Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-212 |
| Cow position: | chr16:4302251-4302040 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 186, 110 |
| Conread position: | 1-236 |
| Cow position: | chr16:25255557-25255786 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 216, 65 |
| Conread position: | 1-249 |
| Cow position: | chr16:11283399-11283648 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-261 |
| Cow position: | chr16:25258035-25258302 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 191 |
| Conread position: | 1-282 |
| Cow position: | chr16:2727198-2726918 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 24 |
| Conread position: | 1-283 |
| Cow position: | chr16:27733702-27733427 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 79 |
| Conread position: | 1-302 |
| Cow position: | chr16:12537835-12537536 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 86 |
| Conread position: | 1-309 |
| Cow position: | chr16:37455922-37455622 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 24 |
| Conread position: | 1-325 |
| Cow position: | chr16:25188737-25189062 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 173 |
| Conread position: | 1-331 |
| Cow position: | chr16:21185704-21186034 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 39 |
| Conread position: | 1-331 |
| Cow position: | chr16:28170282-28169940 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 174, 322 |
| Conread position: | 1-350 |
| Cow position: | chr16:10375509-10375163 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 21 |
| Conread position: | 1-351 |
| Cow position: | chr16:16271050-16270702 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 30 |
| Conread position: | 1-382 |
| Cow position: | chr16:23252345-23251954 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 161 |
| Conread position: | 1-382 |
| Cow position: | chr16:28471012-28470617 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:406944-406556 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 81 |
| Conread position: | 1-383 |
| Cow position: | chr16:1432276-1432675 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 97 |
| Conread position: | 1-383 |
| Cow position: | chr16:1567363-1566971 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 161 |
| Conread position: | 1-383 |
| Cow position: | chr16:1860311-1860700 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 182 |
| Conread position: | 1-383 |
| Cow position: | chr16:2410877-2410484 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:2483050-2482655 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:5484820-5485215 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:5661933-5662313 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 117 |
| Conread position: | 1-383 |
| Cow position: | chr16:7676365-7675974 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-383 |
| Cow position: | chr16:10438326-10438736 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 198 |
| Conread position: | 1-383 |
| Cow position: | chr16:14665723-14665325 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 184 |
| Conread position: | 1-383 |
| Cow position: | chr16:15185161-15185556 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:18498200-18497814 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 123 |
| Conread position: | 1-383 |
| Cow position: | chr16:23535802-23535406 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:25342058-25342442 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr16:25441716-25442112 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 184 |
| Conread position: | 1-383 |
| Cow position: | chr16:25457374-25456993 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 184 |
| Conread position: | 1-383 |
| Cow position: | chr16:29047112-29047507 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 81 |
| Conread position: | 1-383 |
| Cow position: | chr16:31591830-31591432 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr16:34530402-34530787 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 1-383 |
| Cow position: | chr16:43897186-43896790 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 101 |
| Conread position: | 1-394 |
| Cow position: | chr16:8816017-8815606 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-394 |
| Cow position: | chr16:15493592-15494002 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 182 |
| Conread position: | 1-394 |
| Cow position: | chr16:26663839-26664250 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 185 |
| Conread position: | 1-394 |
| Cow position: | chr16:40296087-40295676 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 168 |
| Conread position: | 1-439 |
| Cow position: | chr16:29034140-29034613 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 89 |
| Conread position: | 2-383 |
| Cow position: | chr16:23670787-23671181 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 181 |
| Conread position: | 3-383 |
| Cow position: | chr16:37481036-37480656 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 191, 27 |
| Conread position: | 7-353 |
| Cow position: | chr16:51405846-51405506 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 54 |
| Conread position: | 33-394 |
| Cow position: | chr16:19151497-19151118 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 34-382 |
| Cow position: | chr16:337291-337649 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 10 |
| Conread position: | 70-383 |
| Cow position: | chr16:56916907-56916588 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 113 |
| Conread position: | 71-336 |
| Cow position: | chr16:3089044-3088777 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 85, 114 |
| Conread position: | 72-383 |
| Cow position: | chr16:27714635-27714327 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 146, 40 |
| Conread position: | 74-377 |
| Cow position: | chr16:26978300-26978618 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 125, 110 |
| Conread position: | 82-383 |
| Cow position: | chr16:26105891-26105576 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 142, 21 |
| Conread position: | 97-383 |
| Cow position: | chr16:23983482-23983780 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 119, 87 |
| Conread position: | 102-383 |
| Cow position: | chr16:837502-837801 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 102-383 |
| Cow position: | chr16:15567444-15567740 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 117, 81 |
| Conread position: | 134-330 |
| Cow position: | chr16:9931070-9931263 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 49 |
| Conread position: | 138-383 |
| Cow position: | chr16:7464053-7464313 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 149-383 |
| Cow position: | chr16:49234394-49234148 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 186-382 |
| Cow position: | chr16:3330209-3330421 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 243-394 |
| Cow position: | chr16:20202331-20202492 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 463-626 |
| Cow position: | chr16:22868418-22868253 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 82, 128 |
Show alignments to all cow chromosomes.