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Cow genome map

           
Conread name:
           
Spl1-SPL01A070046
        

               
Conread position:
               
359-635
               

               
Cow position:
               
chr11:53510273-53510561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
361-621
               

               
Cow position:
               
chr11:2925085-2925342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
363-654
               

               
Cow position:
               
chr11:42067083-42066778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
369-651
               

               
Cow position:
               
chr11:55053077-55052803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
139, 41
               

               
Conread position:
               
369-659
               

               
Cow position:
               
chr11:19246992-19247284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
374-651
               

               
Cow position:
               
chr11:19500595-19500863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
376-634
               

               
Cow position:
               
chr11:81134957-81135226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
377-621
               

               
Cow position:
               
chr11:62663036-62663278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
377-624
               

               
Cow position:
               
chr11:11533734-11533976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
379-629
               

               
Cow position:
               
chr11:5201443-5201706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
380-583
               

               
Cow position:
               
chr11:30986839-30986633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
380-636
               

               
Cow position:
               
chr11:42183243-42182983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
381-581
               

               
Cow position:
               
chr11:42084471-42084682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
382-576
               

               
Cow position:
               
chr11:76248246-76248048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
383-560
               

               
Cow position:
               
chr11:5218964-5219142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
383-560
               

               
Cow position:
               
chr11:69676155-69676334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
383-590
               

               
Cow position:
               
chr11:29782356-29782155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
383-591
               

               
Cow position:
               
chr11:63478560-63478361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
383-633
               

               
Cow position:
               
chr11:29659762-29659503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 251
               

               
Conread position:
               
383-637
               

               
Cow position:
               
chr11:39060405-39060662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
383-650
               

               
Cow position:
               
chr11:2917390-2917662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
383-661
               

               
Cow position:
               
chr11:48086117-48085827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
384-550
               

               
Cow position:
               
chr11:81340342-81340512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
384-560
               

               
Cow position:
               
chr11:42206617-42206440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
384-560
               

               
Cow position:
               
chr11:53651838-53651659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
384-618
               

               
Cow position:
               
chr11:80819825-80820046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
384-633
               

               
Cow position:
               
chr11:8670217-8669953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 243
               

               
Conread position:
               
384-639
               

               
Cow position:
               
chr11:30355240-30354993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
384-651
               

               
Cow position:
               
chr11:44032206-44031924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
384-657
               

               
Cow position:
               
chr11:39115672-39115409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
384-657
               

               
Cow position:
               
chr11:71390376-71390648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
385-555
               

               
Cow position:
               
chr11:81928310-81928484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
385-584
               

               
Cow position:
               
chr11:1980068-1980277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
385-625
               

               
Cow position:
               
chr11:68913342-68913090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
386-549
               

               
Cow position:
               
chr11:15881224-15881391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
386-558
               

               
Cow position:
               
chr11:30857231-30857058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
386-559
               

               
Cow position:
               
chr11:17552883-17553061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
386-560
               

               
Cow position:
               
chr11:8421929-8422099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
386-579
               

               
Cow position:
               
chr11:17309598-17309405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
386-605
               

               
Cow position:
               
chr11:65826555-65826781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
386-620
               

               
Cow position:
               
chr11:4225283-4225052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
386-633
               

               
Cow position:
               
chr11:29960488-29960240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
386-633
               

               
Cow position:
               
chr11:62490616-62490379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
175, 13
               

               
Conread position:
               
386-635
               

               
Cow position:
               
chr11:84385441-84385695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
386-638
               

               
Cow position:
               
chr11:27248684-27248429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
386-643
               

               
Cow position:
               
chr11:65762387-65762668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
386-657
               

               
Cow position:
               
chr11:67615056-67615331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
386-659
               

               
Cow position:
               
chr11:36194490-36194208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
387-547
               

               
Cow position:
               
chr11:68313120-68312963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
387-560
               

               
Cow position:
               
chr11:26535979-26535805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
387-627
               

               
Cow position:
               
chr11:20205662-20205904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
387-633
               

               
Cow position:
               
chr11:22676307-22676058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
387-637
               

               
Cow position:
               
chr11:45646403-45646657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
387-639
               

               
Cow position:
               
chr11:17721604-17721869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
387-644
               

               
Cow position:
               
chr11:3715434-3715166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
387-654
               

               
Cow position:
               
chr11:82940434-82940702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
387-660
               

               
Cow position:
               
chr11:78380873-78381143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
387-665
               

               
Cow position:
               
chr11:53778818-53778526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
388-506
               

               
Cow position:
               
chr11:53314199-53314318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
388-552
               

               
Cow position:
               
chr11:36847364-36847194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
388-553
               

               
Cow position:
               
chr11:64096469-64096640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
388-558
               

               
Cow position:
               
chr11:4621241-4621410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
388-560
               

               
Cow position:
               
chr11:71814897-71814725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
388-560
               

               
Cow position:
               
chr11:80007868-80008049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
388-561
               

               
Cow position:
               
chr11:79666068-79666244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
388-567
               

               
Cow position:
               
chr11:37042168-37041983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
388-578
               

               
Cow position:
               
chr11:23278768-23278965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
388-578
               

               
Cow position:
               
chr11:81065856-81066053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
388-584
               

               
Cow position:
               
chr11:37099977-37100178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
388-595
               

               
Cow position:
               
chr11:56115132-56114918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
388-603
               

               
Cow position:
               
chr11:30842831-30843047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
388-607
               

               
Cow position:
               
chr11:30894809-30895036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
388-616
               

               
Cow position:
               
chr11:46329693-46329453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
388-619
               

               
Cow position:
               
chr11:63866466-63866703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
388-621
               

               
Cow position:
               
chr11:47899446-47899222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
388-622
               

               
Cow position:
               
chr11:69978161-69977923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
124, 104
               

               
Conread position:
               
388-629
               

               
Cow position:
               
chr11:62742454-62742695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
388-631
               

               
Cow position:
               
chr11:30964537-30964290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
388-632
               

               
Cow position:
               
chr11:72884418-72884650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
388-635
               

               
Cow position:
               
chr11:15467641-15467401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
388-635
               

               
Cow position:
               
chr11:18699065-18698818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
388-635
               

               
Cow position:
               
chr11:63435713-63435458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
388-637
               

               
Cow position:
               
chr11:35347556-35347815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
388-638
               

               
Cow position:
               
chr11:25119737-25119997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
388-639
               

               
Cow position:
               
chr11:23407654-23407397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
388-639
               

               
Cow position:
               
chr11:62789321-62789064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
388-639
               

               
Cow position:
               
chr11:83032871-83032617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
388-644
               

               
Cow position:
               
chr11:31413651-31413384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
388-644
               

               
Cow position:
               
chr11:32254022-32254287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
388-644
               

               
Cow position:
               
chr11:53773878-53773608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
388-651
               

               
Cow position:
               
chr11:34646789-34646510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
388-651
               

               
Cow position:
               
chr11:48296219-48295955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
388-654
               

               
Cow position:
               
chr11:19591802-19592071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
388-655
               

               
Cow position:
               
chr11:63998895-63999171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
388-657
               

               
Cow position:
               
chr11:45435273-45434996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
388-657
               

               
Cow position:
               
chr11:52297029-52297305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
388-657
               

               
Cow position:
               
chr11:74316901-74316628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
388-657
               

               
Cow position:
               
chr11:75285562-75285852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
388-660
               

               
Cow position:
               
chr11:46747666-46747947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
388-677
               

               
Cow position:
               
chr11:8437493-8437794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
389-536
               

               
Cow position:
               
chr11:6784398-6784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
389-560
               

               
Cow position:
               
chr11:63484136-63483961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
389-562
               

               
Cow position:
               
chr11:36104500-36104329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
389-592
               

               
Cow position:
               
chr11:48315205-48315414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
389-594
               

               
Cow position:
               
chr11:63165456-63165666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
389-627
               

               
Cow position:
               
chr11:80639359-80639602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
389-651
               

               
Cow position:
               
chr11:30830430-30830693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
389-651
               

               
Cow position:
               
chr11:48544629-48544354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
389-654
               

               
Cow position:
               
chr11:47725082-47724822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
389-654
               

               
Cow position:
               
chr11:50472511-50472237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
389-661
               

               
Cow position:
               
chr11:33409073-33409349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
390-560
               

               
Cow position:
               
chr11:53486969-53487135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
390-579
               

               
Cow position:
               
chr11:27502509-27502706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
390-583
               

               
Cow position:
               
chr11:54872567-54872763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
390-627
               

               
Cow position:
               
chr11:81167839-81168079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
390-631
               

               
Cow position:
               
chr11:18447307-18447548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
390-635
               

               
Cow position:
               
chr11:31875286-31875031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
390-641
               

               
Cow position:
               
chr11:13592931-13592669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
390-651
               

               
Cow position:
               
chr11:50152620-50152893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
390-657
               

               
Cow position:
               
chr11:47310791-47311069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
391-579
               

               
Cow position:
               
chr11:63498939-63499131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
392-639
               

               
Cow position:
               
chr11:15285433-15285681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
392-639
               

               
Cow position:
               
chr11:82740682-82740443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
163, 20
               

               
Conread position:
               
392-659
               

               
Cow position:
               
chr11:62812762-62813038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
394-621
               

               
Cow position:
               
chr11:6245509-6245272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
394-622
               

               
Cow position:
               
chr11:34644844-34644608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
395-563
               

               
Cow position:
               
chr11:43965703-43965862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
396-576
               

               
Cow position:
               
chr11:36361454-36361642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
396-607
               

               
Cow position:
               
chr11:10992444-10992233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
396-614
               

               
Cow position:
               
chr11:21886016-21885794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
396-621
               

               
Cow position:
               
chr11:30172486-30172263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
396-637
               

               
Cow position:
               
chr11:1932302-1932556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
396-639
               

               
Cow position:
               
chr11:62620562-62620310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
396-654
               

               
Cow position:
               
chr11:55494850-55494597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
396-659
               

               
Cow position:
               
chr11:38334707-38334438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
397-549
               

               
Cow position:
               
chr11:17369711-17369560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
397-560
               

               
Cow position:
               
chr11:25721820-25721976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
397-560
               

               
Cow position:
               
chr11:74839788-74839629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
397-561
               

               
Cow position:
               
chr11:68570196-68570363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
397-619
               

               
Cow position:
               
chr11:7874327-7874095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 230
               

               
Conread position:
               
397-621
               

               
Cow position:
               
chr11:15382310-15382549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
397-635
               

               
Cow position:
               
chr11:15772528-15772773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
398-545
               

               
Cow position:
               
chr11:12768580-12768432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
398-547
               

               
Cow position:
               
chr11:4653076-4653223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
398-549
               

               
Cow position:
               
chr11:9691193-9691034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
398-580
               

               
Cow position:
               
chr11:66685726-66685911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
398-584
               

               
Cow position:
               
chr11:19549662-19549475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 139
               

               
Conread position:
               
398-621
               

               
Cow position:
               
chr11:35669782-35669998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
398-633
               

               
Cow position:
               
chr11:16315060-16314813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 241
               

               
Conread position:
               
398-639
               

               
Cow position:
               
chr11:52380688-52380938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
398-639
               

               
Cow position:
               
chr11:70251098-70250854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
399-535
               

               
Cow position:
               
chr11:63977238-63977101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
399-537
               

               
Cow position:
               
chr11:62655874-62655735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
399-548
               

               
Cow position:
               
chr11:65431700-65431549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-560
               

               
Cow position:
               
chr11:81175781-81175615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-561
               

               
Cow position:
               
chr11:47784963-47784792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-561
               

               
Cow position:
               
chr11:82732967-82733132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
399-564
               

               
Cow position:
               
chr11:7617030-7617193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
399-568
               

               
Cow position:
               
chr11:15591297-15591465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-568
               

               
Cow position:
               
chr11:64335013-64334845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
399-576
               

               
Cow position:
               
chr11:77241885-77241704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
399-578
               

               
Cow position:
               
chr11:58186055-58185879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-579
               

               
Cow position:
               
chr11:6006492-6006308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
399-582
               

               
Cow position:
               
chr11:36300401-36300585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
399-594
               

               
Cow position:
               
chr11:71022183-71021981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
399-595
               

               
Cow position:
               
chr11:17517582-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
399-605
               

               
Cow position:
               
chr11:46427224-46427438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
399-619
               

               
Cow position:
               
chr11:897847-897629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
399-619
               

               
Cow position:
               
chr11:3175851-3175627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
399-621
               

               
Cow position:
               
chr11:49153123-49152904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
399-623
               

               
Cow position:
               
chr11:18924930-18924696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
399-623
               

               
Cow position:
               
chr11:28078672-28078455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
399-625
               

               
Cow position:
               
chr11:46922704-46922936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-627
               

               
Cow position:
               
chr11:15017241-15017006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
399-634
               

               
Cow position:
               
chr11:49057566-49057346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
399-634
               

               
Cow position:
               
chr11:67614742-67614983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-635
               

               
Cow position:
               
chr11:31228136-31227904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 17
               

               
Conread position:
               
399-635
               

               
Cow position:
               
chr11:52690342-52690581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-635
               

               
Cow position:
               
chr11:66188138-66188376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-635
               

               
Cow position:
               
chr11:83043184-83043423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
399-636
               

               
Cow position:
               
chr11:80556401-80556162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
399-637
               

               
Cow position:
               
chr11:64105176-64104935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:1625039-1625290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:20238859-20238607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:36182874-36182625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:44223064-44222821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:55911464-55911699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:65157222-65157475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:80923143-80923388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
399-644
               

               
Cow position:
               
chr11:39462804-39462552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
399-644
               

               
Cow position:
               
chr11:51195914-51196148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-648
               

               
Cow position:
               
chr11:20762035-20761772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
399-651
               

               
Cow position:
               
chr11:27747101-27746848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
399-651
               

               
Cow position:
               
chr11:30494171-30493921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
157, 16
               

               
Conread position:
               
399-654
               

               
Cow position:
               
chr11:35536758-35536507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
399-654
               

               
Cow position:
               
chr11:67600961-67600702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-655
               

               
Cow position:
               
chr11:49872704-49872967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-656
               

               
Cow position:
               
chr11:9270555-9270808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
161, 16
               

               
Conread position:
               
399-657
               

               
Cow position:
               
chr11:35153637-35153909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
399-657
               

               
Cow position:
               
chr11:35580444-35580173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
399-659
               

               
Cow position:
               
chr11:17676192-17676457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
399-659
               

               
Cow position:
               
chr11:27404888-27405156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
399-659
               

               
Cow position:
               
chr11:35212988-35213255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
399-665
               

               
Cow position:
               
chr11:19946604-19946342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
400-559
               

               
Cow position:
               
chr11:44614984-44615148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
400-582
               

               
Cow position:
               
chr11:49210635-49210829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
400-620
               

               
Cow position:
               
chr11:40395619-40395393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
400-629
               

               
Cow position:
               
chr11:22977698-22977930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
160, 33
               

               
Conread position:
               
400-634
               

               
Cow position:
               
chr11:45742552-45742320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
400-635
               

               
Cow position:
               
chr11:4207493-4207252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
400-637
               

               
Cow position:
               
chr11:24602141-24601901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
400-639
               

               
Cow position:
               
chr11:258991-259237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
400-639
               

               
Cow position:
               
chr11:30192360-30192110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
401-583
               

               
Cow position:
               
chr11:22884589-22884405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
401-620
               

               
Cow position:
               
chr11:38211822-38211600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
401-620
               

               
Cow position:
               
chr11:77013953-77013739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
401-628
               

               
Cow position:
               
chr11:11558349-11558116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
401-631
               

               
Cow position:
               
chr11:29786312-29786556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
401-639
               

               
Cow position:
               
chr11:15339236-15338999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
401-654
               

               
Cow position:
               
chr11:40608412-40608677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
401-677
               

               
Cow position:
               
chr11:34113436-34113163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
402-560
               

               
Cow position:
               
chr11:78672853-78672689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
402-584
               

               
Cow position:
               
chr11:9699075-9699254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
402-635
               

               
Cow position:
               
chr11:47837499-47837258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
402-653
               

               
Cow position:
               
chr11:30867357-30867101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
403-560
               

               
Cow position:
               
chr11:63485111-63484956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
403-579
               

               
Cow position:
               
chr11:70821223-70821050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
403-605
               

               
Cow position:
               
chr11:17278504-17278702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
403-622
               

               
Cow position:
               
chr11:39619871-39620086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
403-635
               

               
Cow position:
               
chr11:21843960-21844194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
403-635
               

               
Cow position:
               
chr11:30638773-30639007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
403-635
               

               
Cow position:
               
chr11:67312964-67312717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
403-651
               

               
Cow position:
               
chr11:21728110-21728352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
403-654
               

               
Cow position:
               
chr11:11125844-11125582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
403-657
               

               
Cow position:
               
chr11:40818454-40818722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
404-639
               

               
Cow position:
               
chr11:80564475-80564228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
405-639
               

               
Cow position:
               
chr11:18910706-18910943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
407-654
               

               
Cow position:
               
chr11:48474886-48474623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
409-639
               

               
Cow position:
               
chr11:8524943-8525175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
411-527
               

               
Cow position:
               
chr11:6154741-6154622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
411-560
               

               
Cow position:
               
chr11:80296686-80296834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
90, 54
               

               
Conread position:
               
411-566
               

               
Cow position:
               
chr11:15278845-15279000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
96, 79
               

               
Conread position:
               
411-584
               

               
Cow position:
               
chr11:2484623-2484801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
411-635
               

               
Cow position:
               
chr11:13500183-13499956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
411-639
               

               
Cow position:
               
chr11:17036359-17036594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
411-645
               

               
Cow position:
               
chr11:51729447-51729217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
411-647
               

               
Cow position:
               
chr11:43360614-43360846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
412-634
               

               
Cow position:
               
chr11:42159890-42160116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
412-635
               

               
Cow position:
               
chr11:13042976-13043205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
412-651
               

               
Cow position:
               
chr11:2907362-2907596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
412-656
               

               
Cow position:
               
chr11:36920406-36920662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
416-624
               

               
Cow position:
               
chr11:11469488-11469697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
92, 68
               

               
Conread position:
               
416-634
               

               
Cow position:
               
chr11:68206681-68206903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 55
               

               
Conread position:
               
416-639
               

               
Cow position:
               
chr11:34121363-34121130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
417-597
               

               
Cow position:
               
chr11:28993581-28993760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
417-605
               

               
Cow position:
               
chr11:35109373-35109568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 103
               

               
Conread position:
               
417-605
               

               
Cow position:
               
chr11:64409133-64408946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
417-621
               

               
Cow position:
               
chr11:33289302-33289506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
417-634
               

               
Cow position:
               
chr11:34144752-34144972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 141
               

               
Conread position:
               
417-639
               

               
Cow position:
               
chr11:42296460-42296682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
417-647
               

               
Cow position:
               
chr11:17227484-17227715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
417-654
               

               
Cow position:
               
chr11:70756641-70756401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
418-651
               

               
Cow position:
               
chr11:24599232-24599467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
140, 43
               

               
Conread position:
               
421-635
               

               
Cow position:
               
chr11:35926746-35926966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
421-644
               

               
Cow position:
               
chr11:3393053-3393281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
421-657
               

               
Cow position:
               
chr11:56187765-56187533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
421-657
               

               
Cow position:
               
chr11:59903052-59902807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
423-589
               

               
Cow position:
               
chr11:73977140-73977318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
423-595
               

               
Cow position:
               
chr11:9699048-9698882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
424-618
               

               
Cow position:
               
chr11:58927730-58927540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
424-639
               

               
Cow position:
               
chr11:47772225-47772457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
425-622
               

               
Cow position:
               
chr11:27913442-27913237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
426-600
               

               
Cow position:
               
chr11:84764177-84764011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
426-619
               

               
Cow position:
               
chr11:37425000-37425186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
428-560
               

               
Cow position:
               
chr11:62081819-62081949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 51
               

               
Conread position:
               
428-604
               

               
Cow position:
               
chr11:34467715-34467541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
428-639
               

               
Cow position:
               
chr11:4637022-4637238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
428-639
               

               
Cow position:
               
chr11:77319565-77319348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
428-639
               

               
Cow position:
               
chr11:81162294-81162499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 62
               

               
Conread position:
               
428-644
               

               
Cow position:
               
chr11:30370255-30370038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
428-651
               

               
Cow position:
               
chr11:39499508-39499276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
428-655
               

               
Cow position:
               
chr11:85723847-85723623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
429-559
               

               
Cow position:
               
chr11:4411721-4411849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
429-651
               

               
Cow position:
               
chr11:31410728-31410961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
433-664
               

               
Cow position:
               
chr11:71868455-71868693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
436-677
               

               
Cow position:
               
chr11:36112563-36112322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 176
               

               
Conread position:
               
437-657
               

               
Cow position:
               
chr11:17083171-17083395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
448-635
               

               
Cow position:
               
chr11:59873056-59872872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
457-657
               

               
Cow position:
               
chr11:33341020-33341231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
460-607
               

               
Cow position:
               
chr11:65803749-65803903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
460-622
               

               
Cow position:
               
chr11:63919935-63920101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
463-634
               

               
Cow position:
               
chr11:36328922-36329092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
464-560
               

               
Cow position:
               
chr11:62226104-62226005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
464-629
               

               
Cow position:
               
chr11:16906936-16907102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
464-635
               

               
Cow position:
               
chr11:7590303-7590134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
464-635
               

               
Cow position:
               
chr11:41293703-41293877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
464-637
               

               
Cow position:
               
chr11:48248099-48248279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
464-639
               

               
Cow position:
               
chr11:1070976-1071157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
464-639
               

               
Cow position:
               
chr11:30955115-30954935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
464-639
               

               
Cow position:
               
chr11:48272315-48272133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
464-639
               

               
Cow position:
               
chr11:59702606-59702420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
464-652
               

               
Cow position:
               
chr11:25387184-25386986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
464-660
               

               
Cow position:
               
chr11:19606691-19606493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
465-642
               

               
Cow position:
               
chr11:28644201-28644017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
465-654
               

               
Cow position:
               
chr11:35803250-35803053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
465-681
               

               
Cow position:
               
chr11:63909553-63909768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
466-622
               

               
Cow position:
               
chr11:64089986-64090144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
466-627
               

               
Cow position:
               
chr11:83230288-83230452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
466-651
               

               
Cow position:
               
chr11:69119407-69119214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
466-659
               

               
Cow position:
               
chr11:40573223-40573419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
467-639
               

               
Cow position:
               
chr11:26845483-26845659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
467-654
               

               
Cow position:
               
chr11:23586750-23586555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
468-639
               

               
Cow position:
               
chr11:62150783-62150957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
468-654
               

               
Cow position:
               
chr11:44036832-44036643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
469-635
               

               
Cow position:
               
chr11:22747221-22747390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
469-635
               

               
Cow position:
               
chr11:79018949-79019120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
470-657
               

               
Cow position:
               
chr11:11232346-11232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
472-640
               

               
Cow position:
               
chr11:3790949-3790769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
472-654
               

               
Cow position:
               
chr11:44636648-44636838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
475-639
               

               
Cow position:
               
chr11:43898244-43898075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
476-650
               

               
Cow position:
               
chr11:16342124-16342307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
478-639
               

               
Cow position:
               
chr11:65767301-65767133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
481-635
               

               
Cow position:
               
chr11:22499267-22499425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 147
               

               
Conread position:
               
481-657
               

               
Cow position:
               
chr11:23128442-23128627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
483-659
               

               
Cow position:
               
chr11:17661180-17661006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
484-611
               

               
Cow position:
               
chr11:3248611-3248745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
484-649
               

               
Cow position:
               
chr11:32690875-32691045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 138
               

               
Conread position:
               
485-664
               

               
Cow position:
               
chr11:44234450-44234265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
489-624
               

               
Cow position:
               
chr11:53553306-53553170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
490-648
               

               
Cow position:
               
chr11:10363297-10363462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
490-661
               

               
Cow position:
               
chr11:28168333-28168512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
491-624
               

               
Cow position:
               
chr11:76822000-76822135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
494-657
               

               
Cow position:
               
chr11:8428597-8428426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
497-621
               

               
Cow position:
               
chr11:16842904-16843030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
497-626
               

               
Cow position:
               
chr11:84490416-84490546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
5, 72
               

               
Conread position:
               
497-627
               

               
Cow position:
               
chr11:47545214-47545082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
497-633
               

               
Cow position:
               
chr11:53279632-53279770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
498-634
               

               
Cow position:
               
chr11:69652700-69652841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
508-651
               

               
Cow position:
               
chr11:54218785-54218639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
509-633
               

               
Cow position:
               
chr11:69392632-69392504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
509-651
               

               
Cow position:
               
chr11:6194275-6194128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 142
               
Show alignments to all cow chromosomes.