Cow genome map
| Conread name: | Spl1-SPL01B040095 |
| Conread position: | 56-351 |
| Cow position: | chr9:7805850-7806135 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 82-350 |
| Cow position: | chr9:34286891-34286615 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 83-243 |
| Cow position: | chr9:19493376-19493538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 83-249 |
| Cow position: | chr9:60027289-60027119 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 83-266 |
| Cow position: | chr9:7634361-7634178 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 83-273 |
| Cow position: | chr9:4267896-4268084 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 83-277 |
| Cow position: | chr9:42445892-42446086 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 83-284 |
| Cow position: | chr9:3738134-3738335 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 83-284 |
| Cow position: | chr9:19555463-19555265 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 110 |
| Conread position: | 83-285 |
| Cow position: | chr9:9552180-9551975 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 83-288 |
| Cow position: | chr9:6596147-6596343 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 113 |
| Conread position: | 83-313 |
| Cow position: | chr9:33119798-33120033 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 229 |
| Conread position: | 83-316 |
| Cow position: | chr9:12910314-12910548 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 83-316 |
| Cow position: | chr9:29006650-29006411 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 31, 167 |
| Conread position: | 83-316 |
| Cow position: | chr9:34957965-34958200 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 18, 170 |
| Conread position: | 83-328 |
| Cow position: | chr9:26344880-26345122 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 83-328 |
| Cow position: | chr9:53762786-53762539 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 83-333 |
| Cow position: | chr9:26279084-26279338 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 83-333 |
| Cow position: | chr9:38793101-38792850 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 83-334 |
| Cow position: | chr9:13169574-13169831 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 83-334 |
| Cow position: | chr9:17840587-17840845 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 83-334 |
| Cow position: | chr9:17872019-17872273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 83-334 |
| Cow position: | chr9:39011382-39011633 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 83-334 |
| Cow position: | chr9:45141514-45141762 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 83-334 |
| Cow position: | chr9:45285439-45285705 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 83-335 |
| Cow position: | chr9:25557063-25556816 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 170 |
| Conread position: | 83-335 |
| Cow position: | chr9:60394963-60395216 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 83-336 |
| Cow position: | chr9:6192374-6192625 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 83-338 |
| Cow position: | chr9:30124009-30123761 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 83-342 |
| Cow position: | chr9:28726633-28726902 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 170 |
| Conread position: | 83-347 |
| Cow position: | chr9:8636756-8636499 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 169 |
| Conread position: | 83-347 |
| Cow position: | chr9:51620525-51620265 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 83-349 |
| Cow position: | chr9:18380950-18380687 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 83-351 |
| Cow position: | chr9:9311948-9311678 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 149 |
| Conread position: | 83-351 |
| Cow position: | chr9:34024789-34024517 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 86-242 |
| Cow position: | chr9:21080647-21080492 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 86-249 |
| Cow position: | chr9:32981987-32982153 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 86-264 |
| Cow position: | chr9:54615216-54615391 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 86-265 |
| Cow position: | chr9:9686329-9686504 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 86-276 |
| Cow position: | chr9:48628115-48627925 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 86-334 |
| Cow position: | chr9:61303088-61302837 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 86-335 |
| Cow position: | chr9:53109337-53109084 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 86-342 |
| Cow position: | chr9:36490807-36491078 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 86-342 |
| Cow position: | chr9:54493223-54492964 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 161 |
| Conread position: | 86-346 |
| Cow position: | chr9:33584598-33584862 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 86-347 |
| Cow position: | chr9:11299606-11299854 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 86-351 |
| Cow position: | chr9:20091132-20090876 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 87-334 |
| Cow position: | chr9:8628832-8629078 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 89-258 |
| Cow position: | chr9:5763550-5763717 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 89-271 |
| Cow position: | chr9:5219087-5219270 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 150 |
| Conread position: | 89-271 |
| Cow position: | chr9:19067866-19067686 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 89-324 |
| Cow position: | chr9:29194940-29195188 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 90-284 |
| Cow position: | chr9:18342812-18342619 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 90-370 |
| Cow position: | chr9:9403095-9403373 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 91-334 |
| Cow position: | chr9:41785291-41785055 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 93-320 |
| Cow position: | chr9:17740864-17741091 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 171, 103 |
| Conread position: | 93-328 |
| Cow position: | chr9:41728339-41728100 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 93-340 |
| Cow position: | chr9:33823199-33822944 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 98-334 |
| Cow position: | chr9:63361647-63361877 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 103-335 |
| Cow position: | chr9:57131565-57131331 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 110-273 |
| Cow position: | chr9:8562883-8562722 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 113-361 |
| Cow position: | chr9:24887265-24887016 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 227 |
| Conread position: | 120-316 |
| Cow position: | chr9:4241458-4241259 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 120-342 |
| Cow position: | chr9:9595898-9596124 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 120-345 |
| Cow position: | chr9:4341107-4341333 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 120-347 |
| Cow position: | chr9:5104351-5104586 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 120-348 |
| Cow position: | chr9:22440430-22440652 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 120-352 |
| Cow position: | chr9:43159804-43159571 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 133 |
| Conread position: | 121-273 |
| Cow position: | chr9:6293646-6293494 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 122-249 |
| Cow position: | chr9:39758568-39758440 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 124-284 |
| Cow position: | chr9:55354659-55354501 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 125-349 |
| Cow position: | chr9:36628165-36627945 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 119 |
| Conread position: | 129-336 |
| Cow position: | chr9:11098413-11098619 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 130-324 |
| Cow position: | chr9:22165671-22165873 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 130-341 |
| Cow position: | chr9:58131911-58132121 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 130-345 |
| Cow position: | chr9:34374882-34375103 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 16, 207 |
| Conread position: | 145-334 |
| Cow position: | chr9:42508858-42508662 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 99 |
| Conread position: | 146-334 |
| Cow position: | chr9:19718315-19718500 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 164, 98 |
| Conread position: | 152-350 |
| Cow position: | chr9:24079321-24079123 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 157, 95 |
| Conread position: | 154-348 |
| Cow position: | chr9:32052293-32052097 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 93 |
| Conread position: | 157-349 |
| Cow position: | chr9:19771376-19771179 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 161-347 |
| Cow position: | chr9:48900826-48901014 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 102, 148 |
| Conread position: | 169-334 |
| Cow position: | chr9:11873302-11873461 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 179-347 |
| Cow position: | chr9:28773131-28772962 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 62 |
Show alignments to all cow chromosomes.