Non-Coding RNA Search

Cow genome map


           Conread name:
           Spl1-SPL01A070046
        

               Conread position:
               337-607
               

               Cow position:
               chr5:34347441-34347717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               12, 7
               

               Conread position:
               365-659
               

               Cow position:
               chr5:72895945-72895642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               367-560
               

               Cow position:
               chr5:60207963-60207770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               66, 48
               

               Conread position:
               369-644
               

               Cow position:
               chr5:66582225-66581939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               64, 19
               

               Conread position:
               370-644
               

               Cow position:
               chr5:16893526-16893799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               63, 16
               

               Conread position:
               371-575
               

               Cow position:
               chr5:49920180-49919967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               33, 42
               

               Conread position:
               373-639
               

               Cow position:
               chr5:70951640-70951897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               375-622
               

               Cow position:
               chr5:61914820-61914561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               375-637
               

               Cow position:
               chr5:38833366-38833102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               12, 42
               

               Conread position:
               376-560
               

               Cow position:
               chr5:60100714-60100532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               35, 106
               

               Conread position:
               376-605
               

               Cow position:
               chr5:2240739-2240976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               23, 40
               

               Conread position:
               376-620
               

               Cow position:
               chr5:6520260-6520009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 109
               

               Conread position:
               379-576
               

               Cow position:
               chr5:54341012-54340811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               46, 36
               

               Conread position:
               380-558
               

               Cow position:
               chr5:22957648-22957474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               53, 35
               

               Conread position:
               380-592
               

               Cow position:
               chr5:34288005-34288224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 39
               

               Conread position:
               380-637
               

               Cow position:
               chr5:32338717-32338984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               53, 19
               

               Conread position:
               383-594
               

               Cow position:
               chr5:21721233-21721441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               125, 32
               

               Conread position:
               383-632
               

               Cow position:
               chr5:39815258-39815504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               85, 32
               

               Conread position:
               383-635
               

               Cow position:
               chr5:44796494-44796747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               50, 32
               

               Conread position:
               383-637
               

               Cow position:
               chr5:12760878-12761137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               50, 32
               

               Conread position:
               383-642
               

               Cow position:
               chr5:55783720-55783971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               384-559
               

               Cow position:
               chr5:7012608-7012787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               49, 31
               

               Conread position:
               384-560
               

               Cow position:
               chr5:55756173-55756356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               54, 19
               

               Conread position:
               384-562
               

               Cow position:
               chr5:57447423-57447606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               49, 31
               

               Conread position:
               384-583
               

               Cow position:
               chr5:3817444-3817652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               384-584
               

               Cow position:
               chr5:57399010-57399218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               49, 31
               

               Conread position:
               384-607
               

               Cow position:
               chr5:60514784-60515017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               45, 31
               

               Conread position:
               384-621
               

               Cow position:
               chr5:64026768-64027022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               384-632
               

               Cow position:
               chr5:36650796-36650538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               384-644
               

               Cow position:
               chr5:63647236-63647500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               384-651
               

               Cow position:
               chr5:69461582-69461296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               34, 155
               

               Conread position:
               385-605
               

               Cow position:
               chr5:3743564-3743335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               97, 39
               

               Conread position:
               385-627
               

               Cow position:
               chr5:12902160-12901914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               385-639
               

               Cow position:
               chr5:59626725-59626995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               385-642
               

               Cow position:
               chr5:28302516-28302767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               123, 30
               

               Conread position:
               385-651
               

               Cow position:
               chr5:24995978-24996257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               27, 72
               

               Conread position:
               386-544
               

               Cow position:
               chr5:3626941-3627100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               386-549
               

               Cow position:
               chr5:19626815-19626651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               47, 29
               

               Conread position:
               386-560
               

               Cow position:
               chr5:34918587-34918408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 96
               

               Conread position:
               386-563
               

               Cow position:
               chr5:41984580-41984414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               40, 29
               

               Conread position:
               386-589
               

               Cow position:
               chr5:30492552-30492762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 40
               

               Conread position:
               386-595
               

               Cow position:
               chr5:37842038-37842256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               386-622
               

               Cow position:
               chr5:73167775-73168016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               45, 29
               

               Conread position:
               386-628
               

               Cow position:
               chr5:30276926-30276680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               45, 29
               

               Conread position:
               386-632
               

               Cow position:
               chr5:20128299-20128038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               26, 252
               

               Conread position:
               386-635
               

               Cow position:
               chr5:68537426-68537684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               47, 17
               

               Conread position:
               386-639
               

               Cow position:
               chr5:30233147-30232884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               47, 13
               

               Conread position:
               386-651
               

               Cow position:
               chr5:45472513-45472246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               155, 26
               

               Conread position:
               386-654
               

               Cow position:
               chr5:36038765-36039043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               18, 30
               

               Conread position:
               386-657
               

               Cow position:
               chr5:14314755-14314484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               47, 29
               

               Conread position:
               387-547
               

               Cow position:
               chr5:56327487-56327644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               17, 29
               

               Conread position:
               387-620
               

               Cow position:
               chr5:45225580-45225815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               32, 25
               

               Conread position:
               387-621
               

               Cow position:
               chr5:47316736-47316977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               14, 29
               

               Conread position:
               387-621
               

               Cow position:
               chr5:56028307-56028542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               46, 28
               

               Conread position:
               387-639
               

               Cow position:
               chr5:40109720-40109470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               46, 15
               

               Conread position:
               387-657
               

               Cow position:
               chr5:11229432-11229710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               213
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               388-518
               

               Cow position:
               chr5:74690015-74690150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               388-536
               

               Cow position:
               chr5:74050061-74049910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               388-552
               

               Cow position:
               chr5:37941569-37941737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               10, 21
               

               Conread position:
               388-556
               

               Cow position:
               chr5:52849320-52849151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               11, 26
               

               Conread position:
               388-558
               

               Cow position:
               chr5:25598062-25597896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               114, 26
               

               Conread position:
               388-561
               

               Cow position:
               chr5:2355755-2355581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 27
               

               Conread position:
               388-562
               

               Cow position:
               chr5:61580517-61580341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               388-576
               

               Cow position:
               chr5:31648657-31648466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               18, 89
               

               Conread position:
               388-579
               

               Cow position:
               chr5:41736421-41736221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               388-585
               

               Cow position:
               chr5:15991407-15991606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               388-598
               

               Cow position:
               chr5:15471155-15470953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               120, 27
               

               Conread position:
               388-603
               

               Cow position:
               chr5:26147825-26147606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               41, 24
               

               Conread position:
               388-605
               

               Cow position:
               chr5:51246895-51247118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               11, 23
               

               Conread position:
               388-607
               

               Cow position:
               chr5:17828240-17828468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               388-609
               

               Cow position:
               chr5:44810000-44810230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               45, 28
               

               Conread position:
               388-620
               

               Cow position:
               chr5:31052625-31052376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               47, 27
               

               Conread position:
               388-620
               

               Cow position:
               chr5:54751048-54750813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               26, 109
               

               Conread position:
               388-626
               

               Cow position:
               chr5:73253641-73253404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               45, 15
               

               Conread position:
               388-635
               

               Cow position:
               chr5:20994852-20995111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               388-636
               

               Cow position:
               chr5:12434772-12434522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               388-639
               

               Cow position:
               chr5:57074099-57074355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               388-650
               

               Cow position:
               chr5:26548906-26549175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               388-651
               

               Cow position:
               chr5:44446637-44446902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               210
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               388-654
               

               Cow position:
               chr5:18289358-18289093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               16, 87
               

               Conread position:
               388-654
               

               Cow position:
               chr5:57767750-57768018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               388-655
               

               Cow position:
               chr5:33560499-33560771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               45, 86
               

               Conread position:
               388-655
               

               Cow position:
               chr5:49474317-49474586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               388-657
               

               Cow position:
               chr5:63192514-63192783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               209
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               11, 30
               

               Conread position:
               388-659
               

               Cow position:
               chr5:6438789-6439078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               388-660
               

               Cow position:
               chr5:45845450-45845734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 30
               

               Conread position:
               388-664
               

               Cow position:
               chr5:69338051-69337777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               45, 29
               

               Conread position:
               388-666
               

               Cow position:
               chr5:49341794-49342099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               22, 283
               

               Conread position:
               388-677
               

               Cow position:
               chr5:30247288-30247581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               389-551
               

               Cow position:
               chr5:63079825-63079658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               389-562
               

               Cow position:
               chr5:52192202-52192369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               119, 26
               

               Conread position:
               389-580
               

               Cow position:
               chr5:16668926-16668735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               119, 25
               

               Conread position:
               389-581
               

               Cow position:
               chr5:12562523-12562723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               15, 27
               

               Conread position:
               389-595
               

               Cow position:
               chr5:35190342-35190133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               43, 26
               

               Conread position:
               389-621
               

               Cow position:
               chr5:58519178-58519419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               389-624
               

               Cow position:
               chr5:60523962-60523727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               44, 14
               

               Conread position:
               389-654
               

               Cow position:
               chr5:7057158-7057437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               23, 164
               

               Conread position:
               390-574
               

               Cow position:
               chr5:5017605-5017420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               44, 14
               

               Conread position:
               390-632
               

               Cow position:
               chr5:17105080-17104839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 25
               

               Conread position:
               390-635
               

               Cow position:
               chr5:63627305-63627542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               390-649
               

               Cow position:
               chr5:70591777-70591537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               122, 25
               

               Conread position:
               390-651
               

               Cow position:
               chr5:44028073-44028339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 43
               

               Conread position:
               390-655
               

               Cow position:
               chr5:5856095-5855825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               43, 19
               

               Conread position:
               391-621
               

               Cow position:
               chr5:22608873-22608640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               391-632
               

               Cow position:
               chr5:56524397-56524160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               392-510
               

               Cow position:
               chr5:63940221-63940335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               392-624
               

               Cow position:
               chr5:74643451-74643681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               392-627
               

               Cow position:
               chr5:43403142-43402896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               392-631
               

               Cow position:
               chr5:64175897-64176140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 23
               

               Conread position:
               392-639
               

               Cow position:
               chr5:35763477-35763254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               392-644
               

               Cow position:
               chr5:30253973-30253715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               392-644
               

               Cow position:
               chr5:31475917-31475658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               393-560
               

               Cow position:
               chr5:74887667-74887838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               40, 16
               

               Conread position:
               394-576
               

               Cow position:
               chr5:35394207-35394391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               9, 22
               

               Conread position:
               395-603
               

               Cow position:
               chr5:65552487-65552696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 95
               

               Conread position:
               395-619
               

               Cow position:
               chr5:25495121-25495361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 20
               

               Conread position:
               395-624
               

               Cow position:
               chr5:56548796-56548566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               395-644
               

               Cow position:
               chr5:41935423-41935679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               38, 137
               

               Conread position:
               395-659
               

               Cow position:
               chr5:30845338-30845068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               34, 97
               

               Conread position:
               396-539
               

               Cow position:
               chr5:18579118-18578975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               396-565
               

               Cow position:
               chr5:4981677-4981507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 94
               

               Conread position:
               396-584
               

               Cow position:
               chr5:62996188-62995991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               396-629
               

               Cow position:
               chr5:50942936-50943164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               110, 24
               

               Conread position:
               396-639
               

               Cow position:
               chr5:45186886-45187141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               396-658
               

               Cow position:
               chr5:61726186-61725924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               396-677
               

               Cow position:
               chr5:33834269-33833987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               397-560
               

               Cow position:
               chr5:37253651-37253491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               397-573
               

               Cow position:
               chr5:29599322-29599497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               36, 84
               

               Conread position:
               397-605
               

               Cow position:
               chr5:52853195-52852984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               397-631
               

               Cow position:
               chr5:39937344-39937104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               18, 28
               

               Conread position:
               397-659
               

               Cow position:
               chr5:22667298-22667034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               398-560
               

               Cow position:
               chr5:46479020-46479180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               110, 17
               

               Conread position:
               398-560
               

               Cow position:
               chr5:49207102-49207265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               398-560
               

               Cow position:
               chr5:60153994-60153837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               35, 11
               

               Conread position:
               398-560
               

               Cow position:
               chr5:67340108-67339945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               398-582
               

               Cow position:
               chr5:1693865-1694052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               398-596
               

               Cow position:
               chr5:51289374-51289569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               398-621
               

               Cow position:
               chr5:40241961-40241744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               17, 28
               

               Conread position:
               398-633
               

               Cow position:
               chr5:52001395-52001635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               83, 227
               

               Conread position:
               398-635
               

               Cow position:
               chr5:12322584-12322823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               17, 73
               

               Conread position:
               398-639
               

               Cow position:
               chr5:7044479-7044728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               398-654
               

               Cow position:
               chr5:56014949-56014692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               398-654
               

               Cow position:
               chr5:57101570-57101819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               114, 17
               

               Conread position:
               398-662
               

               Cow position:
               chr5:35208492-35208220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               35, 98
               

               Conread position:
               399-539
               

               Cow position:
               chr5:48104486-48104344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               399-549
               

               Cow position:
               chr5:64061239-64061092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-552
               

               Cow position:
               chr5:58401791-58401639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-558
               

               Cow position:
               chr5:32975989-32975822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               69, 16
               

               Conread position:
               399-560
               

               Cow position:
               chr5:25462309-25462150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 10
               

               Conread position:
               399-560
               

               Cow position:
               chr5:52211465-52211625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               399-560
               

               Cow position:
               chr5:63300304-63300140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               399-566
               

               Cow position:
               chr5:34787798-34787630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               399-576
               

               Cow position:
               chr5:36143204-36143031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-582
               

               Cow position:
               chr5:57497200-57497388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-590
               

               Cow position:
               chr5:6086115-6086315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               399-594
               

               Cow position:
               chr5:26167645-26167445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               15, 26
               

               Conread position:
               399-599
               

               Cow position:
               chr5:54312825-54312620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               399-605
               

               Cow position:
               chr5:5016649-5016442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               399-607
               

               Cow position:
               chr5:60948358-60948144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               36, 15
               

               Conread position:
               399-619
               

               Cow position:
               chr5:25035028-25035255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-621
               

               Cow position:
               chr5:17086791-17087023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               399-621
               

               Cow position:
               chr5:46540834-46541058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-621
               

               Cow position:
               chr5:57062302-57062532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-621
               

               Cow position:
               chr5:64139789-64139557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               399-624
               

               Cow position:
               chr5:11427010-11427240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               76, 16
               

               Conread position:
               399-624
               

               Cow position:
               chr5:46512542-46512776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-627
               

               Cow position:
               chr5:34914827-34915062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               27, 12
               

               Conread position:
               399-629
               

               Cow position:
               chr5:42670647-42670880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-629
               

               Cow position:
               chr5:47602034-47601802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-630
               

               Cow position:
               chr5:3582781-3582548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               399-631
               

               Cow position:
               chr5:51298489-51298727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-633
               

               Cow position:
               chr5:34625174-34624944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-633
               

               Cow position:
               chr5:35685159-35684922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               399-635
               

               Cow position:
               chr5:12557061-12557308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               399-635
               

               Cow position:
               chr5:66972656-66972412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               67, 16
               

               Conread position:
               399-639
               

               Cow position:
               chr5:15364096-15363859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-639
               

               Cow position:
               chr5:17999270-17999513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               16, 27
               

               Conread position:
               399-639
               

               Cow position:
               chr5:30303107-30302872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-639
               

               Cow position:
               chr5:56071089-56070835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               399-644
               

               Cow position:
               chr5:35969766-35969509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               399-650
               

               Cow position:
               chr5:8736051-8736323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               36, 13
               

               Conread position:
               399-651
               

               Cow position:
               chr5:26467853-26467589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               399-651
               

               Cow position:
               chr5:65941024-65941286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               34, 10
               

               Conread position:
               399-654
               

               Cow position:
               chr5:21617681-21617420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-654
               

               Cow position:
               chr5:34562235-34561975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               36, 16
               

               Conread position:
               399-654
               

               Cow position:
               chr5:55068926-55068669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               86, 16
               

               Conread position:
               399-655
               

               Cow position:
               chr5:11667958-11668222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-657
               

               Cow position:
               chr5:30628927-30629199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               399-657
               

               Cow position:
               chr5:57934894-57935150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               399-659
               

               Cow position:
               chr5:64321988-64321713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               399-660
               

               Cow position:
               chr5:9893899-9894169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               399-660
               

               Cow position:
               chr5:42050770-42050507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               109, 16
               

               Conread position:
               400-576
               

               Cow position:
               chr5:6876740-6876926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               29, 15
               

               Conread position:
               400-596
               

               Cow position:
               chr5:69765809-69766005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               400-639
               

               Cow position:
               chr5:20288033-20288285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               400-639
               

               Cow position:
               chr5:69099944-69099697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               400-657
               

               Cow position:
               chr5:21829089-21828825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 15
               

               Conread position:
               401-557
               

               Cow position:
               chr5:6245441-6245598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               401-625
               

               Cow position:
               chr5:50824807-50824585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               401-643
               

               Cow position:
               chr5:14920702-14920957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               401-644
               

               Cow position:
               chr5:53835945-53835687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               32, 14
               

               Conread position:
               402-628
               

               Cow position:
               chr5:62172621-62172401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               110, 7
               

               Conread position:
               402-635
               

               Cow position:
               chr5:4280667-4280432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               402-671
               

               Cow position:
               chr5:50101155-50101431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 13
               

               Conread position:
               403-563
               

               Cow position:
               chr5:66287163-66287004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               30, 9
               

               Conread position:
               403-568
               

               Cow position:
               chr5:4824375-4824202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               25, 12
               

               Conread position:
               403-591
               

               Cow position:
               chr5:49821653-49821455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               403-611
               

               Cow position:
               chr5:15721864-15722067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               403-616
               

               Cow position:
               chr5:12654687-12654909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               403-620
               

               Cow position:
               chr5:39036004-39035778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               403-621
               

               Cow position:
               chr5:74039784-74040006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               403-630
               

               Cow position:
               chr5:69383473-69383243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               403-644
               

               Cow position:
               chr5:4267882-4267645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               403-654
               

               Cow position:
               chr5:35246885-35247149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               404-558
               

               Cow position:
               chr5:9559634-9559485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               29, 11
               

               Conread position:
               404-581
               

               Cow position:
               chr5:44734506-44734688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 13
               

               Conread position:
               404-624
               

               Cow position:
               chr5:33273918-33273690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               29, 11
               

               Conread position:
               404-625
               

               Cow position:
               chr5:56860664-56860438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 11
               

               Conread position:
               404-665
               

               Cow position:
               chr5:72045456-72045723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               22, 11
               

               Conread position:
               405-635
               

               Cow position:
               chr5:63234602-63234842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 8
               

               Conread position:
               405-643
               

               Cow position:
               chr5:65136477-65136248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               405-651
               

               Cow position:
               chr5:72006275-72006527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               406-629
               

               Cow position:
               chr5:50600265-50600036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               406-654
               

               Cow position:
               chr5:20779180-20779433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               27, 9
               

               Conread position:
               408-666
               

               Cow position:
               chr5:61007283-61007017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               61, 197
               

               Conread position:
               411-635
               

               Cow position:
               chr5:57101310-57101542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               22, 81
               

               Conread position:
               411-637
               

               Cow position:
               chr5:22795422-22795194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 48
               

               Conread position:
               411-644
               

               Cow position:
               chr5:41165298-41165060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               14, 70
               

               Conread position:
               411-653
               

               Cow position:
               chr5:29460417-29460176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               53, 135
               

               Conread position:
               412-584
               

               Cow position:
               chr5:36823084-36822921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               96, 42
               

               Conread position:
               412-635
               

               Cow position:
               chr5:55956125-55955891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               21, 75
               

               Conread position:
               412-645
               

               Cow position:
               chr5:55232608-55232832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               94, 17
               

               Conread position:
               412-657
               

               Cow position:
               chr5:17554820-17555073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               21, 75
               

               Conread position:
               413-605
               

               Cow position:
               chr5:42845383-42845580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               89, 23
               

               Conread position:
               414-605
               

               Cow position:
               chr5:12351603-12351794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               146, 67
               

               Conread position:
               414-651
               

               Cow position:
               chr5:60016377-60016133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               416-607
               

               Cow position:
               chr5:38169103-38168905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               12, 76
               

               Conread position:
               416-636
               

               Cow position:
               chr5:56334313-56334526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               143, 14
               

               Conread position:
               416-639
               

               Cow position:
               chr5:6286241-6286452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               144, 55
               

               Conread position:
               416-639
               

               Cow position:
               chr5:60184009-60183780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               11, 63
               

               Conread position:
               417-582
               

               Cow position:
               chr5:50087978-50087806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               417-621
               

               Cow position:
               chr5:29828258-29828043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               417-624
               

               Cow position:
               chr5:12673270-12673479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               16, 70
               

               Conread position:
               417-632
               

               Cow position:
               chr5:51065725-51065516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               16, 66
               

               Conread position:
               417-656
               

               Cow position:
               chr5:66257844-66257598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               21, 57
               

               Conread position:
               418-606
               

               Cow position:
               chr5:55942168-55942367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               419-638
               

               Cow position:
               chr5:65753068-65752837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               17, 94
               

               Conread position:
               419-642
               

               Cow position:
               chr5:45397773-45397548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               14, 72
               

               Conread position:
               421-651
               

               Cow position:
               chr5:71724492-71724266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               87, 50
               

               Conread position:
               424-606
               

               Cow position:
               chr5:46704100-46704287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               424-635
               

               Cow position:
               chr5:67932266-67932483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               57, 167
               

               Conread position:
               425-616
               

               Cow position:
               chr5:17604937-17605132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               83, 55
               

               Conread position:
               428-552
               

               Cow position:
               chr5:47960068-47960191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               83, 62
               

               Conread position:
               428-594
               

               Cow position:
               chr5:38040372-38040540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               73, 43
               

               Conread position:
               428-635
               

               Cow position:
               chr5:61456039-61455830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               68, 52
               

               Conread position:
               428-651
               

               Cow position:
               chr5:57686545-57686775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               84, 52
               

               Conread position:
               428-654
               

               Cow position:
               chr5:57419600-57419828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               80, 62
               

               Conread position:
               428-659
               

               Cow position:
               chr5:55795774-55796006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               80, 54
               

               Conread position:
               429-581
               

               Cow position:
               chr5:26097485-26097326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               57, 84
               

               Conread position:
               429-654
               

               Cow position:
               chr5:49501623-49501862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               430-621
               

               Cow position:
               chr5:65679777-65679973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               433-621
               

               Cow position:
               chr5:66366700-66366507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               434-642
               

               Cow position:
               chr5:66466504-66466294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               50, 101
               

               Conread position:
               434-654
               

               Cow position:
               chr5:35826787-35826566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               78, 49
               

               Conread position:
               434-657
               

               Cow position:
               chr5:17602015-17602242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               51, 139
               

               Conread position:
               436-597
               

               Cow position:
               chr5:695051-694885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               42, 7
               

               Conread position:
               436-635
               

               Cow position:
               chr5:11769460-11769253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               35, 182
               

               Conread position:
               437-654
               

               Cow position:
               chr5:30805345-30805131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               124, 34
               

               Conread position:
               438-659
               

               Cow position:
               chr5:7193599-7193375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               122, 43
               

               Conread position:
               447-639
               

               Cow position:
               chr5:68719045-68718848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               453-637
               

               Cow position:
               chr5:37646377-37646564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               57, 26
               

               Conread position:
               464-598
               

               Cow position:
               chr5:55850041-55849905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               9, 35
               

               Conread position:
               464-607
               

               Cow position:
               chr5:35647503-35647354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               464-607
               

               Cow position:
               chr5:44726175-44726323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               464-621
               

               Cow position:
               chr5:60599045-60599208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               19, 47
               

               Conread position:
               464-632
               

               Cow position:
               chr5:40242202-40242033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               44, 69
               

               Conread position:
               464-635
               

               Cow position:
               chr5:23678545-23678718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               464-635
               

               Cow position:
               chr5:61875695-61875526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               464-639
               

               Cow position:
               chr5:29912579-29912396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               464-641
               

               Cow position:
               chr5:46509706-46509891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               464-644
               

               Cow position:
               chr5:50821941-50821756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               47, 17
               

               Conread position:
               464-657
               

               Cow position:
               chr5:56212064-56211860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 17
               

               Conread position:
               464-657
               

               Cow position:
               chr5:56338863-56339061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               44, 25
               

               Conread position:
               464-663
               

               Cow position:
               chr5:43929578-43929783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               465-635
               

               Cow position:
               chr5:58555294-58555118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 25
               

               Conread position:
               466-677
               

               Cow position:
               chr5:58446964-58446746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               467-629
               

               Cow position:
               chr5:24069542-24069380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               469-637
               

               Cow position:
               chr5:41545740-41545914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               43, 20
               

               Conread position:
               472-621
               

               Cow position:
               chr5:57489799-57489948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 37
               

               Conread position:
               472-627
               

               Cow position:
               chr5:64591943-64592104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               472-639
               

               Cow position:
               chr5:54375352-54375528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               40, 17
               

               Conread position:
               472-651
               

               Cow position:
               chr5:45574772-45574581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               472-659
               

               Cow position:
               chr5:39258656-39258471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               36, 139
               

               Conread position:
               475-619
               

               Cow position:
               chr5:9233841-9233990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               32, 15
               

               Conread position:
               475-628
               

               Cow position:
               chr5:29903375-29903532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               37, 155
               

               Conread position:
               475-629
               

               Cow position:
               chr5:69731647-69731495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               481-639
               

               Cow position:
               chr5:20422053-20422209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               481-652
               

               Cow position:
               chr5:50533246-50533422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               481-654
               

               Cow position:
               chr5:35982594-35982778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               483-621
               

               Cow position:
               chr5:69636364-69636221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               484-590
               

               Cow position:
               chr5:29149027-29148919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               484-621
               

               Cow position:
               chr5:14629666-14629813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               484-639
               

               Cow position:
               chr5:56517243-56517081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               484-660
               

               Cow position:
               chr5:43992463-43992278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               485-639
               

               Cow position:
               chr5:6045434-6045270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               492-644
               

               Cow position:
               chr5:31640556-31640396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               497-657
               

               Cow position:
               chr5:26150295-26150462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               509-651
               

               Cow position:
               chr5:20407565-20407714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 0
               
Show alignments to all cow chromosomes.
Conread position:	337-607
Cow position:	chr5:34347441-34347717 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	198
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	12, 7
Conread position:	365-659
Cow position:	chr5:72895945-72895642 (view UCSC Genome Browser custom track)
Alignm length:	309
Alignm identity:	217
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	11, 28
Conread position:	367-560
Cow position:	chr5:60207963-60207770 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	150
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	66, 48
Conread position:	369-644
Cow position:	chr5:66582225-66581939 (view UCSC Genome Browser custom track)
Alignm length:	296
Alignm identity:	203
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	64, 19
Conread position:	370-644
Cow position:	chr5:16893526-16893799 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	208
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	63, 16
Conread position:	371-575
Cow position:	chr5:49920180-49919967 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	153
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	33, 42
Conread position:	373-639
Cow position:	chr5:70951640-70951897 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	207
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	60, 39
Conread position:	375-622
Cow position:	chr5:61914820-61914561 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	184
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	58, 24
Conread position:	375-637
Cow position:	chr5:38833366-38833102 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	204
Alignm E-value:	4.99983e-42
Alignm gaps (pig, cow):	12, 42
Conread position:	376-560
Cow position:	chr5:60100714-60100532 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	144
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	35, 106
Conread position:	376-605
Cow position:	chr5:2240739-2240976 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	172
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	23, 40
Conread position:	376-620
Cow position:	chr5:6520260-6520009 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	175
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	39, 109
Conread position:	379-576
Cow position:	chr5:54341012-54340811 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	148
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	46, 36
Conread position:	380-558
Cow position:	chr5:22957648-22957474 (view UCSC Genome Browser custom track)
Alignm length:	183
Alignm identity:	134
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	53, 35
Conread position:	380-592
Cow position:	chr5:34288005-34288224 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	184
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 39
Conread position:	380-637
Cow position:	chr5:32338717-32338984 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	198
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	53, 19
Conread position:	383-594
Cow position:	chr5:21721233-21721441 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	168
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	125, 32
Conread position:	383-632
Cow position:	chr5:39815258-39815504 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	189
Alignm E-value:	5e-30
Alignm gaps (pig, cow):	85, 32
Conread position:	383-635
Cow position:	chr5:44796494-44796747 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	183
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	50, 32
Conread position:	383-637
Cow position:	chr5:12760878-12761137 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	179
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	50, 32