Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 77-334 |
| Cow position: | chr27:19509036-19508773 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 82-226 |
| Cow position: | chr27:16625914-16625772 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 63, 100 |
| Conread position: | 83-239 |
| Cow position: | chr27:2885817-2885972 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 83-270 |
| Cow position: | chr27:4673034-4672842 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 168 |
| Conread position: | 83-271 |
| Cow position: | chr27:30846674-30846486 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 83-274 |
| Cow position: | chr27:590745-590935 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 83-290 |
| Cow position: | chr27:237285-237079 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 83-300 |
| Cow position: | chr27:19685696-19685915 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 169 |
| Conread position: | 83-304 |
| Cow position: | chr27:21669104-21669319 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 83-325 |
| Cow position: | chr27:23107886-23108132 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 83-327 |
| Cow position: | chr27:12459300-12459056 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 83-327 |
| Cow position: | chr27:23452474-23452231 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 83-333 |
| Cow position: | chr27:22171315-22171064 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 83-333 |
| Cow position: | chr27:26617415-26617177 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 83-334 |
| Cow position: | chr27:15454230-15453974 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 83-334 |
| Cow position: | chr27:23511005-23510736 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 83-341 |
| Cow position: | chr27:22220571-22220304 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 83-348 |
| Cow position: | chr27:23560015-23560281 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 83-350 |
| Cow position: | chr27:17397436-17397707 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 83-351 |
| Cow position: | chr27:15409019-15409280 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 26, 169 |
| Conread position: | 84-277 |
| Cow position: | chr27:20812920-20812728 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 86-249 |
| Cow position: | chr27:20092817-20092985 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 86-254 |
| Cow position: | chr27:4835591-4835763 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 86-325 |
| Cow position: | chr27:23890951-23890703 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 86-328 |
| Cow position: | chr27:22035363-22035604 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 86-328 |
| Cow position: | chr27:23485225-23484983 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 86-334 |
| Cow position: | chr27:4944501-4944745 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 86-348 |
| Cow position: | chr27:29597737-29597999 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 86-349 |
| Cow position: | chr27:16284489-16284235 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 86-349 |
| Cow position: | chr27:19388026-19387766 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 86-351 |
| Cow position: | chr27:20897011-20897278 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 87-223 |
| Cow position: | chr27:4812869-4813008 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 87-249 |
| Cow position: | chr27:24014726-24014890 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 87-327 |
| Cow position: | chr27:26999410-26999655 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 161 |
| Conread position: | 87-349 |
| Cow position: | chr27:31210559-31210296 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 89-304 |
| Cow position: | chr27:28206810-28206597 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 89-334 |
| Cow position: | chr27:15668760-15669013 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 89-334 |
| Cow position: | chr27:31004951-31004703 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 90-333 |
| Cow position: | chr27:426978-426732 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 91-359 |
| Cow position: | chr27:24440216-24440481 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 92-292 |
| Cow position: | chr27:26959610-26959808 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 110-351 |
| Cow position: | chr27:7412382-7412139 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 38, 143 |
| Conread position: | 114-336 |
| Cow position: | chr27:29493912-29494139 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 134 |
| Conread position: | 120-273 |
| Cow position: | chr27:16589723-16589875 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 125 |
| Conread position: | 120-273 |
| Cow position: | chr27:30489431-30489583 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 120-303 |
| Cow position: | chr27:20481386-20481562 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 120-333 |
| Cow position: | chr27:15002999-15003217 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 120-334 |
| Cow position: | chr27:7343449-7343667 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 121-349 |
| Cow position: | chr27:18435155-18435384 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 124 |
| Conread position: | 122-273 |
| Cow position: | chr27:788820-788969 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 122 |
| Conread position: | 123-346 |
| Cow position: | chr27:6106676-6106457 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 123-347 |
| Cow position: | chr27:7425212-7425440 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 128-304 |
| Cow position: | chr27:6319890-6319716 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 132-352 |
| Cow position: | chr27:26323415-26323185 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 143-316 |
| Cow position: | chr27:15859342-15859518 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 38 |
| Conread position: | 143-362 |
| Cow position: | chr27:8629916-8630138 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 42 |
| Conread position: | 144-304 |
| Cow position: | chr27:11134040-11133881 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 129, 41 |
| Conread position: | 145-334 |
| Cow position: | chr27:13204412-13204226 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 37 |
| Conread position: | 145-349 |
| Cow position: | chr27:19576370-19576577 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 125, 99 |
| Conread position: | 147-324 |
| Cow position: | chr27:26504253-26504075 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 164-334 |
| Cow position: | chr27:26087250-26087081 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 101, 80 |
Show alignments to all cow chromosomes.