• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Spl1-SPL010035C03
        

               
Conread position:
               
9-356
               

               
Cow position:
               
chr28:5904858-5904527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
11-376
               

               
Cow position:
               
chr28:13176529-13176907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
45, 235
               

               
Conread position:
               
79-376
               

               
Cow position:
               
chr28:18462541-18462840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
91-254
               

               
Cow position:
               
chr28:12672407-12672572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
91-379
               

               
Cow position:
               
chr28:14934016-14933730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
64, 6
               

               
Conread position:
               
95-266
               

               
Cow position:
               
chr28:3726942-3726760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
95-356
               

               
Cow position:
               
chr28:13865900-13865637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
95-357
               

               
Cow position:
               
chr28:7512526-7512801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
26, 6
               

               
Conread position:
               
95-384
               

               
Cow position:
               
chr28:751280-750988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
96-357
               

               
Cow position:
               
chr28:26103759-26103506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
38, 5
               

               
Conread position:
               
97-376
               

               
Cow position:
               
chr28:2814453-2814727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
99-357
               

               
Cow position:
               
chr28:9285317-9285587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
100-357
               

               
Cow position:
               
chr28:7267894-7268145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
101-357
               

               
Cow position:
               
chr28:12951470-12951223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr28:5771419-5771141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 167
               

               
Conread position:
               
102-290
               

               
Cow position:
               
chr28:18369957-18370163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
102-376
               

               
Cow position:
               
chr28:7503897-7503611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
102-383
               

               
Cow position:
               
chr28:15063291-15063575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
103-376
               

               
Cow position:
               
chr28:7684651-7684906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
104-376
               

               
Cow position:
               
chr28:15008209-15007936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
105-244
               

               
Cow position:
               
chr28:32174671-32174528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
106-286
               

               
Cow position:
               
chr28:19262543-19262727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
106-355
               

               
Cow position:
               
chr28:18591315-18591062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
106-376
               

               
Cow position:
               
chr28:7144835-7144560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
106-376
               

               
Cow position:
               
chr28:25763066-25762801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
106-379
               

               
Cow position:
               
chr28:21502436-21502163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
110-210
               

               
Cow position:
               
chr28:17012253-17012355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
110-327
               

               
Cow position:
               
chr28:4016572-4016360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
110-333
               

               
Cow position:
               
chr28:11866625-11866855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
43, 116
               

               
Conread position:
               
110-357
               

               
Cow position:
               
chr28:25727416-25727168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
110-377
               

               
Cow position:
               
chr28:21103784-21104076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
14, 279
               

               
Conread position:
               
111-255
               

               
Cow position:
               
chr28:3484619-3484465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
111-282
               

               
Cow position:
               
chr28:3449342-3449165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
44, 144
               

               
Conread position:
               
112-320
               

               
Cow position:
               
chr28:21363785-21363574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
112-325
               

               
Cow position:
               
chr28:25728235-25728028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
112-334
               

               
Cow position:
               
chr28:17235694-17235915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr28:1838031-1837781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr28:10529452-10529692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr28:14234996-14234744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr28:14649388-14649120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr28:7697940-7698214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr28:18354290-18354550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
112-395
               

               
Cow position:
               
chr28:31649124-31648826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chr28:19133816-19133576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr28:21598218-21598462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 150
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr28:21873794-21873564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
130, 37
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chr28:23007696-23007935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
116-374
               

               
Cow position:
               
chr28:7607270-7607001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
116-374
               

               
Cow position:
               
chr28:25806607-25806359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
39, 150
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr28:4282456-4282720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
39, 127
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr28:10641994-10642246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 37
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr28:11380006-11380271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr28:19025971-19026231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 148
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr28:20313311-20313047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr28:23621572-23621319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr28:15601311-15601033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 192
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr28:15677920-15677664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
117-234
               

               
Cow position:
               
chr28:8147830-8147953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
117-259
               

               
Cow position:
               
chr28:3011236-3011389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
117-280
               

               
Cow position:
               
chr28:19564195-19564364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 111
               

               
Conread position:
               
117-289
               

               
Cow position:
               
chr28:9812311-9812142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
117-292
               

               
Cow position:
               
chr28:4355580-4355404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
117-297
               

               
Cow position:
               
chr28:23447791-23447980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 171
               

               
Conread position:
               
117-310
               

               
Cow position:
               
chr28:21046543-21046730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr28:32365877-32365675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
117-328
               

               
Cow position:
               
chr28:28903630-28903847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
117-331
               

               
Cow position:
               
chr28:2752461-2752684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 131
               

               
Conread position:
               
117-331
               

               
Cow position:
               
chr28:22339027-22338820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
117-337
               

               
Cow position:
               
chr28:616419-616203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
117-339
               

               
Cow position:
               
chr28:26982705-26982938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr28:4881207-4881438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr28:10669617-10669382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
117-346
               

               
Cow position:
               
chr28:10845141-10844920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
117-348
               

               
Cow position:
               
chr28:5224740-5224512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
117-351
               

               
Cow position:
               
chr28:28631767-28631519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
117-353
               

               
Cow position:
               
chr28:34230261-34230024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
117-354
               

               
Cow position:
               
chr28:17637835-17638073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
117-355
               

               
Cow position:
               
chr28:18791049-18790803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
117-355
               

               
Cow position:
               
chr28:26719376-26719152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chr28:5236571-5236811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chr28:6861987-6861747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chr28:17288249-17288016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 134
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chr28:26533576-26533334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:3408185-3408427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:4841360-4841606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:5826983-5826739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 198
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:7228352-7228595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:8408767-8408530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 133
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:10615913-10616161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:12598372-12598136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
190, 68
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:16252823-16253067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:22321452-22321212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 40
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:23793278-23793512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:25283233-25282995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr28:29434395-29434634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
117-373
               

               
Cow position:
               
chr28:8787573-8787320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
117-373
               

               
Cow position:
               
chr28:18934487-18934230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
117-374
               

               
Cow position:
               
chr28:2960797-2961051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:3078648-3078906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:5792741-5792475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 199
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:13267826-13267553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 155
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:19079812-19080076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:21380914-21380649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:23410292-23410552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr28:23676171-23675915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr28:3143842-3144121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr28:11786684-11786939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr28:16085358-16085095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr28:26743659-26743391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 182
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr28:27218356-27218091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr28:31109971-31110236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 136
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr28:15263681-15263955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:4058015-4057754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:11759530-11759769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
252, 32
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:13607919-13607653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:19222118-19222377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
53, 128
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:25249387-25249123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 135
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:25399905-25399658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 91
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr28:26685150-26684884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
117-382
               

               
Cow position:
               
chr28:11817934-11818194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
117-387
               

               
Cow position:
               
chr28:23460180-23459902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
118-262
               

               
Cow position:
               
chr28:5166800-5166647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
118-301
               

               
Cow position:
               
chr28:10057555-10057745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
118-322
               

               
Cow position:
               
chr28:4643738-4643939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
118-333
               

               
Cow position:
               
chr28:22279168-22279378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
118-337
               

               
Cow position:
               
chr28:24966418-24966203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
118-340
               

               
Cow position:
               
chr28:4834812-4835038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 138
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr28:27313700-27313948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
118-352
               

               
Cow position:
               
chr28:19055046-19054812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
118-354
               

               
Cow position:
               
chr28:12758468-12758715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:12430638-12430400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:12946981-12946728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:16243735-16243968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:16687059-16686823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:18625266-18625013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:21868489-21868242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:25424262-25424512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:26340364-26340127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:29416684-29416926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr28:34442726-34442973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 147
               

               
Conread position:
               
118-374
               

               
Cow position:
               
chr28:5204227-5203973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:4914059-4914330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:7751268-7751529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:9099968-9099706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:11752107-11752373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:20124816-20124557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
37, 147
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:22346053-22345791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:24367910-24368179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr28:33052068-33051792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
118-377
               

               
Cow position:
               
chr28:10681789-10682047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
118-377
               

               
Cow position:
               
chr28:11585170-11585439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 128
               

               
Conread position:
               
118-378
               

               
Cow position:
               
chr28:10745246-10744979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 152
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:3023881-3024144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:4588132-4587868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
37, 147
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:9426318-9426574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 123
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:16109971-16109712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:16346499-16346758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:22485285-22485016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:25056998-25056740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr28:25071151-25070884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
118-382
               

               
Cow position:
               
chr28:3256830-3256558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
118-383
               

               
Cow position:
               
chr28:14151254-14150998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
251, 26
               

               
Conread position:
               
118-390
               

               
Cow position:
               
chr28:5437053-5437335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
119-292
               

               
Cow position:
               
chr28:30746699-30746872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
119-303
               

               
Cow position:
               
chr28:7008947-7009129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 123
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr28:20409423-20409216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
33, 145
               

               
Conread position:
               
119-334
               

               
Cow position:
               
chr28:18760017-18760229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 134
               

               
Conread position:
               
119-337
               

               
Cow position:
               
chr28:23724431-23724645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
119-339
               

               
Cow position:
               
chr28:10999638-10999860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
119-355
               

               
Cow position:
               
chr28:3714832-3714594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
119-355
               

               
Cow position:
               
chr28:5817873-5817639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr28:14657728-14657491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr28:30303168-30303404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr28:34430392-34430636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr28:3914748-3914481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 153
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr28:7723360-7723624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 146
               

               
Conread position:
               
119-377
               

               
Cow position:
               
chr28:6059439-6059702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
119-378
               

               
Cow position:
               
chr28:5144490-5144755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
119-378
               

               
Cow position:
               
chr28:21355262-21354993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr28:8347762-8347503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr28:17316896-17316627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
119-383
               

               
Cow position:
               
chr28:4307866-4308134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 181
               

               
Conread position:
               
120-297
               

               
Cow position:
               
chr28:27161296-27161479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
120-323
               

               
Cow position:
               
chr28:14720754-14720953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 39
               

               
Conread position:
               
120-346
               

               
Cow position:
               
chr28:4138641-4138868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
120-356
               

               
Cow position:
               
chr28:2899019-2898787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
120-357
               

               
Cow position:
               
chr28:5931386-5931144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
120-400
               

               
Cow position:
               
chr28:25459564-25459271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr28:18717101-18717332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr28:26922339-26922574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
34, 143
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr28:28765874-28766119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
40, 99
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr28:34877939-34878182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
34, 5
               

               
Conread position:
               
121-376
               

               
Cow position:
               
chr28:28076390-28076636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr28:26269360-26269097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
122-328
               

               
Cow position:
               
chr28:18186584-18186379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr28:4809807-4809596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
122-356
               

               
Cow position:
               
chr28:26614901-26614680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
122-357
               

               
Cow position:
               
chr28:16204306-16204542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
122-373
               

               
Cow position:
               
chr28:7865355-7865098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
122-376
               

               
Cow position:
               
chr28:9636429-9636685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr28:15043833-15044086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 143
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr28:30293561-30293821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
86, 170
               

               
Conread position:
               
122-379
               

               
Cow position:
               
chr28:11426513-11426777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
33, 143
               

               
Conread position:
               
123-357
               

               
Cow position:
               
chr28:22371654-22371888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
124-280
               

               
Cow position:
               
chr28:1538192-1538036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
124-352
               

               
Cow position:
               
chr28:5684729-5684505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
124-355
               

               
Cow position:
               
chr28:5552912-5553136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
124-358
               

               
Cow position:
               
chr28:2737780-2738022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
124-376
               

               
Cow position:
               
chr28:2862894-2862633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
124-376
               

               
Cow position:
               
chr28:8681813-8682079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 173
               

               
Conread position:
               
124-376
               

               
Cow position:
               
chr28:11884495-11884751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
124-379
               

               
Cow position:
               
chr28:13474326-13474074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 140
               

               
Conread position:
               
125-376
               

               
Cow position:
               
chr28:33163434-33163696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 145
               

               
Conread position:
               
126-351
               

               
Cow position:
               
chr28:5128705-5128933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
127-375
               

               
Cow position:
               
chr28:10053306-10053566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
128-358
               

               
Cow position:
               
chr28:12624497-12624257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
128-368
               

               
Cow position:
               
chr28:31248864-31248626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
128-376
               

               
Cow position:
               
chr28:24646561-24646312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
128-379
               

               
Cow position:
               
chr28:12048687-12048931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
128-379
               

               
Cow position:
               
chr28:19222580-19222829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
129-330
               

               
Cow position:
               
chr28:118029-118238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
129-333
               

               
Cow position:
               
chr28:19024166-19023947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
129-354
               

               
Cow position:
               
chr28:4880243-4880470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
129-357
               

               
Cow position:
               
chr28:15374802-15375035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
28, 113
               

               
Conread position:
               
129-375
               

               
Cow position:
               
chr28:5773657-5773412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
129-387
               

               
Cow position:
               
chr28:4022409-4022142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 139
               

               
Conread position:
               
130-377
               

               
Cow position:
               
chr28:10606604-10606849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
7, 132
               

               
Conread position:
               
131-358
               

               
Cow position:
               
chr28:6307911-6307681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr28:22739811-22739572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 135
               

               
Conread position:
               
133-356
               

               
Cow position:
               
chr28:16386489-16386714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
24, 135
               

               
Conread position:
               
133-357
               

               
Cow position:
               
chr28:10478326-10478552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chr28:10900834-10900610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 131
               

               
Conread position:
               
135-376
               

               
Cow position:
               
chr28:9390348-9390593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
136-376
               

               
Cow position:
               
chr28:22170695-22170946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
137-357
               

               
Cow position:
               
chr28:7590168-7590391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 6
               

               
Conread position:
               
138-379
               

               
Cow position:
               
chr28:17029703-17029947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
5, 117
               

               
Conread position:
               
139-357
               

               
Cow position:
               
chr28:3746208-3745992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
139-357
               

               
Cow position:
               
chr28:5074496-5074714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
140-376
               

               
Cow position:
               
chr28:11047602-11047358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
145-278
               

               
Cow position:
               
chr28:5838544-5838407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
145-354
               

               
Cow position:
               
chr28:8935932-8935727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
145-357
               

               
Cow position:
               
chr28:4070972-4070759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr28:6577646-6577427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr28:11422808-11423032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr28:26784458-26784695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
145-379
               

               
Cow position:
               
chr28:23840209-23839977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 144
               

               
Conread position:
               
146-379
               

               
Cow position:
               
chr28:5805514-5805293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
146-397
               

               
Cow position:
               
chr28:8656742-8656988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
147-357
               

               
Cow position:
               
chr28:5658547-5658344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
149-377
               

               
Cow position:
               
chr28:16370083-16370305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
210, 29
               

               
Conread position:
               
150-354
               

               
Cow position:
               
chr28:10533939-10534137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
150-357
               

               
Cow position:
               
chr28:21844951-21844746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
152-357
               

               
Cow position:
               
chr28:11827490-11827284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
157-388
               

               
Cow position:
               
chr28:3105242-3104998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
161-358
               

               
Cow position:
               
chr28:16441358-16441177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
162-357
               

               
Cow position:
               
chr28:7980436-7980628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 49
               

               
Conread position:
               
165-356
               

               
Cow position:
               
chr28:2124410-2124222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
165-356
               

               
Cow position:
               
chr28:25596608-25596424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
167-357
               

               
Cow position:
               
chr28:16363988-16364178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
167-357
               

               
Cow position:
               
chr28:34082038-34082231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
167-376
               

               
Cow position:
               
chr28:6051713-6051504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 83
               

               
Conread position:
               
167-376
               

               
Cow position:
               
chr28:33036494-33036694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
168-379
               

               
Cow position:
               
chr28:13356597-13356817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 156
               

               
Conread position:
               
168-382
               

               
Cow position:
               
chr28:19295381-19295595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
170-357
               

               
Cow position:
               
chr28:5188428-5188611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
171-384
               

               
Cow position:
               
chr28:24996614-24996825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 6
               

               
Conread position:
               
173-357
               

               
Cow position:
               
chr28:25700899-25701070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
174-376
               

               
Cow position:
               
chr28:2279693-2279894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 40
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr28:10888633-10888455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
177-357
               

               
Cow position:
               
chr28:4884294-4884476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
177-370
               

               
Cow position:
               
chr28:9108416-9108220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
177-376
               

               
Cow position:
               
chr28:11451494-11451695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
177-377
               

               
Cow position:
               
chr28:13241858-13242055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
177-390
               

               
Cow position:
               
chr28:23776015-23775802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
179-357
               

               
Cow position:
               
chr28:8348684-8348862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
180-376
               

               
Cow position:
               
chr28:2819725-2819530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
186-379
               

               
Cow position:
               
chr28:17738113-17738311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
187-357
               

               
Cow position:
               
chr28:2905535-2905371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
188-323
               

               
Cow position:
               
chr28:26264765-26264628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
188-379
               

               
Cow position:
               
chr28:3077948-3077761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
188-379
               

               
Cow position:
               
chr28:15272303-15272493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
188-379
               

               
Cow position:
               
chr28:29806226-29806435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
206-376
               

               
Cow position:
               
chr28:13371236-13371396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
206-376
               

               
Cow position:
               
chr28:23231128-23231295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
207-379
               

               
Cow position:
               
chr28:20759984-20760156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
208-357
               

               
Cow position:
               
chr28:2888366-2888220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
211-347
               

               
Cow position:
               
chr28:3161138-3161268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
212-357
               

               
Cow position:
               
chr28:32813063-32813208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
220-376
               

               
Cow position:
               
chr28:8372397-8372242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
222-379
               

               
Cow position:
               
chr28:3480193-3480036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
147, 38
               

               
Conread position:
               
230-353
               

               
Cow position:
               
chr28:10699819-10699696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
230-376
               

               
Cow position:
               
chr28:10296112-10295961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
251-379
               

               
Cow position:
               
chr28:25498603-25498736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
257-356
               

               
Cow position:
               
chr28:8628886-8628985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
257-376
               

               
Cow position:
               
chr28:16879383-16879496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
257-383
               

               
Cow position:
               
chr28:5366237-5366365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
468-700
               

               
Cow position:
               
chr28:26949562-26949334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 74
               
Show alignments to all cow chromosomes.