Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-207 |
| Cow position: | chr11:30252685-30252891 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 167, 184 |
| Conread position: | 1-235 |
| Cow position: | chr11:10091166-10091400 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 182 |
| Conread position: | 1-286 |
| Cow position: | chr11:33194071-33193785 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 1-325 |
| Cow position: | chr11:1495601-1495275 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-326 |
| Cow position: | chr11:32452313-32452640 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 312 |
| Conread position: | 1-326 |
| Cow position: | chr11:64081595-64081269 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-327 |
| Cow position: | chr11:21443768-21444088 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 1-327 |
| Cow position: | chr11:52419878-52420215 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 182, 321 |
| Conread position: | 1-329 |
| Cow position: | chr11:15984113-15984448 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 313 |
| Conread position: | 1-330 |
| Cow position: | chr11:53286677-53286359 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 211, 182 |
| Conread position: | 1-331 |
| Cow position: | chr11:5342434-5342101 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 313 |
| Conread position: | 1-331 |
| Cow position: | chr11:19063585-19063254 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-331 |
| Cow position: | chr11:28108624-28108955 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-331 |
| Cow position: | chr11:57627571-57627235 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-338 |
| Cow position: | chr11:12094055-12094390 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 134 |
| Conread position: | 1-375 |
| Cow position: | chr11:44518379-44517990 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 1-375 |
| Cow position: | chr11:61400572-61400203 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 24 |
| Conread position: | 1-376 |
| Cow position: | chr11:9734185-9733802 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 1-382 |
| Cow position: | chr11:54484925-54484533 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 29 |
| Conread position: | 1-383 |
| Cow position: | chr11:1489654-1489268 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 29 |
| Conread position: | 1-383 |
| Cow position: | chr11:3493482-3493871 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 181 |
| Conread position: | 1-383 |
| Cow position: | chr11:4063372-4062991 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 35 |
| Conread position: | 1-383 |
| Cow position: | chr11:4269915-4269519 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-383 |
| Cow position: | chr11:9156670-9156265 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 182 |
| Conread position: | 1-383 |
| Cow position: | chr11:10847938-10848333 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:11988599-11989015 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 1-383 |
| Cow position: | chr11:12357929-12357531 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:17107198-17106800 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:17546652-17547045 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 21 |
| Conread position: | 1-383 |
| Cow position: | chr11:20733754-20733356 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:23127408-23127021 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 1-383 |
| Cow position: | chr11:26124439-26124047 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:26547998-26548408 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:28054122-28053732 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 86 |
| Conread position: | 1-383 |
| Cow position: | chr11:29232522-29232135 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 132 |
| Conread position: | 1-383 |
| Cow position: | chr11:29668121-29667723 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 184 |
| Conread position: | 1-383 |
| Cow position: | chr11:31926659-31927047 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 165, 49 |
| Conread position: | 1-383 |
| Cow position: | chr11:41170208-41169811 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:47759796-47759395 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:49553673-49553288 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 1-383 |
| Cow position: | chr11:53431571-53431167 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-383 |
| Cow position: | chr11:58134881-58135279 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr11:63654849-63654451 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 216, 102 |
| Conread position: | 1-383 |
| Cow position: | chr11:67846081-67845688 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 91 |
| Conread position: | 1-383 |
| Cow position: | chr11:71330080-71330478 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 81 |
| Conread position: | 1-383 |
| Cow position: | chr11:85393320-85392943 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 57 |
| Conread position: | 1-387 |
| Cow position: | chr11:31861391-31861788 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 40 |
| Conread position: | 1-394 |
| Cow position: | chr11:44156760-44156353 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-429 |
| Cow position: | chr11:43514145-43513699 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 182 |
| Conread position: | 2-323 |
| Cow position: | chr11:9216589-9216272 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 50 |
| Conread position: | 2-383 |
| Cow position: | chr11:38834947-38834552 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 182 |
| Conread position: | 10-383 |
| Cow position: | chr11:44582839-44582452 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 174 |
| Conread position: | 14-394 |
| Cow position: | chr11:24393816-24394210 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 170 |
| Conread position: | 24-325 |
| Cow position: | chr11:4034837-4034534 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 193, 40 |
| Conread position: | 26-322 |
| Cow position: | chr11:21902582-21902291 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 105 |
| Conread position: | 34-383 |
| Cow position: | chr11:7110584-7110225 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 53-323 |
| Cow position: | chr11:35254849-35254586 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 191, 111 |
| Conread position: | 70-383 |
| Cow position: | chr11:75554424-75554116 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 5, 112 |
| Conread position: | 84-338 |
| Cow position: | chr11:22935664-22935917 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 99 |
| Conread position: | 89-338 |
| Cow position: | chr11:21930442-21930195 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 131, 60 |
| Conread position: | 93-383 |
| Cow position: | chr11:72310455-72310151 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 123, 91 |
| Conread position: | 146-330 |
| Cow position: | chr11:37357920-37358104 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 220-383 |
| Cow position: | chr11:66729801-66729978 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 241-384 |
| Cow position: | chr11:26070310-26070165 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 73 |
Show alignments to all cow chromosomes.