Cow genome map

Conread name: Spl1-SPL01B040095

Conread position: 80-261
Cow position: chrX:7695715-7695892 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 41

Conread position: 83-257
Cow position: chrX:46429854-46429679 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 164

Conread position: 83-263
Cow position: chrX:45846067-45846247 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 26, 72

Conread position: 83-265
Cow position: chrX:4153067-4152883 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 165

Conread position: 83-265
Cow position: chrX:27306420-27306604 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 83-265
Cow position: chrX:31311995-31312177 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 163

Conread position: 83-269
Cow position: chrX:23091835-23092025 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 9

Conread position: 83-273
Cow position: chrX:616294-616100 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 83-273
Cow position: chrX:17725942-17726132 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 63, 165

Conread position: 83-274
Cow position: chrX:33493745-33493934 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 19, 100

Conread position: 83-274
Cow position: chrX:40532076-40531886 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 20, 35

Conread position: 83-278
Cow position: chrX:41192668-41192865 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 165

Conread position: 83-284
Cow position: chrX:619036-618840 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 120

Conread position: 83-288
Cow position: chrX:14883990-14883781 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 19, 164

Conread position: 83-303
Cow position: chrX:4515652-4515879 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 28

Conread position: 83-304
Cow position: chrX:14275778-14275556 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 26, 167

Conread position: 83-314
Cow position: chrX:40557713-40557482 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 38, 187

Conread position: 83-316
Cow position: chrX:40035475-40035233 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 17

Conread position: 83-324
Cow position: chrX:31436444-31436683 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 34

Conread position: 83-333
Cow position: chrX:11326132-11325886 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 32, 27

Conread position: 83-334
Cow position: chrX:5919458-5919711 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 173

Conread position: 83-334
Cow position: chrX:9201518-9201767 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 63, 36

Conread position: 83-334
Cow position: chrX:9252194-9251939 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 63, 24

Conread position: 83-334
Cow position: chrX:13913035-13913299 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 37, 195

Conread position: 83-334
Cow position: chrX:28940214-28940468 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 7

Conread position: 83-334
Cow position: chrX:29050215-29050466 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 18, 101

Conread position: 83-345
Cow position: chrX:21986324-21986065 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 76

Conread position: 83-345
Cow position: chrX:38642217-38642477 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 16, 37

Conread position: 83-346
Cow position: chrX:22074762-22075031 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 55, 218

Conread position: 83-347
Cow position: chrX:22482731-22482452 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 107

Conread position: 83-347
Cow position: chrX:34376914-34377174 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 30

Conread position: 83-348
Cow position: chrX:45110624-45110891 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 26

Conread position: 83-349
Cow position: chrX:1466129-1466401 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 168

Conread position: 83-349
Cow position: chrX:19394520-19394794 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 63, 0

Conread position: 83-349
Cow position: chrX:34532487-34532754 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 239

Conread position: 83-349
Cow position: chrX:41871033-41871297 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 18, 163

Conread position: 83-351
Cow position: chrX:12979869-12979596 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 259

Conread position: 83-351
Cow position: chrX:27431946-27431685 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 63, 22

Conread position: 83-351
Cow position: chrX:34313997-34314262 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 60

Conread position: 83-393
Cow position: chrX:26881600-26881281 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 26, 222

Conread position: 83-426
Cow position: chrX:20584292-20584632 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 237
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 172

Conread position: 86-243
Cow position: chrX:35224267-35224424 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 35

Conread position: 86-249
Cow position: chrX:37232384-37232541 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 20

Conread position: 86-261
Cow position: chrX:36975921-36976095 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 24

Conread position: 86-266
Cow position: chrX:38853168-38853349 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 96

Conread position: 86-273
Cow position: chrX:40269459-40269650 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 0

Conread position: 86-276
Cow position: chrX:23562604-23562791 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 22

Conread position: 86-324
Cow position: chrX:5118532-5118284 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 0

Conread position: 86-328
Cow position: chrX:41526552-41526316 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 76

Conread position: 86-333
Cow position: chrX:8869433-8869181 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 15, 32

Conread position: 86-334
Cow position: chrX:4289410-4289658 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 24

Conread position: 86-334
Cow position: chrX:34411813-34412072 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 26, 0

Conread position: 86-334
Cow position: chrX:40826780-40826526 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 41

Conread position: 86-334
Cow position: chrX:45502116-45502359 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 34

Conread position: 86-342
Cow position: chrX:9651055-9650796 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 174
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 28, 248

Conread position: 86-345
Cow position: chrX:37781140-37780877 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 26, 166

Conread position: 86-355
Cow position: chrX:24749058-24749332 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 60, 96

Conread position: 87-265
Cow position: chrX:5135553-5135372 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 164

Conread position: 88-273
Cow position: chrX:36848607-36848421 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 93

Conread position: 89-348
Cow position: chrX:34837084-34836833 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 27

Conread position: 89-349
Cow position: chrX:6544228-6544484 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 95

Conread position: 89-357
Cow position: chrX:22393012-22392740 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 12, 152

Conread position: 90-367
Cow position: chrX:29542244-29541972 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 12, 115

Conread position: 92-271
Cow position: chrX:36067990-36068173 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 12, 32

Conread position: 92-327
Cow position: chrX:33855245-33855009 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 119

Conread position: 93-346
Cow position: chrX:37072369-37072622 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 50

Conread position: 93-347
Cow position: chrX:35885751-35885497 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 156

Conread position: 95-335
Cow position: chrX:38560536-38560775 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 147

Conread position: 98-334
Cow position: chrX:16836304-16836070 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 47, 84

Conread position: 98-347
Cow position: chrX:27145591-27145836 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 48, 9

Conread position: 102-334
Cow position: chrX:12972668-12972902 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 8

Conread position: 105-350
Cow position: chrX:47345318-47345570 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 14

Conread position: 107-271
Cow position: chrX:4616020-4615859 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 125

Conread position: 109-257
Cow position: chrX:25328622-25328475 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 42

Conread position: 111-334
Cow position: chrX:2935952-2936177 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 159

Conread position: 111-334
Cow position: chrX:10252203-10251978 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 34, 63

Conread position: 113-342
Cow position: chrX:4466964-4467185 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 33, 138

Conread position: 114-334
Cow position: chrX:27668960-27668738 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 32, 131

Conread position: 120-264
Cow position: chrX:29501877-29501737 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 120-328
Cow position: chrX:39290363-39290573 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 126

Conread position: 120-334
Cow position: chrX:13177475-13177260 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 6, 128

Conread position: 120-334
Cow position: chrX:16984645-16984859 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 26, 111

Conread position: 120-347
Cow position: chrX:11656085-11656314 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 133

Conread position: 127-324
Cow position: chrX:29467767-29467568 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 18, 140

Conread position: 129-324
Cow position: chrX:20957251-20957453 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 132-334
Cow position: chrX:20583682-20583884 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 14, 113

Conread position: 134-289
Cow position: chrX:34508562-34508716 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 111

Conread position: 145-334
Cow position: chrX:5026286-5026475 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 160, 99

Conread position: 145-334
Cow position: chrX:23359081-23358893 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 161, 36

Conread position: 145-334
Cow position: chrX:32866905-32867094 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 161, 99

Conread position: 150-334
Cow position: chrX:34991399-34991585 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 122, 89

Conread position: 157-334
Cow position: chrX:23471824-23471644 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 107, 93

Conread position: 170-328
Cow position: chrX:31827789-31827637 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.