Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 81-274 |
| Cow position: | chr21:11057872-11057687 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 83-217 |
| Cow position: | chr21:724881-724746 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 83-217 |
| Cow position: | chr21:44515268-44515403 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 83-226 |
| Cow position: | chr21:12104369-12104514 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 83-240 |
| Cow position: | chr21:20183076-20183233 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 83-251 |
| Cow position: | chr21:297757-297927 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 83-260 |
| Cow position: | chr21:7268878-7268701 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 96 |
| Conread position: | 83-265 |
| Cow position: | chr21:28191036-28191217 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 83-271 |
| Cow position: | chr21:36297495-36297685 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 170 |
| Conread position: | 83-274 |
| Cow position: | chr21:5392533-5392343 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 83-274 |
| Cow position: | chr21:9990515-9990704 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 83-289 |
| Cow position: | chr21:7768439-7768647 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 165 |
| Conread position: | 83-290 |
| Cow position: | chr21:13365345-13365552 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 83-316 |
| Cow position: | chr21:42135615-42135378 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 83-327 |
| Cow position: | chr21:957677-957921 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 83-333 |
| Cow position: | chr21:29069324-29069065 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 83-333 |
| Cow position: | chr21:34654080-34654328 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 83-334 |
| Cow position: | chr21:71590-71845 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 138 |
| Conread position: | 83-334 |
| Cow position: | chr21:641591-641843 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 63, 162 |
| Conread position: | 83-334 |
| Cow position: | chr21:8349333-8349581 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 83-334 |
| Cow position: | chr21:14126292-14126531 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 223, 17 |
| Conread position: | 83-334 |
| Cow position: | chr21:28030293-28030538 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 100 |
| Conread position: | 83-334 |
| Cow position: | chr21:37299463-37299719 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 216 |
| Conread position: | 83-334 |
| Cow position: | chr21:47719302-47719046 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 83-340 |
| Cow position: | chr21:31691487-31691737 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 83-342 |
| Cow position: | chr21:6713521-6713257 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 83-342 |
| Cow position: | chr21:24598660-24598910 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 83-343 |
| Cow position: | chr21:29214154-29213891 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 83-346 |
| Cow position: | chr21:643329-643590 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 83-350 |
| Cow position: | chr21:12461965-12461694 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 165 |
| Conread position: | 83-351 |
| Cow position: | chr21:8426451-8426723 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 83-363 |
| Cow position: | chr21:7169691-7169976 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 84-349 |
| Cow position: | chr21:44825885-44825600 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 86-226 |
| Cow position: | chr21:42540216-42540074 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 86-249 |
| Cow position: | chr21:38121107-38121272 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 86-260 |
| Cow position: | chr21:45262805-45262628 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 86-296 |
| Cow position: | chr21:19240869-19240654 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 15, 166 |
| Conread position: | 86-314 |
| Cow position: | chr21:29014554-29014326 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 166 |
| Conread position: | 86-328 |
| Cow position: | chr21:11644962-11644713 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 15, 172 |
| Conread position: | 86-349 |
| Cow position: | chr21:46599367-46599632 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 87-249 |
| Cow position: | chr21:46264180-46264341 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 87-265 |
| Cow position: | chr21:41046813-41046991 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 87-269 |
| Cow position: | chr21:9027321-9027508 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 153 |
| Conread position: | 87-334 |
| Cow position: | chr21:742294-742533 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 87-334 |
| Cow position: | chr21:32559352-32559112 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 87-351 |
| Cow position: | chr21:22861008-22861268 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 88-243 |
| Cow position: | chr21:12801742-12801582 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 88-265 |
| Cow position: | chr21:19360167-19359991 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 157 |
| Conread position: | 88-334 |
| Cow position: | chr21:30222353-30222601 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 188 |
| Conread position: | 89-265 |
| Cow position: | chr21:29484990-29485163 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 89-273 |
| Cow position: | chr21:36682332-36682518 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 159 |
| Conread position: | 89-334 |
| Cow position: | chr21:19868946-19868703 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 89-346 |
| Cow position: | chr21:27229783-27229530 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 91-263 |
| Cow position: | chr21:27569158-27568990 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 91-349 |
| Cow position: | chr21:868913-868644 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 93-334 |
| Cow position: | chr21:41590552-41590307 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 97-324 |
| Cow position: | chr21:41287775-41287547 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 99-365 |
| Cow position: | chr21:47383540-47383261 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 105-334 |
| Cow position: | chr21:22850948-22851174 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 105-358 |
| Cow position: | chr21:6051528-6051787 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 232 |
| Conread position: | 106-311 |
| Cow position: | chr21:20163735-20163940 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 107-349 |
| Cow position: | chr21:38900802-38901037 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 120-264 |
| Cow position: | chr21:46451911-46451770 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 120-273 |
| Cow position: | chr21:32297478-32297324 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 120-333 |
| Cow position: | chr21:16498560-16498773 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 120-344 |
| Cow position: | chr21:21615823-21616044 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 149 |
| Conread position: | 121-338 |
| Cow position: | chr21:24875394-24875615 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 132-334 |
| Cow position: | chr21:11182606-11182808 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 132-334 |
| Cow position: | chr21:25012135-25012337 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 144-346 |
| Cow position: | chr21:8506480-8506275 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 144-346 |
| Cow position: | chr21:8509368-8509163 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 171-342 |
| Cow position: | chr21:16120067-16119895 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 171-349 |
| Cow position: | chr21:44732950-44732769 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 174-349 |
| Cow position: | chr21:18056033-18055855 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 63 |
Show alignments to all cow chromosomes.