Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-237 |
| Cow position: | chr28:22232599-22232362 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 1-276 |
| Cow position: | chr28:2724101-2723826 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 213, 148 |
| Conread position: | 1-302 |
| Cow position: | chr28:1217331-1217030 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 104 |
| Conread position: | 1-310 |
| Cow position: | chr28:6231949-6231643 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 216, 42 |
| Conread position: | 1-331 |
| Cow position: | chr28:6538441-6538111 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 129 |
| Conread position: | 1-331 |
| Cow position: | chr28:14751366-14751697 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 183 |
| Conread position: | 1-365 |
| Cow position: | chr28:1386569-1386211 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 54 |
| Conread position: | 1-372 |
| Cow position: | chr28:5113474-5113090 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-372 |
| Cow position: | chr28:8720122-8719739 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 19 |
| Conread position: | 1-375 |
| Cow position: | chr28:10646577-10646215 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 102 |
| Conread position: | 1-382 |
| Cow position: | chr28:5765566-5765949 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 65 |
| Conread position: | 1-383 |
| Cow position: | chr28:1167054-1166661 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 148 |
| Conread position: | 1-383 |
| Cow position: | chr28:1505692-1506085 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 80 |
| Conread position: | 1-383 |
| Cow position: | chr28:3191433-3191037 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr28:8379879-8380282 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 65 |
| Conread position: | 1-383 |
| Cow position: | chr28:9179449-9179831 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr28:10072097-10072491 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 182 |
| Conread position: | 1-383 |
| Cow position: | chr28:10581265-10580871 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 104 |
| Conread position: | 1-383 |
| Cow position: | chr28:12151128-12151525 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 145 |
| Conread position: | 1-383 |
| Cow position: | chr28:12409403-12409017 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 1-383 |
| Cow position: | chr28:13460796-13461194 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr28:14704565-14704169 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 183 |
| Conread position: | 1-383 |
| Cow position: | chr28:17666480-17666088 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 48 |
| Conread position: | 1-383 |
| Cow position: | chr28:24589674-24590075 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 316 |
| Conread position: | 1-383 |
| Cow position: | chr28:24884155-24883767 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 185 |
| Conread position: | 1-383 |
| Cow position: | chr28:26425433-26425036 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr28:33253126-33253524 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 324 |
| Conread position: | 1-394 |
| Cow position: | chr28:5938307-5938716 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-394 |
| Cow position: | chr28:22260329-22259919 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 182 |
| Conread position: | 1-394 |
| Cow position: | chr28:24668442-24668842 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 97 |
| Conread position: | 1-394 |
| Cow position: | chr28:32791553-32791149 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 185 |
| Conread position: | 2-383 |
| Cow position: | chr28:7741272-7741660 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 2-394 |
| Cow position: | chr28:7002819-7003228 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 182 |
| Conread position: | 3-383 |
| Cow position: | chr28:10460779-10460391 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 7-383 |
| Cow position: | chr28:783501-783875 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 176 |
| Conread position: | 8-339 |
| Cow position: | chr28:15684066-15684405 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 178 |
| Conread position: | 21-383 |
| Cow position: | chr28:5814218-5814575 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 25 |
| Conread position: | 25-383 |
| Cow position: | chr28:7811296-7811656 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 30-379 |
| Cow position: | chr28:29820847-29821210 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 154 |
| Conread position: | 34-330 |
| Cow position: | chr28:484738-484444 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 183, 43 |
| Conread position: | 54-304 |
| Cow position: | chr28:24540968-24541219 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 130 |
| Conread position: | 56-383 |
| Cow position: | chr28:14233061-14232714 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 66-375 |
| Cow position: | chr28:2988196-2987877 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 117 |
| Conread position: | 109-383 |
| Cow position: | chr28:15035186-15034905 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 75 |
| Conread position: | 124-331 |
| Cow position: | chr28:1954299-1954507 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 127-383 |
| Cow position: | chr28:22042327-22042069 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 90, 57 |
| Conread position: | 135-383 |
| Cow position: | chr28:10470464-10470723 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 142-375 |
| Cow position: | chr28:6457360-6457126 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 145-383 |
| Cow position: | chr28:7788927-7788680 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 113, 39 |
| Conread position: | 154-383 |
| Cow position: | chr28:10496558-10496314 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 158-383 |
| Cow position: | chr28:13374258-13374037 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 166-331 |
| Cow position: | chr28:7027270-7027104 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 439-628 |
| Cow position: | chr28:33163729-33163537 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 92, 156 |
Show alignments to all cow chromosomes.