Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-212 |
| Cow position: | chr21:11452709-11452498 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-267 |
| Cow position: | chr21:360591-360860 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-283 |
| Cow position: | chr21:1689212-1688925 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 211, 18 |
| Conread position: | 1-302 |
| Cow position: | chr21:46916623-46916925 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-309 |
| Cow position: | chr21:4184852-4185160 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-322 |
| Cow position: | chr21:37719071-37718756 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 8 |
| Conread position: | 1-331 |
| Cow position: | chr21:37046570-37046899 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 143 |
| Conread position: | 1-331 |
| Cow position: | chr21:37372185-37372515 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 183 |
| Conread position: | 1-331 |
| Cow position: | chr21:37935772-37936103 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-374 |
| Cow position: | chr21:26402540-26402156 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-375 |
| Cow position: | chr21:12055054-12054684 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 21 |
| Conread position: | 1-383 |
| Cow position: | chr21:30029-30415 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 54 |
| Conread position: | 1-383 |
| Cow position: | chr21:467826-468198 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 62 |
| Conread position: | 1-383 |
| Cow position: | chr21:2417163-2417559 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 184 |
| Conread position: | 1-383 |
| Cow position: | chr21:2540125-2539760 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 57 |
| Conread position: | 1-383 |
| Cow position: | chr21:2882790-2882396 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 1-383 |
| Cow position: | chr21:3779716-3780112 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 70 |
| Conread position: | 1-383 |
| Cow position: | chr21:5840316-5839921 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr21:9892839-9893235 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 1-383 |
| Cow position: | chr21:18817606-18817204 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 184 |
| Conread position: | 1-383 |
| Cow position: | chr21:21915638-21916030 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 120, 63 |
| Conread position: | 1-383 |
| Cow position: | chr21:27070019-27069622 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 70 |
| Conread position: | 1-383 |
| Cow position: | chr21:28256381-28256767 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 182 |
| Conread position: | 1-383 |
| Cow position: | chr21:31515380-31514974 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 183 |
| Conread position: | 1-383 |
| Cow position: | chr21:33253125-33253524 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 1-383 |
| Cow position: | chr21:35144710-35145101 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 16 |
| Conread position: | 1-383 |
| Cow position: | chr21:40270724-40270330 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 104 |
| Conread position: | 1-387 |
| Cow position: | chr21:146877-147272 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-394 |
| Cow position: | chr21:1192708-1193111 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 104 |
| Conread position: | 2-302 |
| Cow position: | chr21:5018062-5018364 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 103 |
| Conread position: | 2-331 |
| Cow position: | chr21:11506546-11506888 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 95, 74 |
| Conread position: | 2-349 |
| Cow position: | chr21:10567626-10567963 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 23 |
| Conread position: | 3-383 |
| Cow position: | chr21:2511792-2512189 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 27 |
| Conread position: | 6-231 |
| Cow position: | chr21:28613062-28613272 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 208, 13 |
| Conread position: | 7-229 |
| Cow position: | chr21:27566597-27566812 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 7-321 |
| Cow position: | chr21:13313713-13314024 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 132 |
| Conread position: | 7-383 |
| Cow position: | chr21:10851034-10851428 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 49-379 |
| Cow position: | chr21:42914361-42914702 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 50-383 |
| Cow position: | chr21:28985114-28985448 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 76-383 |
| Cow position: | chr21:45782504-45782825 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 107 |
| Conread position: | 77-418 |
| Cow position: | chr21:26835914-26836278 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 140, 106 |
| Conread position: | 92-380 |
| Cow position: | chr21:2673968-2673665 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 100-383 |
| Cow position: | chr21:30598428-30598138 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 151, 86 |
| Conread position: | 113-331 |
| Cow position: | chr21:27036341-27036122 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 73 |
| Conread position: | 130-383 |
| Cow position: | chr21:47942024-47942289 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 176-375 |
| Cow position: | chr21:11452424-11452218 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 137 |
| Conread position: | 178-331 |
| Cow position: | chr21:26849897-26849741 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 439-628 |
| Cow position: | chr21:18494762-18494954 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 22 |
Show alignments to all cow chromosomes.