Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-212 |
| Cow position: | chr22:8135331-8135134 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-236 |
| Cow position: | chr22:6142607-6142377 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 139 |
| Conread position: | 1-277 |
| Cow position: | chr22:14630194-14630470 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-325 |
| Cow position: | chr22:37267936-37268261 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 161 |
| Conread position: | 1-326 |
| Cow position: | chr22:31314122-31314447 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-330 |
| Cow position: | chr22:6021438-6021769 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr22:11804281-11803947 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 314 |
| Conread position: | 1-331 |
| Cow position: | chr22:20240067-20239735 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 184 |
| Conread position: | 1-331 |
| Cow position: | chr22:24950873-24951215 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 322 |
| Conread position: | 1-338 |
| Cow position: | chr22:11032527-11032861 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 57 |
| Conread position: | 1-339 |
| Cow position: | chr22:36551463-36551136 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 248, 16 |
| Conread position: | 1-350 |
| Cow position: | chr22:27309000-27308653 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-368 |
| Cow position: | chr22:44457830-44458213 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 122 |
| Conread position: | 1-372 |
| Cow position: | chr22:44368851-44368455 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 77, 192 |
| Conread position: | 1-379 |
| Cow position: | chr22:326393-326022 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 22 |
| Conread position: | 1-383 |
| Cow position: | chr22:537876-538275 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 92 |
| Conread position: | 1-383 |
| Cow position: | chr22:559926-559536 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 29 |
| Conread position: | 1-383 |
| Cow position: | chr22:694397-694793 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 102 |
| Conread position: | 1-383 |
| Cow position: | chr22:1520244-1519849 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 69 |
| Conread position: | 1-383 |
| Cow position: | chr22:1879569-1879976 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr22:3277583-3277188 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 59 |
| Conread position: | 1-383 |
| Cow position: | chr22:6502363-6501965 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 63 |
| Conread position: | 1-383 |
| Cow position: | chr22:10909061-10908667 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr22:12730908-12730516 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 182 |
| Conread position: | 1-383 |
| Cow position: | chr22:15313176-15312779 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr22:18028057-18028457 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 183 |
| Conread position: | 1-383 |
| Cow position: | chr22:21590113-21590506 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-383 |
| Cow position: | chr22:34169114-34169510 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr22:36860754-36860368 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 58 |
| Conread position: | 1-383 |
| Cow position: | chr22:37133431-37133825 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 30 |
| Conread position: | 1-383 |
| Cow position: | chr22:37140677-37141071 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 30 |
| Conread position: | 1-383 |
| Cow position: | chr22:37292894-37292493 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 186 |
| Conread position: | 1-394 |
| Cow position: | chr22:42991955-42992360 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 98 |
| Conread position: | 3-323 |
| Cow position: | chr22:1281953-1281628 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 166 |
| Conread position: | 3-383 |
| Cow position: | chr22:36184535-36184931 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 182 |
| Conread position: | 3-383 |
| Cow position: | chr22:39468743-39468347 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 7-375 |
| Cow position: | chr22:1322994-1323370 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 95 |
| Conread position: | 7-394 |
| Cow position: | chr22:9044913-9045313 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 9-383 |
| Cow position: | chr22:18815597-18815194 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 175 |
| Conread position: | 13-439 |
| Cow position: | chr22:16201714-16202165 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 17-383 |
| Cow position: | chr22:44477402-44477792 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 137 |
| Conread position: | 32-383 |
| Cow position: | chr22:8737523-8737164 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 151 |
| Conread position: | 36-383 |
| Cow position: | chr22:6332521-6332881 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 104 |
| Conread position: | 37-383 |
| Cow position: | chr22:44934784-44935141 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 45 |
| Conread position: | 52-322 |
| Cow position: | chr22:36276447-36276728 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 167, 132 |
| Conread position: | 54-375 |
| Cow position: | chr22:35906556-35906227 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 73-394 |
| Cow position: | chr22:46612722-46613048 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 144, 110 |
| Conread position: | 113-383 |
| Cow position: | chr22:6602321-6602062 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 137, 70 |
| Conread position: | 151-323 |
| Cow position: | chr22:40370376-40370546 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 160-331 |
| Cow position: | chr22:19319947-19320120 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 216-383 |
| Cow position: | chr22:8121093-8120909 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 462-626 |
| Cow position: | chr22:18196262-18196430 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 38 |
Show alignments to all cow chromosomes.