Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-212 |
| Cow position: | chr24:12484456-12484245 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-237 |
| Cow position: | chr24:29183012-29183248 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 183 |
| Conread position: | 1-302 |
| Cow position: | chr24:38638400-38638698 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 182 |
| Conread position: | 1-320 |
| Cow position: | chr24:36709215-36709553 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 1-331 |
| Cow position: | chr24:6328170-6327839 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr24:29305459-29305123 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 187, 316 |
| Conread position: | 1-350 |
| Cow position: | chr24:23505003-23504655 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-375 |
| Cow position: | chr24:12699955-12699570 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 320 |
| Conread position: | 1-375 |
| Cow position: | chr24:44018395-44018755 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 216, 129 |
| Conread position: | 1-379 |
| Cow position: | chr24:36558911-36558530 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 1-380 |
| Cow position: | chr24:17696121-17695727 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr24:147748-147354 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-383 |
| Cow position: | chr24:5992366-5991970 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr24:6024242-6023850 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 63 |
| Conread position: | 1-383 |
| Cow position: | chr24:6059762-6060154 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 20 |
| Conread position: | 1-383 |
| Cow position: | chr24:6084930-6085318 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 106, 135 |
| Conread position: | 1-383 |
| Cow position: | chr24:6337247-6337644 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 198 |
| Conread position: | 1-383 |
| Cow position: | chr24:6406891-6407290 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-383 |
| Cow position: | chr24:6435340-6435738 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 195 |
| Conread position: | 1-383 |
| Cow position: | chr24:6659630-6659241 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 92 |
| Conread position: | 1-383 |
| Cow position: | chr24:12087068-12087464 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 81 |
| Conread position: | 1-383 |
| Cow position: | chr24:12109846-12109448 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 185 |
| Conread position: | 1-383 |
| Cow position: | chr24:12129206-12128807 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr24:13233113-13233513 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 185 |
| Conread position: | 1-383 |
| Cow position: | chr24:14871452-14871065 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 79 |
| Conread position: | 1-383 |
| Cow position: | chr24:22971952-22972348 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr24:29188152-29188548 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-393 |
| Cow position: | chr24:9187872-9187474 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 184 |
| Conread position: | 1-394 |
| Cow position: | chr24:4414670-4414264 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 138 |
| Conread position: | 1-394 |
| Cow position: | chr24:12334897-12334487 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 183 |
| Conread position: | 1-394 |
| Cow position: | chr24:19834253-19834666 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 185 |
| Conread position: | 1-405 |
| Cow position: | chr24:1450319-1450706 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 214, 18 |
| Conread position: | 1-439 |
| Cow position: | chr24:12205454-12204993 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 3-380 |
| Cow position: | chr24:9544928-9545315 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 137 |
| Conread position: | 5-380 |
| Cow position: | chr24:6332829-6332443 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 178 |
| Conread position: | 6-304 |
| Cow position: | chr24:43060169-43060457 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 241, 58 |
| Conread position: | 10-383 |
| Cow position: | chr24:14389671-14389278 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 34 |
| Conread position: | 34-299 |
| Cow position: | chr24:9091167-9090907 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 42 |
| Conread position: | 34-383 |
| Cow position: | chr24:14881701-14881354 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 183, 24 |
| Conread position: | 36-394 |
| Cow position: | chr24:12238193-12238561 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 180, 148 |
| Conread position: | 47-265 |
| Cow position: | chr24:27147618-27147835 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 170, 84 |
| Conread position: | 55-383 |
| Cow position: | chr24:14754587-14754944 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 162, 128 |
| Conread position: | 55-394 |
| Cow position: | chr24:6129750-6130096 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 196, 48 |
| Conread position: | 63-394 |
| Cow position: | chr24:6142018-6142353 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 154, 19 |
| Conread position: | 96-375 |
| Cow position: | chr24:13044675-13044394 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 121, 90 |
| Conread position: | 98-394 |
| Cow position: | chr24:12150356-12150042 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 9, 177 |
| Conread position: | 109-345 |
| Cow position: | chr24:17302520-17302284 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 135-383 |
| Cow position: | chr24:6353157-6353400 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 181-383 |
| Cow position: | chr24:35869515-35869305 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 99 |
Show alignments to all cow chromosomes.