Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 83-243 |
| Cow position: | chr23:17404782-17404942 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 63, 137 |
| Conread position: | 83-249 |
| Cow position: | chr23:1438236-1438402 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 83-260 |
| Cow position: | chr23:1876654-1876832 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 83-265 |
| Cow position: | chr23:16961239-16961421 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 163 |
| Conread position: | 83-266 |
| Cow position: | chr23:4470558-4470372 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 83-266 |
| Cow position: | chr23:5400609-5400789 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 39, 34 |
| Conread position: | 83-272 |
| Cow position: | chr23:349007-348818 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 21, 167 |
| Conread position: | 83-273 |
| Cow position: | chr23:35369102-35368915 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 83-274 |
| Cow position: | chr23:3282180-3281990 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 83-290 |
| Cow position: | chr23:16076218-16076018 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 83-290 |
| Cow position: | chr23:22105504-22105709 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 83-295 |
| Cow position: | chr23:21502696-21502476 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 173 |
| Conread position: | 83-304 |
| Cow position: | chr23:21452788-21452567 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 83-304 |
| Cow position: | chr23:39049493-39049274 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 187, 66 |
| Conread position: | 83-306 |
| Cow position: | chr23:6367552-6367765 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 83-316 |
| Cow position: | chr23:5881575-5881344 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 170 |
| Conread position: | 83-316 |
| Cow position: | chr23:17486883-17486647 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 164 |
| Conread position: | 83-327 |
| Cow position: | chr23:12363675-12363428 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 63, 158 |
| Conread position: | 83-333 |
| Cow position: | chr23:534171-534423 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 83-333 |
| Cow position: | chr23:16881219-16880973 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 83-334 |
| Cow position: | chr23:5795421-5795674 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 83-334 |
| Cow position: | chr23:18749122-18748878 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 132 |
| Conread position: | 83-334 |
| Cow position: | chr23:24966521-24966263 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 83-334 |
| Cow position: | chr23:26986329-26986074 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 83-343 |
| Cow position: | chr23:1981711-1981466 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 83-345 |
| Cow position: | chr23:1863415-1863669 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 83-347 |
| Cow position: | chr23:2501911-2501644 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 61, 185 |
| Conread position: | 83-347 |
| Cow position: | chr23:5732493-5732748 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 83-349 |
| Cow position: | chr23:11212449-11212719 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 171 |
| Conread position: | 83-363 |
| Cow position: | chr23:1883336-1883623 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 165 |
| Conread position: | 85-348 |
| Cow position: | chr23:7845238-7845500 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 86-274 |
| Cow position: | chr23:3408967-3408772 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 173 |
| Conread position: | 86-274 |
| Cow position: | chr23:40637202-40637391 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 86-334 |
| Cow position: | chr23:20744647-20744384 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 86-334 |
| Cow position: | chr23:40995118-40995361 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 86-347 |
| Cow position: | chr23:5426377-5426645 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 19, 259 |
| Conread position: | 87-243 |
| Cow position: | chr23:35938292-35938449 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 87-273 |
| Cow position: | chr23:33717593-33717411 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 87-288 |
| Cow position: | chr23:2799527-2799724 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 87-305 |
| Cow position: | chr23:26841373-26841589 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 87-327 |
| Cow position: | chr23:13202414-13202180 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 87-328 |
| Cow position: | chr23:24685199-24685432 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 88-266 |
| Cow position: | chr23:24867254-24867436 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 88-304 |
| Cow position: | chr23:39330341-39330127 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 88-335 |
| Cow position: | chr23:1222291-1222042 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 90-304 |
| Cow position: | chr23:2160685-2160476 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 90-335 |
| Cow position: | chr23:385361-385109 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 91-351 |
| Cow position: | chr23:1614707-1614444 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 92-262 |
| Cow position: | chr23:5706946-5707114 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 92-271 |
| Cow position: | chr23:11315084-11314904 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 158 |
| Conread position: | 101-334 |
| Cow position: | chr23:39778362-39778595 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 102-342 |
| Cow position: | chr23:20093282-20093038 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 109-324 |
| Cow position: | chr23:22586849-22587066 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 110-230 |
| Cow position: | chr23:7138376-7138256 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 110-274 |
| Cow position: | chr23:28798047-28798212 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 112-286 |
| Cow position: | chr23:17231121-17231293 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 120-274 |
| Cow position: | chr23:5785824-5785975 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 120-274 |
| Cow position: | chr23:8698400-8698553 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 120-287 |
| Cow position: | chr23:29459119-29458952 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 120-347 |
| Cow position: | chr23:7709770-7709994 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 120-349 |
| Cow position: | chr23:22238842-22238608 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 196 |
| Conread position: | 122-309 |
| Cow position: | chr23:4501734-4501915 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 124-265 |
| Cow position: | chr23:18605423-18605281 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 124-353 |
| Cow position: | chr23:1877912-1877679 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 125-347 |
| Cow position: | chr23:17597411-17597633 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 123 |
| Conread position: | 128-344 |
| Cow position: | chr23:40501110-40500889 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 128-347 |
| Cow position: | chr23:22668517-22668301 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 128-348 |
| Cow position: | chr23:1194504-1194280 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 132-334 |
| Cow position: | chr23:5395484-5395285 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 145-334 |
| Cow position: | chr23:7155687-7155503 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 68 |
| Conread position: | 145-334 |
| Cow position: | chr23:24809432-24809239 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 145-348 |
| Cow position: | chr23:27849002-27849206 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 116, 162 |
| Conread position: | 146-334 |
| Cow position: | chr23:24718795-24718605 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 90 |
| Conread position: | 150-304 |
| Cow position: | chr23:14191784-14191936 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 150-334 |
| Cow position: | chr23:6179535-6179350 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 152-304 |
| Cow position: | chr23:5686184-5686030 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 152-348 |
| Cow position: | chr23:33702382-33702182 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 158-348 |
| Cow position: | chr23:15056553-15056364 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 148, 86 |
| Conread position: | 164-324 |
| Cow position: | chr23:36022764-36022604 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-348 |
| Cow position: | chr23:23104462-23104278 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 11 |
| Conread position: | 171-346 |
| Cow position: | chr23:20725656-20725481 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 97 |
| Conread position: | 198-347 |
| Cow position: | chr23:2511204-2511356 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.