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Cow genome map

           
Conread name:
           
Spl1-SPL010035C03
        

               
Conread position:
               
1-309
               

               
Cow position:
               
chr3:27212495-27212172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 271
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr3:57553721-57554085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
65, 264
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr3:14717908-14717557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr3:7408607-7408247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 263
               

               
Conread position:
               
11-376
               

               
Cow position:
               
chr3:81277585-81277960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
33-376
               

               
Cow position:
               
chr3:17952740-17952399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
90-388
               

               
Cow position:
               
chr3:76015327-76015028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
92-313
               

               
Cow position:
               
chr3:74079607-74079833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
63, 175
               

               
Conread position:
               
92-357
               

               
Cow position:
               
chr3:8924072-8923805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
92-357
               

               
Cow position:
               
chr3:66708036-66708310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
92-379
               

               
Cow position:
               
chr3:62998977-62999266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
95-375
               

               
Cow position:
               
chr3:69849482-69849758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
95-379
               

               
Cow position:
               
chr3:72019145-72018858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 18
               

               
Conread position:
               
97-378
               

               
Cow position:
               
chr3:2025222-2024924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 182
               

               
Conread position:
               
98-376
               

               
Cow position:
               
chr3:65237047-65236768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
98-379
               

               
Cow position:
               
chr3:54434999-54434713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
99-231
               

               
Cow position:
               
chr3:3656536-3656393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
99-252
               

               
Cow position:
               
chr3:28323201-28323044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
99-356
               

               
Cow position:
               
chr3:33252867-33253118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
99-357
               

               
Cow position:
               
chr3:12675019-12675274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
99-376
               

               
Cow position:
               
chr3:16333819-16333549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
99-376
               

               
Cow position:
               
chr3:52147629-52147937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 163
               

               
Conread position:
               
99-376
               

               
Cow position:
               
chr3:68342224-68342511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
100-278
               

               
Cow position:
               
chr3:2850873-2851054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 100
               

               
Conread position:
               
100-376
               

               
Cow position:
               
chr3:64172463-64172188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
100-379
               

               
Cow position:
               
chr3:25690818-25690524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
100-379
               

               
Cow position:
               
chr3:38497959-38497691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
100-394
               

               
Cow position:
               
chr3:25755045-25754764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 164
               

               
Conread position:
               
101-258
               

               
Cow position:
               
chr3:1517492-1517658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 98
               

               
Conread position:
               
101-291
               

               
Cow position:
               
chr3:23920409-23920602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
101-355
               

               
Cow position:
               
chr3:5374352-5374097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 161
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr3:3985346-3985073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr3:19708084-19708358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
53, 164
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr3:39171462-39171741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr3:72131274-72131554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
101-389
               

               
Cow position:
               
chr3:51234072-51234366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
20, 169
               

               
Conread position:
               
102-320
               

               
Cow position:
               
chr3:14598966-14598745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
102-358
               

               
Cow position:
               
chr3:62884227-62883964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
52, 132
               

               
Conread position:
               
102-369
               

               
Cow position:
               
chr3:55991845-55992122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
102-376
               

               
Cow position:
               
chr3:72437-72158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
102-376
               

               
Cow position:
               
chr3:51146647-51146923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
102-379
               

               
Cow position:
               
chr3:6873222-6873506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
102-383
               

               
Cow position:
               
chr3:44861288-44861573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
103-243
               

               
Cow position:
               
chr3:16254817-16254953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
103-352
               

               
Cow position:
               
chr3:45648154-45647906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 153
               

               
Conread position:
               
104-376
               

               
Cow position:
               
chr3:54862395-54862679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 53
               

               
Conread position:
               
106-287
               

               
Cow position:
               
chr3:54100711-54100891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
106-306
               

               
Cow position:
               
chr3:26982073-26981877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
106-324
               

               
Cow position:
               
chr3:57760513-57760293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr3:55733964-55733713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
106-347
               

               
Cow position:
               
chr3:55970522-55970276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
106-357
               

               
Cow position:
               
chr3:70334680-70334939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 194
               

               
Conread position:
               
106-376
               

               
Cow position:
               
chr3:17895858-17895597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
106-379
               

               
Cow position:
               
chr3:79884471-79884747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
106-381
               

               
Cow position:
               
chr3:31225451-31225186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
106-382
               

               
Cow position:
               
chr3:55445375-55445102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
107-376
               

               
Cow position:
               
chr3:5899840-5899568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 162
               

               
Conread position:
               
107-382
               

               
Cow position:
               
chr3:48363090-48362819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
108-321
               

               
Cow position:
               
chr3:7940540-7940758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 148
               

               
Conread position:
               
109-355
               

               
Cow position:
               
chr3:48578850-48578605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
109-357
               

               
Cow position:
               
chr3:13329762-13330011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
110-260
               

               
Cow position:
               
chr3:24468370-24468525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
110-313
               

               
Cow position:
               
chr3:66883929-66884135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
110-357
               

               
Cow position:
               
chr3:75057119-75057357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
110-358
               

               
Cow position:
               
chr3:59588525-59588280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
110-375
               

               
Cow position:
               
chr3:58540517-58540789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
110-377
               

               
Cow position:
               
chr3:76172654-76172922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
111-310
               

               
Cow position:
               
chr3:68587033-68586831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
111-312
               

               
Cow position:
               
chr3:4050203-4050002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
111-357
               

               
Cow position:
               
chr3:49119015-49119269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 155
               

               
Conread position:
               
111-375
               

               
Cow position:
               
chr3:59101841-59101576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
111-376
               

               
Cow position:
               
chr3:27532644-27532919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
112-292
               

               
Cow position:
               
chr3:31850364-31850543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 142
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr3:71238484-71238284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
112-306
               

               
Cow position:
               
chr3:74502316-74502509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chr3:55819767-55819558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
112-313
               

               
Cow position:
               
chr3:57274069-57273872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 50
               

               
Conread position:
               
112-318
               

               
Cow position:
               
chr3:3638194-3637988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
42, 151
               

               
Conread position:
               
112-318
               

               
Cow position:
               
chr3:77582118-77581913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 146
               

               
Conread position:
               
112-325
               

               
Cow position:
               
chr3:53240269-53240066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
112-340
               

               
Cow position:
               
chr3:16656482-16656702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
112-340
               

               
Cow position:
               
chr3:68881108-68881337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
112-341
               

               
Cow position:
               
chr3:11063383-11063156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
112-354
               

               
Cow position:
               
chr3:12287242-12287000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
57, 114
               

               
Conread position:
               
112-356
               

               
Cow position:
               
chr3:27940130-27940365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:27544326-27544567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:29807476-29807224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:48241627-48241383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:52652072-52652312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:53046650-53046895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:83201516-83201766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
112-358
               

               
Cow position:
               
chr3:34937857-34937601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
112-370
               

               
Cow position:
               
chr3:25477815-25477555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
112-372
               

               
Cow position:
               
chr3:8733345-8733591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
112-373
               

               
Cow position:
               
chr3:68708000-68708259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr3:52650519-52650788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 155
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr3:37186836-37186577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr3:61840288-61840031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 154
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr3:75045862-75046129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 160
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr3:82056106-82056374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr3:2506469-2506738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr3:48530646-48530380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr3:57764231-57763966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr3:65800601-65800338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
43, 136
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr3:71430195-71430469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr3:80581671-80581414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
112-377
               

               
Cow position:
               
chr3:59000743-59001005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:17694992-17695267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:34270926-34270670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 136
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:59630500-59630761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:73759507-73759780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
43, 143
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:80081804-80082078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
113-252
               

               
Cow position:
               
chr3:76024515-76024381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
113-376
               

               
Cow position:
               
chr3:15159039-15158784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
115-352
               

               
Cow position:
               
chr3:15752626-15752861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
115-376
               

               
Cow position:
               
chr3:48269871-48269606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
115-376
               

               
Cow position:
               
chr3:78443560-78443820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
116-253
               

               
Cow position:
               
chr3:17235206-17235348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr3:18725639-18725872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr3:56637670-56637429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chr3:7678664-7678433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chr3:54960194-54959952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
116-357
               

               
Cow position:
               
chr3:57624469-57624229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 127
               

               
Conread position:
               
116-358
               

               
Cow position:
               
chr3:54340416-54340653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
116-372
               

               
Cow position:
               
chr3:73764190-73764452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
116-373
               

               
Cow position:
               
chr3:15684916-15685169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:53588378-53588647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:53739180-53739447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 149
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:55124275-55124535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:58285898-58286155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:58865463-58865716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:72676096-72675830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr3:80740571-80740315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr3:27545814-27546093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
54, 254
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr3:50614646-50614381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr3:13301845-13302117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr3:20471359-20471620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
116-379
               

               
Cow position:
               
chr3:75158366-75158104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
116-385
               

               
Cow position:
               
chr3:23091970-23092249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
117-242
               

               
Cow position:
               
chr3:73299085-73298958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
117-246
               

               
Cow position:
               
chr3:3649220-3649350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
117-255
               

               
Cow position:
               
chr3:5366773-5366630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 134
               

               
Conread position:
               
117-255
               

               
Cow position:
               
chr3:70333961-70334105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
117-255
               

               
Cow position:
               
chr3:80468672-80468816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
117-256
               

               
Cow position:
               
chr3:3889563-3889709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
117-257
               

               
Cow position:
               
chr3:59040573-59040424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
117-258
               

               
Cow position:
               
chr3:60389768-60389623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
117-260
               

               
Cow position:
               
chr3:73820365-73820516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
117-264
               

               
Cow position:
               
chr3:34871571-34871418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
117-265
               

               
Cow position:
               
chr3:43727083-43726926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
117-275
               

               
Cow position:
               
chr3:19793586-19793750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
117-276
               

               
Cow position:
               
chr3:76267971-76268139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 144
               

               
Conread position:
               
117-282
               

               
Cow position:
               
chr3:12978613-12978780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
117-283
               

               
Cow position:
               
chr3:29360142-29360304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
117-286
               

               
Cow position:
               
chr3:35153621-35153454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
117-287
               

               
Cow position:
               
chr3:48810641-48810805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
117-292
               

               
Cow position:
               
chr3:81359103-81359286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
117-298
               

               
Cow position:
               
chr3:19792909-19792712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 160
               

               
Conread position:
               
117-306
               

               
Cow position:
               
chr3:81039744-81039933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
117-307
               

               
Cow position:
               
chr3:15751709-15751910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chr3:34669729-34669918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
117-312
               

               
Cow position:
               
chr3:44101972-44101776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
117-313
               

               
Cow position:
               
chr3:49218310-49218509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
117-313
               

               
Cow position:
               
chr3:70632025-70631824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr3:49790808-49791011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
117-318
               

               
Cow position:
               
chr3:38828763-38828568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 40
               

               
Conread position:
               
117-324
               

               
Cow position:
               
chr3:55712444-55712220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 158
               

               
Conread position:
               
117-330
               

               
Cow position:
               
chr3:59621644-59621849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
117-332
               

               
Cow position:
               
chr3:4319715-4319497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
117-333
               

               
Cow position:
               
chr3:35005780-35005563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
39, 138
               

               
Conread position:
               
117-333
               

               
Cow position:
               
chr3:78896651-78896434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
32, 138
               

               
Conread position:
               
117-336
               

               
Cow position:
               
chr3:46006014-46006248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
117-337
               

               
Cow position:
               
chr3:39328404-39328182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
117-339
               

               
Cow position:
               
chr3:45211305-45211075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr3:2198887-2198661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 124
               

               
Conread position:
               
117-340
               

               
Cow position:
               
chr3:20136842-20137074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
117-341
               

               
Cow position:
               
chr3:22907724-22907939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 92
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chr3:42367507-42367724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
117-344
               

               
Cow position:
               
chr3:74134708-74134480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr3:68145839-68146064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
117-349
               

               
Cow position:
               
chr3:19404308-19404093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
117-352
               

               
Cow position:
               
chr3:55106435-55106676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
117-352
               

               
Cow position:
               
chr3:84000617-84000379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
117-354
               

               
Cow position:
               
chr3:11711969-11711718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
117-355
               

               
Cow position:
               
chr3:15051944-15052181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
117-355
               

               
Cow position:
               
chr3:23444884-23445126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chr3:60892629-60892395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 132
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:210323-210085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:1830569-1830801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 43
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:2518535-2518775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:5044809-5045048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:5365681-5365448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 195
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:7566413-7566657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 111
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:9843591-9843345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:11987333-11987092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:12711911-12712161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:15228819-15229057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 181
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:17450935-17451172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 113
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:18686910-18686678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:26920912-26920658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:28898219-28898461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:37041423-37041189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:41328445-41328217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:43233510-43233265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:45881902-45881671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:48252889-48252656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:49382953-49382714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:52017775-52017519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:58767267-58767041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:59451598-59451356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:59474126-59473874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:59691895-59691666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:63316136-63315893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:64280926-64281174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:65969171-65968916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:66609838-66610076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:70401901-70401664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:72473919-72473669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:73709051-73708811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:79292833-79292596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
117-357
               

               
Cow position:
               
chr3:80053537-80053772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 181
               

               
Conread position:
               
117-358
               

               
Cow position:
               
chr3:55947588-55947336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr3:67930179-67930424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
117-374
               

               
Cow position:
               
chr3:5097211-5096949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 153
               

               
Conread position:
               
117-374
               

               
Cow position:
               
chr3:26219047-26219317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
117-374
               

               
Cow position:
               
chr3:30180090-30179828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
36, 153
               

               
Conread position:
               
117-374
               

               
Cow position:
               
chr3:53910112-53909860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
117-375
               

               
Cow position:
               
chr3:5850925-5851185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
117-375
               

               
Cow position:
               
chr3:26904114-26903859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
117-375
               

               
Cow position:
               
chr3:42178161-42177902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
117-375
               

               
Cow position:
               
chr3:82461183-82460928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:8393354-8393089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:15388223-15387954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:17934934-17935180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:23471455-23471725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
39, 139
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:28908199-28908452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:29596394-29596137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:30463168-30463423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:43528228-43528494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:45183829-45184103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 209
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:59515108-59514854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:60597548-60597291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:61171504-61171767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 178
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:61278913-61278649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:63179861-63179611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:69416777-69417045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:71497134-71497402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:73395120-73394859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:83491090-83490819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
117-376
               

               
Cow position:
               
chr3:83921194-83920941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr3:8147663-8147923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr3:37599424-37599676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr3:55085165-55085444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
117-377
               

               
Cow position:
               
chr3:59649261-59649000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 151
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr3:14552879-14552617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr3:14632979-14633246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr3:29507586-29507335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
117-378
               

               
Cow position:
               
chr3:48296705-48296450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:14601707-14601974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:16157680-16157420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:17456264-17456530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:20437652-20437906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:34095957-34096215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:35852467-35852728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:38347197-38346940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 87
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:42423322-42423592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 148
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:46901203-46900934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:49650392-49650119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:53113179-53112907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 151
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:53384276-53384544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:65058702-65058441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:66292172-66292439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:66900729-66901003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr3:72391086-72390820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr3:33698735-33698456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 153
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr3:36671987-36672267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
117-388
               

               
Cow position:
               
chr3:56476686-56476412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
118-294
               

               
Cow position:
               
chr3:26489077-26489261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
118-295
               

               
Cow position:
               
chr3:59035043-59034858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 143
               

               
Conread position:
               
118-302
               

               
Cow position:
               
chr3:26739411-26739603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
118-303
               

               
Cow position:
               
chr3:79092389-79092579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 140
               

               
Conread position:
               
118-304
               

               
Cow position:
               
chr3:1453119-1453307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
118-310
               

               
Cow position:
               
chr3:83707970-83708159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
118-312
               

               
Cow position:
               
chr3:13890480-13890274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
118-317
               

               
Cow position:
               
chr3:53094928-53095138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
118-322
               

               
Cow position:
               
chr3:83797831-83798043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
118-331
               

               
Cow position:
               
chr3:55318894-55319110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
118-332
               

               
Cow position:
               
chr3:21693954-21693728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
118-336
               

               
Cow position:
               
chr3:25945096-25944860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
118-346
               

               
Cow position:
               
chr3:15506452-15506220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
118-351
               

               
Cow position:
               
chr3:21547097-21547334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
118-355
               

               
Cow position:
               
chr3:49460923-49461173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
118-356
               

               
Cow position:
               
chr3:116192-115970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:2680519-2680273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:4457068-4457314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 126
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:31206879-31206634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:38691403-38691644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
26, 150
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:39969860-39970110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:44932519-44932270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 150
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:48851967-48852206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:53572749-53572988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 147
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:55272042-55272281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:55835818-55836067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 144
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:61857512-61857258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:74234189-74233957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
202, 37
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:79207983-79208241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:79220861-79220612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 154
               

               
Conread position:
               
118-357
               

               
Cow position:
               
chr3:80564969-80564722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
118-361
               

               
Cow position:
               
chr3:188875-188617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 158
               

               
Conread position:
               
118-368
               

               
Cow position:
               
chr3:81087633-81087859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
118-371
               

               
Cow position:
               
chr3:49482713-49482963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
118-372
               

               
Cow position:
               
chr3:49327947-49327685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
118-374
               

               
Cow position:
               
chr3:18763893-18763639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
118-374
               

               
Cow position:
               
chr3:59392115-59392365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
118-375
               

               
Cow position:
               
chr3:18185078-18184812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
118-375
               

               
Cow position:
               
chr3:33327712-33327448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 126
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:9641570-9641307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:10347357-10347098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:16752255-16752507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:17957470-17957210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:23448134-23448388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:23877000-23876741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:52608185-52607926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:53270833-53270569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
38, 148
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:56059814-56059550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:68583001-68583260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 80
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:70896047-70895789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:73443086-73443344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
37, 146
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:74500246-74499967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
118-376
               

               
Cow position:
               
chr3:78077188-78076932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
118-378
               

               
Cow position:
               
chr3:31298160-31298420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
118-378
               

               
Cow position:
               
chr3:67929257-67929526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
118-378
               

               
Cow position:
               
chr3:79902499-79902243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:15954082-15954338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:16547669-16547415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:20129938-20129680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:27289942-27289676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 147
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:31056010-31056263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:45524270-45524003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:51604612-51604868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
168, 14
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:53592686-53592961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:54946134-54945864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:57754473-57754745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:60933420-60933154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:61539809-61539535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 143
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:69750707-69750962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:72777241-72776979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:73961694-73961940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
118-379
               

               
Cow position:
               
chr3:79591888-79592150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
118-382
               

               
Cow position:
               
chr3:39661453-39661712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
118-384
               

               
Cow position:
               
chr3:70565735-70566004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
118-393
               

               
Cow position:
               
chr3:74620986-74621271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
118-401
               

               
Cow position:
               
chr3:30008905-30009194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
118-401
               

               
Cow position:
               
chr3:30055454-30055731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
119-254
               

               
Cow position:
               
chr3:15443727-15443870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
119-254
               

               
Cow position:
               
chr3:24935367-24935230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
119-259
               

               
Cow position:
               
chr3:50328617-50328754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
119-260
               

               
Cow position:
               
chr3:80953650-80953500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
119-282
               

               
Cow position:
               
chr3:59884067-59884236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
119-292
               

               
Cow position:
               
chr3:81507109-81507285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
119-323
               

               
Cow position:
               
chr3:63269225-63269023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
119-325
               

               
Cow position:
               
chr3:27696976-27697189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
119-335
               

               
Cow position:
               
chr3:74878587-74878806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
119-340
               

               
Cow position:
               
chr3:60265249-60265457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
119-340
               

               
Cow position:
               
chr3:83215264-83215032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
119-345
               

               
Cow position:
               
chr3:26960586-26960821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 141
               

               
Conread position:
               
119-351
               

               
Cow position:
               
chr3:22887927-22888148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
119-351
               

               
Cow position:
               
chr3:26970815-26970593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:5100770-5100999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:6690002-6689756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:8061131-8060894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 147
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:18393392-18393622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:18459526-18459758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:83815785-83816031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr3:27274533-27274281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
119-374
               

               
Cow position:
               
chr3:59333772-59333516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:2216370-2216102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 150
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:5416218-5416488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:7763658-7763407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:22820574-22820312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:31309352-31309612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:31771684-31771441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:54771009-54770747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:67744626-67744885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:71238156-71237900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 143
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:77271275-77271524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr3:80973357-80973096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
119-377
               

               
Cow position:
               
chr3:51578319-51578581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
119-377
               

               
Cow position:
               
chr3:77365288-77365554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:14263395-14263131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:51033368-51033084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:52863182-52863444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:57577699-57577434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:66375322-66375060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 149
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:81471094-81471361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
119-383
               

               
Cow position:
               
chr3:67704548-67704275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
120-234
               

               
Cow position:
               
chr3:58527389-58527277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
120-303
               

               
Cow position:
               
chr3:30222191-30222002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
36, 140
               

               
Conread position:
               
120-317
               

               
Cow position:
               
chr3:38035589-38035790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
120-339
               

               
Cow position:
               
chr3:15859665-15859891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
120-355
               

               
Cow position:
               
chr3:78945832-78946072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
120-357
               

               
Cow position:
               
chr3:56375-56609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
120-357
               

               
Cow position:
               
chr3:2675030-2674791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
120-357
               

               
Cow position:
               
chr3:4031975-4031730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
35, 148
               

               
Conread position:
               
120-357
               

               
Cow position:
               
chr3:36100840-36100590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 152
               

               
Conread position:
               
120-357
               

               
Cow position:
               
chr3:77188439-77188204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
120-376
               

               
Cow position:
               
chr3:71161801-71161537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
120-376
               

               
Cow position:
               
chr3:74088178-74088431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
120-379
               

               
Cow position:
               
chr3:49231019-49230750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
120-379
               

               
Cow position:
               
chr3:75570450-75570702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
120-387
               

               
Cow position:
               
chr3:46350675-46350391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
120-399
               

               
Cow position:
               
chr3:61144098-61143813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
121-304
               

               
Cow position:
               
chr3:53318401-53318218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr3:29813244-29813005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr3:70899893-70899662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr3:71231396-71231168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr3:75727584-75727827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 137
               

               
Conread position:
               
121-357
               

               
Cow position:
               
chr3:78894325-78894552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
121-376
               

               
Cow position:
               
chr3:23169064-23169327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr3:18067141-18066873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 143
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr3:20802620-20802890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr3:65413278-65413536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 136
               

               
Conread position:
               
121-384
               

               
Cow position:
               
chr3:364212-364485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
122-304
               

               
Cow position:
               
chr3:75687438-75687624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
122-333
               

               
Cow position:
               
chr3:76713321-76713536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
122-336
               

               
Cow position:
               
chr3:62790009-62790237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
122-357
               

               
Cow position:
               
chr3:48923522-48923751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
122-357
               

               
Cow position:
               
chr3:63332811-63332572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
122-358
               

               
Cow position:
               
chr3:58968904-58969135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
122-375
               

               
Cow position:
               
chr3:68627688-68627931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
122-376
               

               
Cow position:
               
chr3:62826621-62826880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
122-376
               

               
Cow position:
               
chr3:69961716-69961968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr3:53150324-53150067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
122-379
               

               
Cow position:
               
chr3:32585149-32584897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
122-379
               

               
Cow position:
               
chr3:74533348-74533087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
123-265
               

               
Cow position:
               
chr3:15790553-15790409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
123-294
               

               
Cow position:
               
chr3:15232029-15231855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 136
               

               
Conread position:
               
123-357
               

               
Cow position:
               
chr3:75080761-75080528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
123-379
               

               
Cow position:
               
chr3:7331125-7331377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
123-379
               

               
Cow position:
               
chr3:28692431-28692690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 146
               

               
Conread position:
               
123-379
               

               
Cow position:
               
chr3:45534295-45534560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 110
               

               
Conread position:
               
124-273
               

               
Cow position:
               
chr3:11198786-11198934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
124-356
               

               
Cow position:
               
chr3:11020115-11019881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
124-357
               

               
Cow position:
               
chr3:3032406-3032157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
124-376
               

               
Cow position:
               
chr3:1133080-1133352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 161
               

               
Conread position:
               
124-376
               

               
Cow position:
               
chr3:17222145-17222401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
124-377
               

               
Cow position:
               
chr3:13507465-13507206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 142
               

               
Conread position:
               
124-379
               

               
Cow position:
               
chr3:45647677-45647414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
125-354
               

               
Cow position:
               
chr3:31046955-31047184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
125-357
               

               
Cow position:
               
chr3:13899451-13899691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
125-357
               

               
Cow position:
               
chr3:53222008-53221776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
125-361
               

               
Cow position:
               
chr3:17447616-17447849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 137
               

               
Conread position:
               
125-374
               

               
Cow position:
               
chr3:75479999-75479753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 140
               

               
Conread position:
               
125-376
               

               
Cow position:
               
chr3:42483904-42483643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
30, 137
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr3:44622890-44623157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr3:3738478-3738248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
126-376
               

               
Cow position:
               
chr3:2392967-2393223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
29, 141
               

               
Conread position:
               
126-376
               

               
Cow position:
               
chr3:26065994-26065744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
126-376
               

               
Cow position:
               
chr3:59208799-59208557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
126-379
               

               
Cow position:
               
chr3:83934503-83934253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
127-375
               

               
Cow position:
               
chr3:14626159-14626408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 128
               

               
Conread position:
               
127-376
               

               
Cow position:
               
chr3:61678699-61678434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
128-334
               

               
Cow position:
               
chr3:25060073-25059858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
27, 132
               

               
Conread position:
               
128-357
               

               
Cow position:
               
chr3:50768672-50768440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
128-374
               

               
Cow position:
               
chr3:44534766-44535022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
128-379
               

               
Cow position:
               
chr3:12324063-12323804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
129-313
               

               
Cow position:
               
chr3:61024309-61024498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
26, 131
               

               
Conread position:
               
129-322
               

               
Cow position:
               
chr3:67520177-67520379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
129-344
               

               
Cow position:
               
chr3:21050845-21051063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
129-357
               

               
Cow position:
               
chr3:41366988-41367222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
28, 133
               

               
Conread position:
               
129-357
               

               
Cow position:
               
chr3:59271535-59271313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
129-357
               

               
Cow position:
               
chr3:80922563-80922330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
129-357
               

               
Cow position:
               
chr3:81401320-81401544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
129-375
               

               
Cow position:
               
chr3:3164503-3164752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
129-376
               

               
Cow position:
               
chr3:24304923-24305162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 125
               

               
Conread position:
               
129-376
               

               
Cow position:
               
chr3:63860897-63861158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
129-376
               

               
Cow position:
               
chr3:82657095-82657342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
130-265
               

               
Cow position:
               
chr3:76169293-76169436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
130-357
               

               
Cow position:
               
chr3:4332356-4332125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 132
               

               
Conread position:
               
131-357
               

               
Cow position:
               
chr3:2036289-2036060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 134
               

               
Conread position:
               
131-371
               

               
Cow position:
               
chr3:49787404-49787154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
131-376
               

               
Cow position:
               
chr3:30358643-30358892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr3:74119445-74119702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
132-357
               

               
Cow position:
               
chr3:2396790-2397021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 132
               

               
Conread position:
               
132-357
               

               
Cow position:
               
chr3:19789125-19789357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
132-357
               

               
Cow position:
               
chr3:70333492-70333714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
132-357
               

               
Cow position:
               
chr3:77227314-77227080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 135
               

               
Conread position:
               
132-357
               

               
Cow position:
               
chr3:81940247-81940013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
132-376
               

               
Cow position:
               
chr3:28675976-28675732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
132-376
               

               
Cow position:
               
chr3:78201257-78201010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
132-405
               

               
Cow position:
               
chr3:73590005-73590288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 137
               

               
Conread position:
               
133-337
               

               
Cow position:
               
chr3:79339851-79340060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
133-357
               

               
Cow position:
               
chr3:29887433-29887662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
133-376
               

               
Cow position:
               
chr3:49731651-49731895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 127
               

               
Conread position:
               
134-323
               

               
Cow position:
               
chr3:59885380-59885180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
134-333
               

               
Cow position:
               
chr3:3062555-3062348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
134-357
               

               
Cow position:
               
chr3:45313037-45312815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
134-378
               

               
Cow position:
               
chr3:22900008-22900253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
136-344
               

               
Cow position:
               
chr3:56301365-56301573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
136-357
               

               
Cow position:
               
chr3:47284821-47284599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
136-376
               

               
Cow position:
               
chr3:2903308-2903547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
136-376
               

               
Cow position:
               
chr3:46160858-46161102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 108
               

               
Conread position:
               
136-376
               

               
Cow position:
               
chr3:77496814-77496560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
137-338
               

               
Cow position:
               
chr3:55062887-55063087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
138-379
               

               
Cow position:
               
chr3:67161927-67161671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
142-357
               

               
Cow position:
               
chr3:8604039-8604252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
142-376
               

               
Cow position:
               
chr3:45307915-45307677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
144-357
               

               
Cow position:
               
chr3:19006634-19006429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
145-333
               

               
Cow position:
               
chr3:49140063-49140250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 122
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr3:4087183-4087423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 117
               

               
Conread position:
               
146-356
               

               
Cow position:
               
chr3:49455213-49454998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 119
               

               
Conread position:
               
147-323
               

               
Cow position:
               
chr3:65381124-65380949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
147-374
               

               
Cow position:
               
chr3:2538231-2537996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
147-379
               

               
Cow position:
               
chr3:27286204-27285964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
147-379
               

               
Cow position:
               
chr3:54903547-54903308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
148-354
               

               
Cow position:
               
chr3:15661728-15661935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
148-374
               

               
Cow position:
               
chr3:13353329-13353101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
153-357
               

               
Cow position:
               
chr3:58158508-58158705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 32
               

               
Conread position:
               
153-376
               

               
Cow position:
               
chr3:25691718-25691492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
155-357
               

               
Cow position:
               
chr3:82360008-82359807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
161-357
               

               
Cow position:
               
chr3:77006450-77006267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
165-356
               

               
Cow position:
               
chr3:26894615-26894424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
165-377
               

               
Cow position:
               
chr3:13577236-13577444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
165-377
               

               
Cow position:
               
chr3:31903161-31903368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
165-379
               

               
Cow position:
               
chr3:7858321-7858091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
165-379
               

               
Cow position:
               
chr3:28938953-28939176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
165-388
               

               
Cow position:
               
chr3:54881713-54881487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
166-357
               

               
Cow position:
               
chr3:32399303-32399492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
166-376
               

               
Cow position:
               
chr3:56582787-56582586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
167-379
               

               
Cow position:
               
chr3:14465764-14465965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
168-379
               

               
Cow position:
               
chr3:4461542-4461750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
168-379
               

               
Cow position:
               
chr3:6853556-6853761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
169-355
               

               
Cow position:
               
chr3:54782069-54782247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
170-353
               

               
Cow position:
               
chr3:15192513-15192329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
170-358
               

               
Cow position:
               
chr3:31501297-31501108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
171-340
               

               
Cow position:
               
chr3:10173187-10173357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
172-357
               

               
Cow position:
               
chr3:525290-525116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
172-357
               

               
Cow position:
               
chr3:79148321-79148514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr3:17936896-17937096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr3:23945044-23944840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr3:42588302-42588092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
174-357
               

               
Cow position:
               
chr3:2483390-2483215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
174-357
               

               
Cow position:
               
chr3:4861627-4861451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
175-346
               

               
Cow position:
               
chr3:61361347-61361181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
177-333
               

               
Cow position:
               
chr3:75535049-75534898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
177-357
               

               
Cow position:
               
chr3:22872106-22872290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
177-376
               

               
Cow position:
               
chr3:23277602-23277801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
177-376
               

               
Cow position:
               
chr3:34316017-34316221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
177-377
               

               
Cow position:
               
chr3:49337664-49337470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr3:31419641-31419464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
179-379
               

               
Cow position:
               
chr3:48566729-48566928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
180-347
               

               
Cow position:
               
chr3:23215634-23215812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
185-356
               

               
Cow position:
               
chr3:55971159-55970988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
185-379
               

               
Cow position:
               
chr3:55117032-55117233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
187-357
               

               
Cow position:
               
chr3:19198601-19198443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
188-351
               

               
Cow position:
               
chr3:8717182-8717013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
188-357
               

               
Cow position:
               
chr3:58383896-58383730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
188-375
               

               
Cow position:
               
chr3:66885111-66885294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
190-359
               

               
Cow position:
               
chr3:29334583-29334754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
190-376
               

               
Cow position:
               
chr3:56704616-56704794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
190-379
               

               
Cow position:
               
chr3:18855023-18854832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
191-378
               

               
Cow position:
               
chr3:61467530-61467345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
191-379
               

               
Cow position:
               
chr3:59701936-59701752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
191-453
               

               
Cow position:
               
chr3:23270021-23269763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
178, 59
               

               
Conread position:
               
192-357
               

               
Cow position:
               
chr3:65020258-65020096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
194-376
               

               
Cow position:
               
chr3:83988407-83988224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 121
               

               
Conread position:
               
195-379
               

               
Cow position:
               
chr3:34392179-34392357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
201-356
               

               
Cow position:
               
chr3:35283181-35283335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
201-378
               

               
Cow position:
               
chr3:51012619-51012793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 57
               

               
Conread position:
               
201-378
               

               
Cow position:
               
chr3:53222726-53222901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
206-357
               

               
Cow position:
               
chr3:21341054-21341202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
206-374
               

               
Cow position:
               
chr3:51609729-51609561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
206-376
               

               
Cow position:
               
chr3:16809877-16810048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
207-379
               

               
Cow position:
               
chr3:18607279-18607107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
208-376
               

               
Cow position:
               
chr3:36656863-36657027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
219-357
               

               
Cow position:
               
chr3:24639488-24639349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:61262698-61262542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
223-357
               

               
Cow position:
               
chr3:22907940-22908072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
223-379
               

               
Cow position:
               
chr3:84368481-84368630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
233-376
               

               
Cow position:
               
chr3:13118233-13118088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
250-377
               

               
Cow position:
               
chr3:53904055-53903926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
252-356
               

               
Cow position:
               
chr3:60389502-60389399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
256-357
               

               
Cow position:
               
chr3:48900639-48900740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 90
               

               
Conread position:
               
261-376
               

               
Cow position:
               
chr3:9638736-9638850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
470-790
               

               
Cow position:
               
chr3:16101034-16100709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 222
               

               
Conread position:
               
492-738
               

               
Cow position:
               
chr3:53279997-53280257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 92
               
Show alignments to all cow chromosomes.