Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 82-342 |
| Cow position: | chr15:40835263-40835001 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 83-234 |
| Cow position: | chr15:3726270-3726121 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 83-243 |
| Cow position: | chr15:4093785-4093945 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 83-243 |
| Cow position: | chr15:14870891-14870731 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 83-246 |
| Cow position: | chr15:26404430-26404268 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 83-248 |
| Cow position: | chr15:78721-78557 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 83-260 |
| Cow position: | chr15:20351978-20351803 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 83-262 |
| Cow position: | chr15:40415491-40415671 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 83-263 |
| Cow position: | chr15:44237566-44237386 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 83-272 |
| Cow position: | chr15:30470822-30471011 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 158 |
| Conread position: | 83-273 |
| Cow position: | chr15:10335904-10335714 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 83-273 |
| Cow position: | chr15:34751233-34751047 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 83-273 |
| Cow position: | chr15:42789000-42789188 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 83-274 |
| Cow position: | chr15:26718773-26718963 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 83-277 |
| Cow position: | chr15:49258011-49257820 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 83-288 |
| Cow position: | chr15:26911929-26912131 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 83-290 |
| Cow position: | chr15:6530700-6530905 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 83-304 |
| Cow position: | chr15:33643240-33643017 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 83-328 |
| Cow position: | chr15:36259455-36259697 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 83-334 |
| Cow position: | chr15:20391127-20391383 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 83-336 |
| Cow position: | chr15:25907065-25906810 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 18, 177 |
| Conread position: | 83-347 |
| Cow position: | chr15:25208615-25208877 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 83-349 |
| Cow position: | chr15:39598390-39598124 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 83-352 |
| Cow position: | chr15:24967937-24967674 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 83-355 |
| Cow position: | chr15:3695782-3695509 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 83-364 |
| Cow position: | chr15:1722701-1722977 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 162 |
| Conread position: | 84-316 |
| Cow position: | chr15:33306258-33306032 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 86-261 |
| Cow position: | chr15:30047398-30047573 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 24, 162 |
| Conread position: | 86-264 |
| Cow position: | chr15:29340210-29340029 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 177 |
| Conread position: | 86-303 |
| Cow position: | chr15:5420736-5420955 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 162 |
| Conread position: | 86-324 |
| Cow position: | chr15:41056060-41056305 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 86-344 |
| Cow position: | chr15:32234186-32234432 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 86-347 |
| Cow position: | chr15:14988136-14987875 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 86-349 |
| Cow position: | chr15:3700141-3700406 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 87-273 |
| Cow position: | chr15:47042484-47042673 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 166 |
| Conread position: | 87-342 |
| Cow position: | chr15:24994370-24994625 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 87-348 |
| Cow position: | chr15:51307536-51307793 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 131 |
| Conread position: | 88-259 |
| Cow position: | chr15:46868569-46868740 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 126 |
| Conread position: | 88-265 |
| Cow position: | chr15:10563357-10563537 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 88-342 |
| Cow position: | chr15:14888498-14888751 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 151 |
| Conread position: | 89-248 |
| Cow position: | chr15:37284598-37284436 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 89-290 |
| Cow position: | chr15:40594360-40594564 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 90-327 |
| Cow position: | chr15:34896902-34896662 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 90-352 |
| Cow position: | chr15:17763047-17762785 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 91-261 |
| Cow position: | chr15:16908573-16908405 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 91-348 |
| Cow position: | chr15:12304781-12304518 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 91-351 |
| Cow position: | chr15:22930206-22930471 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 145 |
| Conread position: | 93-351 |
| Cow position: | chr15:17870145-17870413 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 98-334 |
| Cow position: | chr15:21903280-21903513 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 98-334 |
| Cow position: | chr15:26851092-26851330 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 98-347 |
| Cow position: | chr15:30986161-30986405 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 185 |
| Conread position: | 102-304 |
| Cow position: | chr15:47843962-47844164 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 102-333 |
| Cow position: | chr15:53716563-53716329 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 105-243 |
| Cow position: | chr15:6905204-6905065 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 107-274 |
| Cow position: | chr15:11912434-11912600 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 109-273 |
| Cow position: | chr15:25650290-25650450 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 113-264 |
| Cow position: | chr15:16307541-16307390 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 32, 142 |
| Conread position: | 115-334 |
| Cow position: | chr15:9879260-9879486 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 203 |
| Conread position: | 120-328 |
| Cow position: | chr15:22532360-22532153 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 156, 25 |
| Conread position: | 120-334 |
| Cow position: | chr15:26442327-26442108 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 120-338 |
| Cow position: | chr15:244893-244673 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 120-342 |
| Cow position: | chr15:24982066-24982290 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 120-352 |
| Cow position: | chr15:49132170-49131935 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 121-347 |
| Cow position: | chr15:36887946-36887723 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 122-346 |
| Cow position: | chr15:50333090-50332857 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 123-274 |
| Cow position: | chr15:2389806-2389655 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 124-334 |
| Cow position: | chr15:19002168-19002389 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 126-349 |
| Cow position: | chr15:43715430-43715209 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 128-345 |
| Cow position: | chr15:14964065-14964277 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 181, 22 |
| Conread position: | 145-328 |
| Cow position: | chr15:34223952-34223767 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 161 |
| Conread position: | 150-288 |
| Cow position: | chr15:39384368-39384229 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 113, 47 |
| Conread position: | 151-347 |
| Cow position: | chr15:28099192-28098993 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 159-349 |
| Cow position: | chr15:46283845-46284036 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 117, 101 |
| Conread position: | 167-290 |
| Cow position: | chr15:28788280-28788157 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-334 |
| Cow position: | chr15:848707-848541 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 97, 85 |
| Conread position: | 175-349 |
| Cow position: | chr15:26849481-26849653 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 135, 85 |
Show alignments to all cow chromosomes.