Cow genome map

Conread name: Spl1-SPL01C050096

Conread position: 1-283
Cow position: chr2:80292636-80292362 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 13

Conread position: 1-292
Cow position: chr2:49472563-49472857 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 82, 0

Conread position: 1-321
Cow position: chr2:14777526-14777223 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 122, 118

Conread position: 1-325
Cow position: chr2:36052692-36052375 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 65

Conread position: 1-325
Cow position: chr2:39421938-39422262 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-331
Cow position: chr2:2356125-2355794 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 185

Conread position: 1-331
Cow position: chr2:3324244-3323915 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 224, 91

Conread position: 1-338
Cow position: chr2:14823418-14823738 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 54

Conread position: 1-338
Cow position: chr2:38012970-38013306 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 206
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 217, 16

Conread position: 1-338
Cow position: chr2:43961013-43961349 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 219, 47

Conread position: 1-339
Cow position: chr2:7903356-7903688 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 88

Conread position: 1-339
Cow position: chr2:41172983-41173322 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 77

Conread position: 1-340
Cow position: chr2:27317631-27317960 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 32

Conread position: 1-351
Cow position: chr2:53554280-53554621 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 98

Conread position: 1-356
Cow position: chr2:3834646-3834293 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 105

Conread position: 1-364
Cow position: chr2:32655985-32656344 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 116

Conread position: 1-375
Cow position: chr2:364743-364365 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 313

Conread position: 1-379
Cow position: chr2:4402842-4402451 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 183

Conread position: 1-379
Cow position: chr2:41657491-41657883 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 1-382
Cow position: chr2:6961832-6962227 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr2:211944-211547 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 182

Conread position: 1-383
Cow position: chr2:282374-281980 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr2:1691292-1691680 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 93

Conread position: 1-383
Cow position: chr2:5484675-5484297 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 79

Conread position: 1-383
Cow position: chr2:5870070-5869670 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 47

Conread position: 1-383
Cow position: chr2:8118857-8119255 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 182

Conread position: 1-383
Cow position: chr2:9958756-9958356 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 0

Conread position: 1-383
Cow position: chr2:10268342-10267953 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 183

Conread position: 1-383
Cow position: chr2:11158803-11158411 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 183

Conread position: 1-383
Cow position: chr2:12479755-12479359 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 99

Conread position: 1-383
Cow position: chr2:13045389-13045002 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 51

Conread position: 1-383
Cow position: chr2:16075185-16074821 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 42

Conread position: 1-383
Cow position: chr2:16900568-16900970 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr2:19011661-19012065 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 0

Conread position: 1-383
Cow position: chr2:24147181-24147574 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 164

Conread position: 1-383
Cow position: chr2:24924878-24925276 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 182

Conread position: 1-383
Cow position: chr2:25028967-25028581 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 216, 182

Conread position: 1-383
Cow position: chr2:28649282-28648891 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 31

Conread position: 1-383
Cow position: chr2:28793563-28793958 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 186

Conread position: 1-383
Cow position: chr2:34051483-34051868 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 183

Conread position: 1-383
Cow position: chr2:42332551-42332178 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 99, 20

Conread position: 1-383
Cow position: chr2:42670390-42669994 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 71

Conread position: 1-383
Cow position: chr2:44934637-44934269 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 263
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 215, 29

Conread position: 1-383
Cow position: chr2:47811161-47811559 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 129

Conread position: 1-383
Cow position: chr2:49605257-49605652 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 186

Conread position: 1-383
Cow position: chr2:51617564-51617964 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 183

Conread position: 1-383
Cow position: chr2:52616787-52617186 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr2:53330073-53330473 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 186

Conread position: 1-383
Cow position: chr2:59413369-59412982 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 173

Conread position: 1-383
Cow position: chr2:81257489-81257879 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 79

Conread position: 1-394
Cow position: chr2:36980696-36981104 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 64

Conread position: 1-394
Cow position: chr2:67420634-67420224 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 185

Conread position: 1-439
Cow position: chr2:13482351-13481893 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 318
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 13, 112

Conread position: 1-439
Cow position: chr2:50077916-50078362 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 70

Conread position: 2-243
Cow position: chr2:65938134-65937895 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 21

Conread position: 2-330
Cow position: chr2:2412480-2412152 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 181

Conread position: 2-383
Cow position: chr2:44990980-44990591 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 83

Conread position: 2-383
Cow position: chr2:47038105-47037723 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 181

Conread position: 2-383
Cow position: chr2:78742899-78743294 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 78

Conread position: 3-294
Cow position: chr2:45964799-45964507 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 70

Conread position: 6-299
Cow position: chr2:38373705-38373996 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 122, 113

Conread position: 7-380
Cow position: chr2:4927080-4926710 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 213, 12

Conread position: 7-383
Cow position: chr2:10185903-10185517 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 132

Conread position: 7-383
Cow position: chr2:31298111-31298502 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 10

Conread position: 10-310
Cow position: chr2:53662034-53662337 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 72

Conread position: 10-375
Cow position: chr2:9908238-9908617 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 46

Conread position: 13-383
Cow position: chr2:33088449-33088828 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 18

Conread position: 14-295
Cow position: chr2:20919819-20919535 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 194, 178

Conread position: 23-386
Cow position: chr2:47602930-47602551 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 161

Conread position: 25-383
Cow position: chr2:10611301-10610935 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 158

Conread position: 31-394
Cow position: chr2:63291621-63291246 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 186, 61

Conread position: 34-439
Cow position: chr2:73193457-73193859 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 276
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 65, 150

Conread position: 39-331
Cow position: chr2:51989580-51989288 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 178, 53

Conread position: 49-383
Cow position: chr2:55483776-55483440 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 170, 55

Conread position: 60-338
Cow position: chr2:49627983-49628259 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 32

Conread position: 63-338
Cow position: chr2:77391168-77391440 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 180
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 16

Conread position: 71-265
Cow position: chr2:37789537-37789347 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 72-373
Cow position: chr2:40453303-40453607 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 214
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 145, 27

Conread position: 82-383
Cow position: chr2:28619559-28619244 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 169, 101

Conread position: 97-383
Cow position: chr2:2381492-2381794 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 85, 278

Conread position: 99-383
Cow position: chr2:175151-174848 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 8, 168

Conread position: 103-383
Cow position: chr2:574010-574304 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 111, 80

Conread position: 122-304
Cow position: chr2:767067-766873 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 172-383
Cow position: chr2:25888057-25887836 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 15, 102

Conread position: 463-583
Cow position: chr2:42292722-42292850 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.