Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 82-273 |
| Cow position: | chr12:33319766-33319575 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 82-303 |
| Cow position: | chr12:5631980-5631760 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 83-223 |
| Cow position: | chr12:18023532-18023382 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 83-243 |
| Cow position: | chr12:18577741-18577903 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 83-249 |
| Cow position: | chr12:30170571-30170737 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 155 |
| Conread position: | 83-265 |
| Cow position: | chr12:19691331-19691151 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 83-270 |
| Cow position: | chr12:24116460-24116274 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 83-273 |
| Cow position: | chr12:29770670-29770488 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 83-274 |
| Cow position: | chr12:45820465-45820276 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 83-280 |
| Cow position: | chr12:6485310-6485114 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 83-284 |
| Cow position: | chr12:37514380-37514180 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 83-307 |
| Cow position: | chr12:17269702-17269929 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 164 |
| Conread position: | 83-316 |
| Cow position: | chr12:15122225-15122464 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 165 |
| Conread position: | 83-333 |
| Cow position: | chr12:24032400-24032644 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 83-334 |
| Cow position: | chr12:9766977-9766724 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 172 |
| Conread position: | 83-334 |
| Cow position: | chr12:18583090-18582842 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 83-334 |
| Cow position: | chr12:32169442-32169703 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 83-342 |
| Cow position: | chr12:33851261-33851521 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 83-342 |
| Cow position: | chr12:42879596-42879864 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 63, 157 |
| Conread position: | 83-345 |
| Cow position: | chr12:18518569-18518840 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 168 |
| Conread position: | 83-357 |
| Cow position: | chr12:20777020-20776748 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 83-423 |
| Cow position: | chr12:11587676-11588011 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 86-252 |
| Cow position: | chr12:30819147-30819316 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 86-265 |
| Cow position: | chr12:6720229-6720410 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 164 |
| Conread position: | 86-334 |
| Cow position: | chr12:15089419-15089673 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 86-346 |
| Cow position: | chr12:15429691-15429429 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 224 |
| Conread position: | 86-350 |
| Cow position: | chr12:30745621-30745890 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 87-334 |
| Cow position: | chr12:17879397-17879148 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 87-336 |
| Cow position: | chr12:11056781-11057025 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 57, 159 |
| Conread position: | 87-349 |
| Cow position: | chr12:9143293-9143557 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 87-349 |
| Cow position: | chr12:16670172-16670437 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 13, 142 |
| Conread position: | 88-271 |
| Cow position: | chr12:18020764-18020948 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 88-273 |
| Cow position: | chr12:46120922-46120740 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 88-328 |
| Cow position: | chr12:3371636-3371397 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 89-349 |
| Cow position: | chr12:37170035-37169777 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 89-351 |
| Cow position: | chr12:19261102-19261373 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 157 |
| Conread position: | 90-265 |
| Cow position: | chr12:30605255-30605081 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 92-304 |
| Cow position: | chr12:37770786-37770991 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 92-334 |
| Cow position: | chr12:17881773-17882012 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 94-334 |
| Cow position: | chr12:33948816-33949057 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 29, 155 |
| Conread position: | 95-266 |
| Cow position: | chr12:25805216-25805049 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 95-324 |
| Cow position: | chr12:36261603-36261841 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 100-324 |
| Cow position: | chr12:5839738-5839514 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 147 |
| Conread position: | 100-335 |
| Cow position: | chr12:26575814-26576050 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 24, 147 |
| Conread position: | 101-351 |
| Cow position: | chr12:6241234-6241495 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 248 |
| Conread position: | 102-264 |
| Cow position: | chr12:23644885-23644721 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 5, 152 |
| Conread position: | 103-332 |
| Cow position: | chr12:45092368-45092595 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 142 |
| Conread position: | 106-334 |
| Cow position: | chr12:17252273-17252046 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 120-274 |
| Cow position: | chr12:15260702-15260855 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 120-334 |
| Cow position: | chr12:18123608-18123823 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 120-342 |
| Cow position: | chr12:40158083-40157863 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 120-349 |
| Cow position: | chr12:15703558-15703323 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 131-334 |
| Cow position: | chr12:2734958-2734754 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 145-324 |
| Cow position: | chr12:48578808-48578982 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 161, 100 |
| Conread position: | 145-333 |
| Cow position: | chr12:14986714-14986903 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 98 |
| Conread position: | 145-334 |
| Cow position: | chr12:29731279-29731468 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 161, 122 |
| Conread position: | 145-348 |
| Cow position: | chr12:6480605-6480815 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 146-334 |
| Cow position: | chr12:2964016-2964203 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 29 |
| Conread position: | 146-334 |
| Cow position: | chr12:29316496-29316305 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 132 |
| Conread position: | 164-328 |
| Cow position: | chr12:38679033-38679199 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 142, 0 |
Show alignments to all cow chromosomes.