, 59
               

               Conread position:
               356-590
               

               Cow position:
               chrX:8070642-8070879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               85, 60
               

               Conread position:
               356-590
               

               Cow position:
               chrX:10302397-10302161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               100, 155
               

               Conread position:
               356-590
               

               Cow position:
               chrX:34402057-34401820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               356-590
               

               Cow position:
               chrX:42994670-42994437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               189
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               88, 61
               

               Conread position:
               357-590
               

               Cow position:
               chrX:9855354-9855123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 62
               

               Conread position:
               357-590
               

               Cow position:
               chrX:9954195-9953964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               184, 60
               

               Conread position:
               358-590
               

               Cow position:
               chrX:151960-151724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               90, 63
               

               Conread position:
               358-590
               

               Cow position:
               chrX:3160973-3161191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               111, 43
               

               Conread position:
               358-590
               

               Cow position:
               chrX:16514207-16514442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               84, 19
               

               Conread position:
               358-590
               

               Cow position:
               chrX:17888364-17888583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               358-590
               

               Cow position:
               chrX:28845888-28845668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               86, 65
               

               Conread position:
               358-590
               

               Cow position:
               chrX:32743593-32743361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               91, 160
               

               Conread position:
               358-590
               

               Cow position:
               chrX:47481855-47481622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               85, 57
               

               Conread position:
               359-518
               

               Cow position:
               chrX:29487954-29488107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               359-590
               

               Cow position:
               chrX:22482643-22482866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               55, 74
               

               Conread position:
               359-590
               

               Cow position:
               chrX:28105972-28105743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               85, 61
               

               Conread position:
               359-590
               

               Cow position:
               chrX:38094462-38094703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               47, 233
               

               Conread position:
               360-581
               

               Cow position:
               chrX:23667179-23666954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               6, 12
               

               Conread position:
               360-590
               

               Cow position:
               chrX:8797309-8797070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               360-590
               

               Cow position:
               chrX:11675118-11674888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               89, 11
               

               Conread position:
               361-588
               

               Cow position:
               chrX:14222128-14221904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               90, 72
               

               Conread position:
               361-589
               

               Cow position:
               chrX:32330219-32329982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               53, 132
               

               Conread position:
               361-589
               

               Cow position:
               chrX:42461692-42461922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               83, 55
               

               Conread position:
               361-590
               

               Cow position:
               chrX:25238232-25237999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               11, 105
               

               Conread position:
               361-590
               

               Cow position:
               chrX:27175055-27174818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               361-590
               

               Cow position:
               chrX:42875035-42874800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 59
               

               Conread position:
               362-590
               

               Cow position:
               chrX:5017360-5017585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               82, 151
               

               Conread position:
               362-590
               

               Cow position:
               chrX:35681393-35681169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               82, 55
               

               Conread position:
               363-590
               

               Cow position:
               chrX:8900077-8899847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               100, 54
               

               Conread position:
               363-590
               

               Cow position:
               chrX:15139497-15139722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               81, 54
               

               Conread position:
               363-590
               

               Cow position:
               chrX:20752303-20752082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               8, 19
               

               Conread position:
               363-590
               

               Cow position:
               chrX:34270452-34270229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               81, 59
               

               Conread position:
               364-525
               

               Cow position:
               chrX:48823271-48823106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               45, 19
               

               Conread position:
               365-522
               

               Cow position:
               chrX:8326808-8326651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               6, 58
               

               Conread position:
               366-588
               

               Cow position:
               chrX:39545928-39546149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               63, 77
               

               Conread position:
               366-590
               

               Cow position:
               chrX:17498132-17497919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               79, 57
               

               Conread position:
               368-588
               

               Cow position:
               chrX:29509393-29509619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               24, 39
               

               Conread position:
               369-589
               

               Cow position:
               chrX:40648030-40647801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 52
               

               Conread position:
               370-502
               

               Cow position:
               chrX:16348521-16348658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               44, 54
               

               Conread position:
               370-532
               

               Cow position:
               chrX:4403354-4403195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               78, 51
               

               Conread position:
               370-573
               

               Cow position:
               chrX:36723046-36723252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 38
               

               Conread position:
               370-585
               

               Cow position:
               chrX:37750211-37750426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               74, 134
               

               Conread position:
               370-588
               

               Cow position:
               chrX:18999931-18999713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               76, 47
               

               Conread position:
               370-590
               

               Cow position:
               chrX:14925043-14924822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               78, 20
               

               Conread position:
               370-590
               

               Cow position:
               chrX:28835859-28836079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               72, 113
               

               Conread position:
               370-591
               

               Cow position:
               chrX:29563326-29563549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               37, 117
               

               Conread position:
               371-586
               

               Cow position:
               chrX:22387204-22387421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               73, 41
               

               Conread position:
               371-589
               

               Cow position:
               chrX:47756886-47757105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               78, 44
               

               Conread position:
               371-590
               

               Cow position:
               chrX:37119638-37119422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 46
               

               Conread position:
               372-574
               

               Cow position:
               chrX:28157542-28157333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               6, 50
               

               Conread position:
               372-576
               

               Cow position:
               chrX:6414088-6413881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               39, 55
               

               Conread position:
               372-590
               

               Cow position:
               chrX:32127951-32128158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               127, 45
               

               Conread position:
               372-590
               

               Cow position:
               chrX:34991077-34990863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               74, 139
               

               Conread position:
               372-590
               

               Cow position:
               chrX:35542936-35542714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               77, 50
               

               Conread position:
               372-590
               

               Cow position:
               chrX:40567639-40567422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               76, 45
               

               Conread position:
               372-590
               

               Cow position:
               chrX:43049384-43049167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               169, 40
               

               Conread position:
               373-542
               

               Cow position:
               chrX:5118462-5118631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               74, 52
               

               Conread position:
               373-569
               

               Cow position:
               chrX:29056158-29055963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               373-588
               

               Cow position:
               chrX:4768780-4768575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               73, 5
               

               Conread position:
               373-588
               

               Cow position:
               chrX:27516570-27516357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               47, 59
               

               Conread position:
               373-588
               

               Cow position:
               chrX:44834766-44834991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               373-590
               

               Cow position:
               chrX:12116087-12115862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               76, 35
               

               Conread position:
               373-590
               

               Cow position:
               chrX:47379427-47379644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               76, 39
               

               Conread position:
               374-588
               

               Cow position:
               chrX:10306714-10306495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               75, 38
               

               Conread position:
               374-588
               

               Cow position:
               chrX:48800573-48800361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               100, 47
               

               Conread position:
               374-590
               

               Cow position:
               chrX:23970418-23970211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               41, 48
               

               Conread position:
               374-590
               

               Cow position:
               chrX:38006727-38006945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               66, 47
               

               Conread position:
               374-590
               

               Cow position:
               chrX:41199145-41198927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               75, 48
               

               Conread position:
               375-526
               

               Cow position:
               chrX:32747722-32747570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               23, 46
               

               Conread position:
               375-582
               

               Cow position:
               chrX:1503377-1503169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               74, 136
               

               Conread position:
               375-588
               

               Cow position:
               chrX:11581971-11581759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               134, 41
               

               Conread position:
               375-590
               

               Cow position:
               chrX:10123315-10123522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               73, 51
               

               Conread position:
               375-590
               

               Cow position:
               chrX:30420902-30421117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               166, 32
               

               Conread position:
               375-590
               

               Cow position:
               chrX:30832814-30833023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               71, 42
               

               Conread position:
               376-550
               

               Cow position:
               chrX:27270004-27269833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               376-581
               

               Cow position:
               chrX:14003609-14003813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               168, 46
               

               Conread position:
               377-568
               

               Cow position:
               chrX:35969050-35969238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               67, 44
               

               Conread position:
               377-588
               

               Cow position:
               chrX:45875034-45874823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               377-590
               

               Cow position:
               chrX:3653797-3653586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 40
               

               Conread position:
               377-590
               

               Cow position:
               chrX:9997298-9997511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               60, 44
               

               Conread position:
               377-590
               

               Cow position:
               chrX:19015473-19015265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               166
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               39, 74
               

               Conread position:
               377-590
               

               Cow position:
               chrX:26286017-26285802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               77, 40
               

               Conread position:
               377-590
               

               Cow position:
               chrX:41743950-41743735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               377-594
               

               Cow position:
               chrX:41790407-41790626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               72, 34
               

               Conread position:
               378-583
               

               Cow position:
               chrX:14973706-14973903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               66, 35
               

               Conread position:
               378-590
               

               Cow position:
               chrX:17908253-17908461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               167
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               73, 41
               

               Conread position:
               379-590
               

               Cow position:
               chrX:10096066-10095849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               70, 54
               

               Conread position:
               379-590
               

               Cow position:
               chrX:38439515-38439297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               65, 134
               

               Conread position:
               380-589
               

               Cow position:
               chrX:37048548-37048756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               64, 26
               

               Conread position:
               380-590
               

               Cow position:
               chrX:2383518-2383311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               69, 37
               

               Conread position:
               381-590
               

               Cow position:
               chrX:31252449-31252240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               66, 37
               

               Conread position:
               382-590
               

               Cow position:
               chrX:45015607-45015409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 39
               

               Conread position:
               383-588
               

               Cow position:
               chrX:44053290-44053083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               66, 39
               

               Conread position:
               383-590
               

               Cow position:
               chrX:22813098-22812883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               385-550
               

               Cow position:
               chrX:37986259-37986096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 79
               

               Conread position:
               388-590
               

               Cow position:
               chrX:23497642-23497842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               166
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               61, 34
               

               Conread position:
               391-590
               

               Cow position:
               chrX:20583044-20582853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               24, 35
               

               Conread position:
               400-590
               

               Cow position:
               chrX:35284638-35284446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               13, 161
               

               Conread position:
               400-590
               

               Cow position:
               chrX:42338936-42339113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               402-590
               

               Cow position:
               chrX:13265611-13265797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               46, 109
               

               Conread position:
               403-590
               

               Cow position:
               chrX:31256877-31256690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               32, 108
               

               Conread position:
               404-590
               

               Cow position:
               chrX:35409670-35409488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               47, 17
               

               Conread position:
               405-590
               

               Cow position:
               chrX:35610000-35609809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               406-588
               

               Cow position:
               chrX:1505718-1505537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               410-590
               

               Cow position:
               chrX:42381095-42381277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               19, 123
               

               Conread position:
               412-585
               

               Cow position:
               chrX:46315374-46315553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               414-590
               

               Cow position:
               chrX:877032-877201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               422-590
               

               Cow position:
               chrX:19019111-19019288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               17, 121
               

               Conread position:
               423-590
               

               Cow position:
               chrX:7336821-7336649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               424-589
               

               Cow position:
               chrX:21665602-21665770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               424-590
               

               Cow position:
               chrX:4750313-4750478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               23, 9
               

               Conread position:
               425-586
               

               Cow position:
               chrX:10252192-10252356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               36, 88
               

               Conread position:
               425-590
               

               Cow position:
               chrX:36283344-36283168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               431-588
               

               Cow position:
               chrX:13177483-13177640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               16, 40
               

               Conread position:
               432-588
               

               Cow position:
               chrX:40452225-40452388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               20, 81
               

               Conread position:
               432-589
               

               Cow position:
               chrX:27514853-27514692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               69, 26
               

               Conread position:
               432-590
               

               Cow position:
               chrX:7513494-7513337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               432-590
               

               Cow position:
               chrX:15545876-15545717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               16, 140
               

               Conread position:
               433-590
               

               Cow position:
               chrX:33020467-33020308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               15, 52
               

               Conread position:
               436-590
               

               Cow position:
               chrX:24201167-24201009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               13, 78
               

               Conread position:
               437-578
               

               Cow position:
               chrX:35273331-35273187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               5, 41
               

               Conread position:
               437-588
               

               Cow position:
               chrX:35387926-35388081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               5, 73
               

               Conread position:
               440-590
               

               Cow position:
               chrX:33855261-33855410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               66, 75
               

               Conread position:
               442-589
               

               Cow position:
               chrX:2206580-2206720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               443-588
               

               Cow position:
               chrX:25411810-25411661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               56, 72
               

               Conread position:
               443-588
               

               Cow position:
               chrX:27145592-27145447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               143, 66
               

               Conread position:
               443-590
               

               Cow position:
               chrX:32020150-32020299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               443-590
               

               Cow position:
               chrX:38967617-38967473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               443-594
               

               Cow position:
               chrX:24424419-24424569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               98, 67
               

               Conread position:
               445-590
               

               Cow position:
               chrX:16541704-16541855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               445-594
               

               Cow position:
               chrX:48684258-48684404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 100
               

               Conread position:
               447-589
               

               Cow position:
               chrX:46429893-46430034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               454-590
               

               Cow position:
               chrX:29770213-29770356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               464-582
               

               Cow position:
               chrX:41271259-41271377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               464-590
               

               Cow position:
               chrX:16324016-16324141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               42, 71
               

               Conread position:
               464-590
               

               Cow position:
               chrX:25036747-25036877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               464-590
               

               Cow position:
               chrX:42855363-42855231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               466-590
               

               Cow position:
               chrX:6640076-6639948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               467-590
               

               Cow position:
               chrX:46672659-46672783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               468-590
               

               Cow position:
               chrX:13191600-13191721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               474-588
               

               Cow position:
               chrX:48536724-48536841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               70, 35
               
Show alignments to all cow chromosomes.
Conread position:	278-590
Cow position:	chrX:48035562-48035250 (view UCSC Genome Browser custom track)
Alignm length:	326
Alignm identity:	223
Alignm E-value:	6e-29
Alignm gaps (pig, cow):	27, 21
Conread position:	308-588
Cow position:	chrX:36249756-36250037 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	161
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	140, 126
Conread position:	322-586
Cow position:	chrX:35268952-35268714 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	203
Alignm E-value:	7.00005e-41
Alignm gaps (pig, cow):	5, 0
Conread position:	331-499
Cow position:	chrX:36514809-36514981 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	131
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	24, 7
Conread position:	337-589
Cow position:	chrX:15147119-15147363 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	191
Alignm E-value:	8.99634e-43
Alignm gaps (pig, cow):	162, 8
Conread position:	337-590
Cow position:	chrX:7695827-7695582 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	186
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	114, 80
Conread position:	338-590
Cow position:	chrX:41166888-41167142 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	202
Alignm E-value:	0
Alignm gaps (pig, cow):	111, 17
Conread position:	341-542
Cow position:	chrX:5919564-5919367 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	139
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	73, 81
Conread position:	343-542
Cow position:	chrX:48243396-48243590 (view UCSC Genome Browser custom track)
Alignm length:	204
Alignm identity:	142
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	101, 78
Conread position:	343-590
Cow position:	chrX:41238282-41238543 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	198
Alignm E-value:	5e-37
Alignm gaps (pig, cow):	10, 68
Conread position:	347-525
Cow position:	chrX:44873492-44873673 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	130
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	93, 11
Conread position:	347-588
Cow position:	chrX:7509209-7508964 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	170
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	100, 74
Conread position:	347-590
Cow position:	chrX:4043798-4044028 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	186
Alignm E-value:	8.99634e-43
Alignm gaps (pig, cow):	40, 0
Conread position:	348-500
Cow position:	chrX:20881874-20882025 (view UCSC Genome Browser custom track)
Alignm length:	155
Alignm identity:	121
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	100, 65
Conread position:	348-539
Cow position:	chrX:19003362-19003174 (view UCSC Genome Browser custom track)
Alignm length:	196
Alignm identity:	152
Alignm E-value:	4e-35
Alignm gaps (pig, cow):	96, 65
Conread position:	348-556
Cow position:	chrX:11614763-11614556 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	165
Alignm E-value:	7.00005e-41
Alignm gaps (pig, cow):	96, 69
Conread position:	348-586
Cow position:	chrX:37836651-37836414 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	175
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	101, 71
Conread position:	348-589
Cow position:	chrX:5900531-5900281 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	190
Alignm E-value:	9e-33
Alignm gaps (pig, cow):	100, 61
Conread position:	348-590
Cow position:	chrX:7722057-7721807 (view UCSC Genome Browser custom track)
Alignm length:	252
Alignm identity:	187
Alignm E-value:	8.99634e-43
Alignm gaps (pig, cow):	92, 165
Conread position:	349-492
Cow position:	chrX:39220143-39220000 (view UCSC Genome Browser custom track)
Alignm length:	147
Alignm identity:	113
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	99, 68