Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-302 |
| Cow position: | chr15:6592185-6591881 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 47 |
| Conread position: | 1-304 |
| Cow position: | chr15:9738939-9738650 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 219, 99 |
| Conread position: | 1-309 |
| Cow position: | chr15:32480152-32479854 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 246, 51 |
| Conread position: | 1-309 |
| Cow position: | chr15:36625838-36625528 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 77 |
| Conread position: | 1-331 |
| Cow position: | chr15:2647223-2646892 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-331 |
| Cow position: | chr15:4196894-4197225 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr15:17079773-17079437 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 174, 89 |
| Conread position: | 1-331 |
| Cow position: | chr15:20749822-20750154 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr15:28489716-28489381 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 208, 183 |
| Conread position: | 1-331 |
| Cow position: | chr15:28986600-28986279 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 173, 77 |
| Conread position: | 1-331 |
| Cow position: | chr15:50123510-50123171 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 182, 75 |
| Conread position: | 1-338 |
| Cow position: | chr15:9913121-9913467 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 186 |
| Conread position: | 1-350 |
| Cow position: | chr15:4962070-4962419 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 29 |
| Conread position: | 1-367 |
| Cow position: | chr15:6485020-6485382 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 163, 22 |
| Conread position: | 1-375 |
| Cow position: | chr15:3009421-3009023 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 182, 234 |
| Conread position: | 1-375 |
| Cow position: | chr15:11597575-11597188 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-376 |
| Cow position: | chr15:44070360-44070749 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 183 |
| Conread position: | 1-383 |
| Cow position: | chr15:524425-524042 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 15 |
| Conread position: | 1-383 |
| Cow position: | chr15:579873-580258 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 55 |
| Conread position: | 1-383 |
| Cow position: | chr15:1782655-1783064 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 238 |
| Conread position: | 1-383 |
| Cow position: | chr15:2017001-2017389 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-383 |
| Cow position: | chr15:3260886-3260493 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 173 |
| Conread position: | 1-383 |
| Cow position: | chr15:4386192-4386580 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr15:4922580-4922973 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 184 |
| Conread position: | 1-383 |
| Cow position: | chr15:6079182-6079580 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 1-383 |
| Cow position: | chr15:6155511-6155117 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr15:6553389-6552994 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 170, 89 |
| Conread position: | 1-383 |
| Cow position: | chr15:7234696-7235075 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 65 |
| Conread position: | 1-383 |
| Cow position: | chr15:8099903-8100296 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 1-383 |
| Cow position: | chr15:8811592-8811196 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr15:11626124-11626514 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 46 |
| Conread position: | 1-383 |
| Cow position: | chr15:15346682-15346285 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr15:17148560-17148950 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 246, 182 |
| Conread position: | 1-383 |
| Cow position: | chr15:17293510-17293876 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 49 |
| Conread position: | 1-383 |
| Cow position: | chr15:18332394-18332000 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 38 |
| Conread position: | 1-383 |
| Cow position: | chr15:21665313-21664915 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 35 |
| Conread position: | 1-383 |
| Cow position: | chr15:24295530-24295913 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 183 |
| Conread position: | 1-383 |
| Cow position: | chr15:32720309-32719916 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 70 |
| Conread position: | 1-383 |
| Cow position: | chr15:35752886-35752491 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 1-383 |
| Cow position: | chr15:36668173-36668577 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 1-383 |
| Cow position: | chr15:51218036-51218426 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr15:51675149-51675544 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 186 |
| Conread position: | 1-393 |
| Cow position: | chr15:499176-499586 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 1-394 |
| Cow position: | chr15:4671866-4672276 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 165 |
| Conread position: | 1-394 |
| Cow position: | chr15:4813032-4813441 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 76 |
| Conread position: | 1-394 |
| Cow position: | chr15:5980780-5981191 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 2-295 |
| Cow position: | chr15:1658281-1658000 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 215, 10 |
| Conread position: | 2-295 |
| Cow position: | chr15:1668161-1668442 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 215, 10 |
| Conread position: | 2-375 |
| Cow position: | chr15:1772930-1773318 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 183 |
| Conread position: | 2-394 |
| Cow position: | chr15:35647234-35646836 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 90 |
| Conread position: | 3-372 |
| Cow position: | chr15:2902038-2901651 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 216, 77 |
| Conread position: | 3-383 |
| Cow position: | chr15:4765611-4766011 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 181 |
| Conread position: | 4-338 |
| Cow position: | chr15:2214459-2214126 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 155 |
| Conread position: | 7-383 |
| Cow position: | chr15:18577149-18577540 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 177 |
| Conread position: | 9-379 |
| Cow position: | chr15:4651798-4652187 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 208, 62 |
| Conread position: | 9-383 |
| Cow position: | chr15:8750842-8751231 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 136 |
| Conread position: | 25-331 |
| Cow position: | chr15:22378360-22378667 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 159 |
| Conread position: | 27-383 |
| Cow position: | chr15:13391610-13391238 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 179 |
| Conread position: | 47-439 |
| Cow position: | chr15:7545342-7545755 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 140, 64 |
| Conread position: | 52-383 |
| Cow position: | chr15:4678771-4679086 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 165, 25 |
| Conread position: | 54-383 |
| Cow position: | chr15:2925797-2926136 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 130 |
| Conread position: | 57-383 |
| Cow position: | chr15:35736277-35736620 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 126 |
| Conread position: | 66-383 |
| Cow position: | chr15:1764824-1765131 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 150, 32 |
| Conread position: | 66-383 |
| Cow position: | chr15:32711722-32712052 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 143, 117 |
| Conread position: | 82-324 |
| Cow position: | chr15:2012851-2013102 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 135, 101 |
| Conread position: | 88-383 |
| Cow position: | chr15:38981244-38981555 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 129, 96 |
| Conread position: | 90-383 |
| Cow position: | chr15:53409437-53409741 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 91-324 |
| Cow position: | chr15:1833934-1833692 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 106-377 |
| Cow position: | chr15:6386805-6386522 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 136-383 |
| Cow position: | chr15:12420860-12420598 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 137-331 |
| Cow position: | chr15:1042635-1042441 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 48 |
| Conread position: | 145-429 |
| Cow position: | chr15:4926956-4927247 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 156-394 |
| Cow position: | chr15:4950650-4950908 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 176-394 |
| Cow position: | chr15:4915802-4916029 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 41 |
| Conread position: | 179-439 |
| Cow position: | chr15:36392530-36392243 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 463-620 |
| Cow position: | chr15:1298069-1297911 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 107 |
Show alignments to all cow chromosomes.