Cow genome map

Conread name: Spl1-SPL01B040095

Conread position: 82-265
Cow position: chr18:2146680-2146491 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 179

Conread position: 83-243
Cow position: chr18:11684889-11685050 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 83-243
Cow position: chr18:16686428-16686267 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 27

Conread position: 83-260
Cow position: chr18:51190686-51190514 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 83-265
Cow position: chr18:39875350-39875172 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 42

Conread position: 83-272
Cow position: chr18:1954682-1954494 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 35

Conread position: 83-273
Cow position: chr18:18592384-18592571 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 63, 23

Conread position: 83-273
Cow position: chr18:46727496-46727686 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 38

Conread position: 83-274
Cow position: chr18:2849363-2849170 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 39

Conread position: 83-274
Cow position: chr18:36230816-36230630 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 29, 79

Conread position: 83-278
Cow position: chr18:8299924-8300119 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 123

Conread position: 83-303
Cow position: chr18:28101540-28101759 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 78

Conread position: 83-304
Cow position: chr18:55000835-55000607 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 124

Conread position: 83-313
Cow position: chr18:28658000-28657776 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 62, 24

Conread position: 83-315
Cow position: chr18:22569159-22568928 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 64, 168

Conread position: 83-321
Cow position: chr18:34834402-34834645 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 40, 65

Conread position: 83-327
Cow position: chr18:49038368-49038609 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 40, 163

Conread position: 83-333
Cow position: chr18:35367278-35367044 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 63, 24

Conread position: 83-333
Cow position: chr18:35535242-35534989 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 40

Conread position: 83-334
Cow position: chr18:4884611-4884357 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 30, 99

Conread position: 83-334
Cow position: chr18:28930731-28930479 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 159

Conread position: 83-334
Cow position: chr18:42479679-42479418 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 83-334
Cow position: chr18:48713458-48713704 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 63, 92

Conread position: 83-335
Cow position: chr18:8171177-8170928 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 27

Conread position: 83-335
Cow position: chr18:32189603-32189355 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 20, 166

Conread position: 83-341
Cow position: chr18:9365825-9366091 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 41

Conread position: 83-342
Cow position: chr18:30360235-30359973 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 167, 45

Conread position: 83-342
Cow position: chr18:32252261-32251995 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 41

Conread position: 83-342
Cow position: chr18:42432185-42431922 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 165

Conread position: 83-343
Cow position: chr18:6309990-6310251 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 34, 24

Conread position: 83-345
Cow position: chr18:10977304-10977042 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 21, 37

Conread position: 83-345
Cow position: chr18:17974551-17974796 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 66

Conread position: 83-348
Cow position: chr18:8949885-8949620 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 34

Conread position: 83-349
Cow position: chr18:15517268-15516997 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 134

Conread position: 83-349
Cow position: chr18:22790179-22789914 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 19, 60

Conread position: 83-349
Cow position: chr18:42431704-42431437 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 63, 217

Conread position: 83-350
Cow position: chr18:7952106-7952387 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 28

Conread position: 83-353
Cow position: chr18:55119778-55120048 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 181

Conread position: 83-423
Cow position: chr18:10576011-10576357 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 166

Conread position: 86-289
Cow position: chr18:46135652-46135857 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 21

Conread position: 86-334
Cow position: chr18:9089609-9089853 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 24, 87

Conread position: 86-334
Cow position: chr18:29648692-29648942 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 24

Conread position: 86-335
Cow position: chr18:1571325-1571076 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 60, 79

Conread position: 86-342
Cow position: chr18:25598330-25598063 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 86-347
Cow position: chr18:9040799-9040529 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 86-348
Cow position: chr18:11779565-11779827 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 81, 24

Conread position: 86-349
Cow position: chr18:43797042-43796782 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 24

Conread position: 86-350
Cow position: chr18:47511916-47512170 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 60, 160

Conread position: 86-351
Cow position: chr18:33896518-33896237 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 234

Conread position: 87-237
Cow position: chr18:44483859-44483711 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 30

Conread position: 87-261
Cow position: chr18:31711655-31711476 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 160

Conread position: 87-307
Cow position: chr18:29958247-29958040 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 28

Conread position: 87-334
Cow position: chr18:44262539-44262785 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 87

Conread position: 88-249
Cow position: chr18:45570926-45571086 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 103

Conread position: 88-349
Cow position: chr18:23630694-23630439 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 96

Conread position: 89-243
Cow position: chr18:20798234-20798396 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 89-296
Cow position: chr18:29058579-29058380 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 139, 21

Conread position: 91-265
Cow position: chr18:30794341-30794514 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 94

Conread position: 91-265
Cow position: chr18:52413879-52414055 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 157

Conread position: 91-288
Cow position: chr18:14830928-14830738 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 18

Conread position: 91-349
Cow position: chr18:11691494-11691229 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 105

Conread position: 91-350
Cow position: chr18:20126220-20126471 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 10, 102

Conread position: 95-275
Cow position: chr18:23505251-23505431 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 25

Conread position: 95-334
Cow position: chr18:14225308-14225550 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 142

Conread position: 99-334
Cow position: chr18:5647737-5647970 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 14

Conread position: 100-278
Cow position: chr18:47705162-47705338 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 46, 17

Conread position: 101-324
Cow position: chr18:22516609-22516384 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 160, 135

Conread position: 102-334
Cow position: chr18:12113436-12113206 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 11, 23

Conread position: 102-334
Cow position: chr18:51383468-51383236 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 204, 15

Conread position: 105-342
Cow position: chr18:15613931-15613694 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 140

Conread position: 106-347
Cow position: chr18:9974398-9974155 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 162
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 40, 134

Conread position: 107-342
Cow position: chr18:31082416-31082173 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 10

Conread position: 107-351
Cow position: chr18:38601954-38601705 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 108-349
Cow position: chr18:4626854-4626615 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 66

Conread position: 111-342
Cow position: chr18:30341246-30341012 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 54

Conread position: 113-262
Cow position: chr18:50082322-50082172 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 134

Conread position: 113-328
Cow position: chr18:52649410-52649183 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 119-265
Cow position: chr18:16378866-16379014 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 120-271
Cow position: chr18:2773448-2773298 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 26, 125

Conread position: 120-271
Cow position: chr18:2776951-2776801 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 125

Conread position: 120-272
Cow position: chr18:28923903-28923754 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 26, 125

Conread position: 120-324
Cow position: chr18:20641552-20641349 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 125

Conread position: 120-328
Cow position: chr18:38937766-38937976 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 186, 0

Conread position: 120-334
Cow position: chr18:17391049-17390828 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 76

Conread position: 120-339
Cow position: chr18:33158887-33159110 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 36

Conread position: 121-273
Cow position: chr18:49324488-49324342 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 61

Conread position: 124-346
Cow position: chr18:44917705-44917927 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 22, 144

Conread position: 128-348
Cow position: chr18:50632490-50632268 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 118

Conread position: 137-334
Cow position: chr18:28322619-28322814 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 169, 106

Conread position: 145-334
Cow position: chr18:2794001-2793814 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 161, 105

Conread position: 145-342
Cow position: chr18:48407709-48407902 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 131, 99

Conread position: 145-349
Cow position: chr18:41724848-41724637 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 169

Conread position: 147-348
Cow position: chr18:49603071-49602866 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 110, 0

Conread position: 151-351
Cow position: chr18:50004726-50004531 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 159, 30

Conread position: 158-350
Cow position: chr18:34444753-34444559 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 94

Conread position: 174-327
Cow position: chr18:47096428-47096578 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 91, 76

Show alignments to all cow chromosomes.