Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 77-311 |
| Cow position: | chr20:33623568-33623347 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 82-313 |
| Cow position: | chr20:20203199-20203429 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 82-342 |
| Cow position: | chr20:28605192-28605452 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 63, 94 |
| Conread position: | 83-231 |
| Cow position: | chr20:3606978-3606828 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 83-249 |
| Cow position: | chr20:19363381-19363213 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 144 |
| Conread position: | 83-253 |
| Cow position: | chr20:23792594-23792758 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 83-260 |
| Cow position: | chr20:10772188-10772366 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 83-273 |
| Cow position: | chr20:38089896-38090085 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 162 |
| Conread position: | 83-274 |
| Cow position: | chr20:5826925-5827113 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 83-300 |
| Cow position: | chr20:19060855-19060638 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 83-303 |
| Cow position: | chr20:12420635-12420414 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 62, 123 |
| Conread position: | 83-319 |
| Cow position: | chr20:8578232-8578474 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 83-327 |
| Cow position: | chr20:15548916-15548661 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 83-332 |
| Cow position: | chr20:12126320-12126065 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 83-334 |
| Cow position: | chr20:38514766-38515027 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 83-342 |
| Cow position: | chr20:12581972-12581710 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 83-349 |
| Cow position: | chr20:14806870-14807137 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 83-349 |
| Cow position: | chr20:26996518-26996787 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 83-361 |
| Cow position: | chr20:22065053-22065326 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 84-283 |
| Cow position: | chr20:9412472-9412670 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 86-243 |
| Cow position: | chr20:28441316-28441471 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 86-273 |
| Cow position: | chr20:6248616-6248429 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 146 |
| Conread position: | 86-288 |
| Cow position: | chr20:17100348-17100548 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 86-300 |
| Cow position: | chr20:32463534-32463323 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 86-315 |
| Cow position: | chr20:22978313-22978545 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 86-342 |
| Cow position: | chr20:18379363-18379623 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 86-348 |
| Cow position: | chr20:13269609-13269865 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 220, 26 |
| Conread position: | 87-264 |
| Cow position: | chr20:38768468-38768298 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 87-282 |
| Cow position: | chr20:11550354-11550550 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 87-342 |
| Cow position: | chr20:6240533-6240274 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 88-255 |
| Cow position: | chr20:6358604-6358776 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 88-324 |
| Cow position: | chr20:25162139-25161903 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 88-334 |
| Cow position: | chr20:398318-398074 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 88-343 |
| Cow position: | chr20:14879776-14880036 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 161 |
| Conread position: | 88-349 |
| Cow position: | chr20:8547054-8547313 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 89-264 |
| Cow position: | chr20:11392772-11392942 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 89-265 |
| Cow position: | chr20:26723684-26723517 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 89-273 |
| Cow position: | chr20:21815550-21815731 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 90-226 |
| Cow position: | chr20:1009715-1009579 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 90-243 |
| Cow position: | chr20:8308010-8308160 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 92 |
| Conread position: | 90-324 |
| Cow position: | chr20:32847333-32847570 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 91-228 |
| Cow position: | chr20:31740229-31740088 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 91-288 |
| Cow position: | chr20:14620315-14620116 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 165 |
| Conread position: | 91-303 |
| Cow position: | chr20:12239692-12239481 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 92-307 |
| Cow position: | chr20:5702716-5702931 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 53, 153 |
| Conread position: | 99-334 |
| Cow position: | chr20:23846666-23846427 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 99-349 |
| Cow position: | chr20:20158133-20158385 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 101-243 |
| Cow position: | chr20:8817488-8817347 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 101-300 |
| Cow position: | chr20:16935308-16935114 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 101-327 |
| Cow position: | chr20:2819546-2819779 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 163, 32 |
| Conread position: | 105-333 |
| Cow position: | chr20:3255044-3255271 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 113-334 |
| Cow position: | chr20:25009618-25009395 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 114-303 |
| Cow position: | chr20:15766125-15766317 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 120-277 |
| Cow position: | chr20:13752243-13752402 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 127 |
| Conread position: | 120-334 |
| Cow position: | chr20:7738211-7737996 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 120-338 |
| Cow position: | chr20:3148704-3148923 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 120-351 |
| Cow position: | chr20:7426177-7425945 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 126-311 |
| Cow position: | chr20:36312482-36312299 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 126-350 |
| Cow position: | chr20:24315007-24314782 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 135-334 |
| Cow position: | chr20:19636141-19635940 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 139-350 |
| Cow position: | chr20:20590260-20590049 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 5 |
| Conread position: | 144-304 |
| Cow position: | chr20:630570-630730 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 145-328 |
| Cow position: | chr20:19834784-19834599 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 130, 105 |
| Conread position: | 146-342 |
| Cow position: | chr20:26041051-26040851 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 153-334 |
| Cow position: | chr20:4892065-4891880 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 167-353 |
| Cow position: | chr20:16977776-16977579 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 172-333 |
| Cow position: | chr20:26387534-26387693 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 78 |
Show alignments to all cow chromosomes.