Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-294 |
| Cow position: | chr17:42265620-42265915 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 1-324 |
| Cow position: | chr17:3642171-3641849 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-330 |
| Cow position: | chr17:43989159-43989490 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 6 |
| Conread position: | 1-331 |
| Cow position: | chr17:34156779-34157110 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 311 |
| Conread position: | 1-336 |
| Cow position: | chr17:3655633-3655298 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 215, 123 |
| Conread position: | 1-336 |
| Cow position: | chr17:11783504-11783836 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 120 |
| Conread position: | 1-344 |
| Cow position: | chr17:1657187-1656847 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 33 |
| Conread position: | 1-345 |
| Cow position: | chr17:20099816-20099468 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-351 |
| Cow position: | chr17:8209769-8210124 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 1-353 |
| Cow position: | chr17:13990683-13990338 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 1-379 |
| Cow position: | chr17:24782819-24783213 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 102 |
| Conread position: | 1-379 |
| Cow position: | chr17:31532887-31533261 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 268 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 1-380 |
| Cow position: | chr17:2247408-2247035 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 182 |
| Conread position: | 1-382 |
| Cow position: | chr17:14040372-14039987 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 15 |
| Conread position: | 1-383 |
| Cow position: | chr17:2262765-2263163 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 184 |
| Conread position: | 1-383 |
| Cow position: | chr17:4060760-4061153 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 57 |
| Conread position: | 1-383 |
| Cow position: | chr17:6069215-6069606 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 182 |
| Conread position: | 1-383 |
| Cow position: | chr17:6120373-6120771 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr17:6260518-6260916 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr17:11087061-11086671 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr17:14216372-14215972 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 84 |
| Conread position: | 1-383 |
| Cow position: | chr17:15324490-15324885 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr17:15436453-15436837 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 90 |
| Conread position: | 1-383 |
| Cow position: | chr17:16856857-16856463 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 182 |
| Conread position: | 1-383 |
| Cow position: | chr17:19268168-19267771 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr17:20488602-20488998 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 58 |
| Conread position: | 1-383 |
| Cow position: | chr17:23323792-23323397 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 182 |
| Conread position: | 1-383 |
| Cow position: | chr17:24029343-24028947 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-384 |
| Cow position: | chr17:20087089-20086708 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 89 |
| Conread position: | 1-394 |
| Cow position: | chr17:2580283-2580694 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 78 |
| Conread position: | 1-394 |
| Cow position: | chr17:20081205-20080802 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 91 |
| Conread position: | 1-394 |
| Cow position: | chr17:40805470-40805877 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-439 |
| Cow position: | chr17:1787278-1786816 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 185 |
| Conread position: | 3-383 |
| Cow position: | chr17:22558650-22559025 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 249, 49 |
| Conread position: | 8-383 |
| Cow position: | chr17:1880766-1881157 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 141 |
| Conread position: | 10-379 |
| Cow position: | chr17:15142687-15142304 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 82 |
| Conread position: | 11-383 |
| Cow position: | chr17:14240169-14240555 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 173 |
| Conread position: | 14-365 |
| Cow position: | chr17:151224-150873 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 169 |
| Conread position: | 30-383 |
| Cow position: | chr17:16121830-16121498 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 215, 29 |
| Conread position: | 37-303 |
| Cow position: | chr17:17130837-17131099 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 40-382 |
| Cow position: | chr17:8202671-8203009 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 43-339 |
| Cow position: | chr17:4082730-4083012 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 49-323 |
| Cow position: | chr17:13705252-13705528 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 136, 223 |
| Conread position: | 77-383 |
| Cow position: | chr17:15371962-15372283 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 107 |
| Conread position: | 77-418 |
| Cow position: | chr17:239080-239432 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 110 |
| Conread position: | 136-386 |
| Cow position: | chr17:2174607-2174866 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 139-383 |
| Cow position: | chr17:22132999-22133254 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 439-626 |
| Cow position: | chr17:11278258-11278070 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 73 |
| Conread position: | 439-629 |
| Cow position: | chr17:22563957-22564145 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 28, 16 |
Show alignments to all cow chromosomes.