Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-298 |
| Cow position: | chr14:5512254-5512552 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-302 |
| Cow position: | chr14:35385640-35385340 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 38 |
| Conread position: | 1-304 |
| Cow position: | chr14:44775606-44775303 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 1-323 |
| Cow position: | chr14:44131326-44131638 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 218, 36 |
| Conread position: | 1-330 |
| Cow position: | chr14:33402118-33402449 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 81 |
| Conread position: | 1-331 |
| Cow position: | chr14:23257784-23258117 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 217, 102 |
| Conread position: | 1-331 |
| Cow position: | chr14:45671617-45671286 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 1-338 |
| Cow position: | chr14:44676549-44676887 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 1-339 |
| Cow position: | chr14:44581784-44582128 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 1-340 |
| Cow position: | chr14:37455629-37455294 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 1-371 |
| Cow position: | chr14:17685829-17686213 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-373 |
| Cow position: | chr14:33393357-33392982 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 90 |
| Conread position: | 1-376 |
| Cow position: | chr14:38531028-38530639 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 107 |
| Conread position: | 1-379 |
| Cow position: | chr14:13863660-13863274 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 67 |
| Conread position: | 1-379 |
| Cow position: | chr14:30595949-30595547 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 1-382 |
| Cow position: | chr14:16919284-16918893 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 88 |
| Conread position: | 1-383 |
| Cow position: | chr14:2284768-2285154 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr14:5074398-5074779 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 162 |
| Conread position: | 1-383 |
| Cow position: | chr14:5529498-5529887 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 186 |
| Conread position: | 1-383 |
| Cow position: | chr14:9046005-9046402 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr14:12610882-12611256 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 71 |
| Conread position: | 1-383 |
| Cow position: | chr14:12742637-12742242 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-383 |
| Cow position: | chr14:16272866-16272469 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr14:17000629-17000232 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 183 |
| Conread position: | 1-383 |
| Cow position: | chr14:17760448-17760054 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 97 |
| Conread position: | 1-383 |
| Cow position: | chr14:19327838-19327436 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 1-383 |
| Cow position: | chr14:20782892-20783281 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 1-383 |
| Cow position: | chr14:22031010-22030619 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 1-383 |
| Cow position: | chr14:29047255-29046859 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 221, 57 |
| Conread position: | 1-383 |
| Cow position: | chr14:33677494-33677895 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 1-383 |
| Cow position: | chr14:37224621-37225017 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-383 |
| Cow position: | chr14:38147432-38147830 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 261 |
| Conread position: | 1-383 |
| Cow position: | chr14:40169283-40168906 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 100 |
| Conread position: | 1-383 |
| Cow position: | chr14:45081480-45081880 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 183 |
| Conread position: | 1-383 |
| Cow position: | chr14:45711285-45710898 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 1-383 |
| Cow position: | chr14:48253881-48253488 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr14:48825713-48826112 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 1-383 |
| Cow position: | chr14:50111222-50111620 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-394 |
| Cow position: | chr14:32447226-32447631 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 104 |
| Conread position: | 1-394 |
| Cow position: | chr14:44378232-44378638 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 101 |
| Conread position: | 1-439 |
| Cow position: | chr14:45028572-45028102 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 318 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 126, 160 |
| Conread position: | 2-295 |
| Cow position: | chr14:29775785-29775489 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 5 |
| Conread position: | 2-330 |
| Cow position: | chr14:46529653-46529982 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 3-250 |
| Cow position: | chr14:45189346-45189099 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 217, 83 |
| Conread position: | 3-383 |
| Cow position: | chr14:50138996-50139389 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 4-375 |
| Cow position: | chr14:750999-751383 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 180 |
| Conread position: | 4-383 |
| Cow position: | chr14:46392098-46391705 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 19 |
| Conread position: | 7-383 |
| Cow position: | chr14:40341487-40341883 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 176 |
| Conread position: | 10-238 |
| Cow position: | chr14:16343710-16343481 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 14-380 |
| Cow position: | chr14:27977804-27978183 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 170 |
| Conread position: | 46-339 |
| Cow position: | chr14:35424569-35424847 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 56-330 |
| Cow position: | chr14:37413259-37412985 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 161, 126 |
| Conread position: | 71-383 |
| Cow position: | chr14:43558738-43559061 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 28 |
| Conread position: | 123-439 |
| Cow position: | chr14:30666052-30666385 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 189-383 |
| Cow position: | chr14:13303589-13303784 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 5 |
Show alignments to all cow chromosomes.