Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 83-243 |
| Cow position: | chr25:36036842-36036680 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 83-248 |
| Cow position: | chr25:26089877-26089709 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 83-251 |
| Cow position: | chr25:14809219-14809380 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 83-257 |
| Cow position: | chr25:6961215-6961040 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 83-257 |
| Cow position: | chr25:25051441-25051264 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 83-260 |
| Cow position: | chr25:14157560-14157740 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 83-260 |
| Cow position: | chr25:15273612-15273787 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 83-261 |
| Cow position: | chr25:6134153-6133976 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 83-261 |
| Cow position: | chr25:12510072-12509896 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 83-264 |
| Cow position: | chr25:6683125-6682943 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 173 |
| Conread position: | 83-276 |
| Cow position: | chr25:30279271-30279076 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 83-280 |
| Cow position: | chr25:36021262-36021455 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 83-286 |
| Cow position: | chr25:7799492-7799689 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 83-316 |
| Cow position: | chr25:2624746-2624969 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 184, 31 |
| Conread position: | 83-320 |
| Cow position: | chr25:19364121-19363881 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 63, 170 |
| Conread position: | 83-324 |
| Cow position: | chr25:20523296-20523055 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 83-325 |
| Cow position: | chr25:36872301-36872547 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 83-328 |
| Cow position: | chr25:21893275-21893521 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 83-333 |
| Cow position: | chr25:13621420-13621170 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 83-334 |
| Cow position: | chr25:7641515-7641262 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 83-334 |
| Cow position: | chr25:7750389-7750640 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 160 |
| Conread position: | 83-334 |
| Cow position: | chr25:20785646-20785394 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 83-334 |
| Cow position: | chr25:26679167-26679420 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 83-342 |
| Cow position: | chr25:7216769-7217017 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 83-342 |
| Cow position: | chr25:11051467-11051723 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 83-342 |
| Cow position: | chr25:33550447-33550712 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 83-343 |
| Cow position: | chr25:21668185-21668450 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 17, 170 |
| Conread position: | 83-345 |
| Cow position: | chr25:18721183-18720924 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 83-346 |
| Cow position: | chr25:1840260-1840525 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 83-347 |
| Cow position: | chr25:7007848-7008127 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 83-347 |
| Cow position: | chr25:24669497-24669247 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 223, 17 |
| Conread position: | 83-354 |
| Cow position: | chr25:14720685-14720952 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 83-357 |
| Cow position: | chr25:13272506-13272785 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 85-243 |
| Cow position: | chr25:36019727-36019570 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 86-243 |
| Cow position: | chr25:4547775-4547619 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 86-249 |
| Cow position: | chr25:11436867-11436702 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 86-249 |
| Cow position: | chr25:19478615-19478780 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 86-265 |
| Cow position: | chr25:23745199-23745379 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 164 |
| Conread position: | 86-274 |
| Cow position: | chr25:9843116-9843306 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 86-334 |
| Cow position: | chr25:21191429-21191670 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 86-334 |
| Cow position: | chr25:36746506-36746255 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 86-334 |
| Cow position: | chr25:41151019-41150771 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 86-342 |
| Cow position: | chr25:11276494-11276748 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 87-273 |
| Cow position: | chr25:22531224-22531408 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 87-349 |
| Cow position: | chr25:24573010-24573266 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 89-261 |
| Cow position: | chr25:4681176-4681343 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 89-313 |
| Cow position: | chr25:15714817-15715041 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 89-351 |
| Cow position: | chr25:22315144-22315413 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 249 |
| Conread position: | 91-328 |
| Cow position: | chr25:26306259-26306016 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 92-296 |
| Cow position: | chr25:16319195-16318992 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 92-348 |
| Cow position: | chr25:26523909-26524170 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 93-273 |
| Cow position: | chr25:40931223-40931400 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 94-349 |
| Cow position: | chr25:38957911-38958152 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 98-423 |
| Cow position: | chr25:18288815-18288492 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 99-264 |
| Cow position: | chr25:11585474-11585636 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 99-265 |
| Cow position: | chr25:18810299-18810466 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 99-273 |
| Cow position: | chr25:26238813-26238990 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 99-349 |
| Cow position: | chr25:4157281-4157040 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 99-349 |
| Cow position: | chr25:11956761-11957011 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 13 |
| Conread position: | 100-342 |
| Cow position: | chr25:11432990-11432749 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 45, 148 |
| Conread position: | 101-316 |
| Cow position: | chr25:22348508-22348283 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 101-335 |
| Cow position: | chr25:19679312-19679545 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 102-349 |
| Cow position: | chr25:28597655-28597395 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 108-345 |
| Cow position: | chr25:22298600-22298835 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 112 |
| Conread position: | 108-357 |
| Cow position: | chr25:13222863-13223114 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 38, 137 |
| Conread position: | 110-334 |
| Cow position: | chr25:21192964-21192748 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 160, 80 |
| Conread position: | 113-345 |
| Cow position: | chr25:7673263-7673513 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 119-273 |
| Cow position: | chr25:15463561-15463714 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 121 |
| Conread position: | 120-316 |
| Cow position: | chr25:9107549-9107358 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 120-316 |
| Cow position: | chr25:35339215-35339015 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 120-328 |
| Cow position: | chr25:13823744-13823532 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 120-333 |
| Cow position: | chr25:9990135-9989910 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 120-334 |
| Cow position: | chr25:28668075-28667857 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 120-349 |
| Cow position: | chr25:5637410-5637181 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 128-273 |
| Cow position: | chr25:30625100-30624956 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 133-346 |
| Cow position: | chr25:20202901-20203112 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 142-349 |
| Cow position: | chr25:15349908-15349702 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 144-350 |
| Cow position: | chr25:1802607-1802818 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 110 |
| Conread position: | 145-261 |
| Cow position: | chr25:23998923-23998809 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 145-349 |
| Cow position: | chr25:31657276-31657068 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 161, 122 |
| Conread position: | 147-304 |
| Cow position: | chr25:15573391-15573550 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 158-342 |
| Cow position: | chr25:29903645-29903834 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 175-336 |
| Cow position: | chr25:18934604-18934441 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 77 |
Show alignments to all cow chromosomes.