Cow genome map

Conread name: Spl1-SPL01B040095

Conread position: 78-335
Cow position: chr17:9932325-9932074 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 34, 168

Conread position: 79-273
Cow position: chr17:24163015-24163206 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 92

Conread position: 82-261
Cow position: chr17:11478746-11478928 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 22, 167

Conread position: 82-327
Cow position: chr17:33288678-33288429 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 32, 172

Conread position: 82-334
Cow position: chr17:21039543-21039792 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 64, 34

Conread position: 83-241
Cow position: chr17:11368869-11368710 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 124

Conread position: 83-258
Cow position: chr17:21758156-21757984 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 22

Conread position: 83-261
Cow position: chr17:12591149-12591334 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 83-263
Cow position: chr17:40406426-40406606 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 53

Conread position: 83-264
Cow position: chr17:20990213-20990029 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 70

Conread position: 83-264
Cow position: chr17:39736156-39736337 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 80

Conread position: 83-265
Cow position: chr17:5423090-5422907 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 27, 164

Conread position: 83-273
Cow position: chr17:9911739-9911927 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 84

Conread position: 83-273
Cow position: chr17:32138441-32138255 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 62, 36

Conread position: 83-273
Cow position: chr17:32273704-32273515 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 61, 17

Conread position: 83-274
Cow position: chr17:18495538-18495349 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 101

Conread position: 83-284
Cow position: chr17:18592421-18592623 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 39

Conread position: 83-285
Cow position: chr17:35573739-35573934 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 63, 23

Conread position: 83-288
Cow position: chr17:18109103-18108898 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 62, 99

Conread position: 83-316
Cow position: chr17:25126334-25126562 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 63, 26

Conread position: 83-316
Cow position: chr17:26575249-26575004 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 26, 39

Conread position: 83-323
Cow position: chr17:45296397-45296631 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 34

Conread position: 83-324
Cow position: chr17:32471802-32471562 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 18, 168

Conread position: 83-334
Cow position: chr17:908725-908975 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 27

Conread position: 83-334
Cow position: chr17:6423743-6423990 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 167

Conread position: 83-334
Cow position: chr17:9824651-9824903 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 29, 47

Conread position: 83-334
Cow position: chr17:20072108-20071867 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 182, 23

Conread position: 83-334
Cow position: chr17:24587604-24587859 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 34, 163

Conread position: 83-334
Cow position: chr17:24824224-24824482 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 62, 27

Conread position: 83-334
Cow position: chr17:25612071-25612323 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 40, 9

Conread position: 83-334
Cow position: chr17:30728489-30728743 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 27

Conread position: 83-334
Cow position: chr17:32419132-32418881 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 34

Conread position: 83-335
Cow position: chr17:10458955-10458697 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 166

Conread position: 83-335
Cow position: chr17:20022534-20022277 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 83-341
Cow position: chr17:11912525-11912262 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 22, 171

Conread position: 83-341
Cow position: chr17:25901179-25901451 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 30, 0

Conread position: 83-342
Cow position: chr17:3577518-3577771 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 154

Conread position: 83-342
Cow position: chr17:25128366-25128110 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 63, 24

Conread position: 83-342
Cow position: chr17:31037398-31037133 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 29, 242

Conread position: 83-346
Cow position: chr17:6318885-6318621 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 63, 54

Conread position: 83-348
Cow position: chr17:9853969-9854232 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 188
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 26

Conread position: 83-349
Cow position: chr17:29995456-29995184 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 83-350
Cow position: chr17:24787041-24786773 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 37

Conread position: 83-353
Cow position: chr17:1634513-1634239 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 43

Conread position: 83-353
Cow position: chr17:22051610-22051339 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 158

Conread position: 83-360
Cow position: chr17:25473298-25473023 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 63, 36

Conread position: 84-334
Cow position: chr17:15102909-15102653 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 62, 23

Conread position: 86-273
Cow position: chr17:15340768-15340582 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 21

Conread position: 86-274
Cow position: chr17:3388809-3388998 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 28, 97

Conread position: 86-281
Cow position: chr17:30212870-30213065 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 69

Conread position: 86-328
Cow position: chr17:39606413-39606652 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 20, 186

Conread position: 86-342
Cow position: chr17:12959090-12959347 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 35

Conread position: 86-344
Cow position: chr17:8948981-8948721 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 71

Conread position: 86-348
Cow position: chr17:25800897-25800634 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 59, 24

Conread position: 86-348
Cow position: chr17:40412571-40412829 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 42

Conread position: 87-334
Cow position: chr17:32333106-32332856 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 23

Conread position: 87-334
Cow position: chr17:34791080-34790829 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 17, 24

Conread position: 87-348
Cow position: chr17:33155169-33154908 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 222, 177

Conread position: 87-349
Cow position: chr17:32989462-32989724 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 48

Conread position: 87-349
Cow position: chr17:32993638-32993376 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 50

Conread position: 88-315
Cow position: chr17:6329101-6329329 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 30

Conread position: 88-334
Cow position: chr17:33933761-33933512 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 158

Conread position: 89-273
Cow position: chr17:21325320-21325502 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 22

Conread position: 89-290
Cow position: chr17:29157403-29157603 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 74

Conread position: 89-332
Cow position: chr17:17044345-17044101 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 31

Conread position: 89-334
Cow position: chr17:21003840-21003595 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 20, 94

Conread position: 89-352
Cow position: chr17:3153584-3153314 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 23

Conread position: 90-269
Cow position: chr17:18848172-18847990 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 92-284
Cow position: chr17:40331758-40331944 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 41

Conread position: 92-349
Cow position: chr17:7959170-7959430 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 25

Conread position: 93-311
Cow position: chr17:40851967-40852178 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 14

Conread position: 93-347
Cow position: chr17:29715209-29714965 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 96

Conread position: 96-348
Cow position: chr17:43315294-43315042 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 65

Conread position: 99-328
Cow position: chr17:21472182-21471957 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 101

Conread position: 99-334
Cow position: chr17:21466265-21466022 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 48, 20

Conread position: 99-345
Cow position: chr17:36864627-36864871 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 146

Conread position: 99-347
Cow position: chr17:40276737-40276987 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 146

Conread position: 101-315
Cow position: chr17:18473163-18473380 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 28

Conread position: 102-350
Cow position: chr17:12510972-12510732 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 20

Conread position: 103-347
Cow position: chr17:11832111-11831869 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 7

Conread position: 110-290
Cow position: chr17:4225491-4225316 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 73

Conread position: 112-284
Cow position: chr17:24554006-24554179 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 165

Conread position: 117-324
Cow position: chr17:23101205-23100996 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 131

Conread position: 120-273
Cow position: chr17:29076065-29075913 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 117

Conread position: 120-341
Cow position: chr17:42150409-42150630 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 25, 149

Conread position: 120-347
Cow position: chr17:17034967-17035197 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 125

Conread position: 120-351
Cow position: chr17:7810737-7810493 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 122-264
Cow position: chr17:20392171-20392311 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 127-271
Cow position: chr17:18109524-18109380 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 128

Conread position: 145-264
Cow position: chr17:3307000-3307118 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 145-334
Cow position: chr17:21676934-21677127 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 127, 0

Conread position: 151-350
Cow position: chr17:21718947-21718745 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 106, 0

Conread position: 152-304
Cow position: chr17:25348419-25348571 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 124, 92

Conread position: 154-342
Cow position: chr17:7711490-7711680 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 105, 114

Conread position: 157-345
Cow position: chr17:2729856-2729671 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 16

Conread position: 159-324
Cow position: chr17:20881751-20881589 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 184-349
Cow position: chr17:27606600-27606766 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 124, 63

Show alignments to all cow chromosomes.